Search of human proteins with 5453559

Search of human proteins with 5453559

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5453559 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit d isoform a [Homo sapiens]
         (161 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5453559 ATP synthase, H+ transporting, mitochondrial F0 compl...   329   5e-91
gi|51479152 ATP synthase, H+ transporting, mitochondrial F0 comp...   268   1e-72
gi|169183850 PREDICTED: similar to hCG1809973 [Homo sapiens]          240   3e-64
gi|169179690 PREDICTED: similar to ATP synthase, H+ transporting...   240   3e-64
gi|239743684 PREDICTED: hypothetical protein LOC138864 [Homo sap...   240   3e-64
gi|169179753 PREDICTED: similar to hCG1809973 [Homo sapiens]          227   4e-60
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]    40   9e-04
gi|109689695 transient receptor potential cation channel, subfam...    31   0.40 
gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo ...    30   1.2  
gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo ...    30   1.2  
gi|27262630 nuclear autoantigenic sperm protein isoform 3 [Homo ...    30   1.2  
gi|18378731 HMG-BOX transcription factor BBX isoform 2 [Homo sap...    29   1.5  
gi|194294510 kinesin family member C3 isoform 2 [Homo sapiens]         29   1.5  
gi|194294508 kinesin family member C3 isoform 3 [Homo sapiens]         29   1.5  
gi|94536858 kinesin family member C3 isoform 1 [Homo sapiens]          29   1.5  
gi|216548395 dachsous 2 isoform 3 [Homo sapiens]                       29   1.5  
gi|216548385 dachsous 2 isoform 2 [Homo sapiens]                       29   1.5  
gi|131889097 cancer susceptibility candidate 1 isoform b [Homo s...    29   1.5  
gi|131889447 cancer susceptibility candidate 1 isoform c [Homo s...    29   1.5  
gi|131888105 cancer susceptibility candidate 1 isoform a [Homo s...    29   1.5  
gi|38372919 basigin isoform 1 precursor [Homo sapiens]                 29   2.0  
gi|38372923 basigin isoform 4 [Homo sapiens]                           29   2.0  
gi|38372925 basigin isoform 2 precursor [Homo sapiens]                 29   2.0  
gi|27544939 chromosome 3 open reading frame 10 [Homo sapiens]          29   2.0  
gi|226497734 RNA binding motif protein 19 [Homo sapiens]               28   2.6  
gi|226497654 RNA binding motif protein 19 [Homo sapiens]               28   2.6  
gi|226497574 RNA binding motif protein 19 [Homo sapiens]               28   2.6  
gi|239753482 PREDICTED: similar to HSPC300 [Homo sapiens]              28   2.6  
gi|71061468 centromere protein E [Homo sapiens]                        28   2.6  
gi|40548397 NADP-dependent retinol dehydrogenase/reductase [Homo...    28   2.6  

>gi|5453559 ATP synthase, H+ transporting, mitochondrial F0 complex,
           subunit d isoform a [Homo sapiens]
          Length = 161

 Score =  329 bits (844), Expect = 5e-91
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
           MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN
Sbjct: 1   MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60

Query: 61  VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME 120
           VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME
Sbjct: 61  VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME 120

Query: 121 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL 161
           KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL
Sbjct: 121 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL 161


>gi|51479152 ATP synthase, H+ transporting, mitochondrial F0
           complex, subunit d isoform b [Homo sapiens]
          Length = 137

 Score =  268 bits (685), Expect = 1e-72
 Identities = 137/161 (85%), Positives = 137/161 (85%), Gaps = 24/161 (14%)

Query: 1   MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
           MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN
Sbjct: 1   MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60

Query: 61  VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME 120
           VAKAGLVDDFEKK                        VKSCAEWVSLSKARIVEYEKEME
Sbjct: 61  VAKAGLVDDFEKK------------------------VKSCAEWVSLSKARIVEYEKEME 96

Query: 121 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL 161
           KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL
Sbjct: 97  KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL 137


>gi|169183850 PREDICTED: similar to hCG1809973 [Homo sapiens]
          Length = 144

 Score =  240 bits (613), Expect = 3e-64
 Identities = 118/144 (81%), Positives = 129/144 (89%)

Query: 1   MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
           MAG+KLALK IDWV   E I +NQKAIA+SL SWNE LTSRLA LPEN P+IDW YYKA+
Sbjct: 1   MAGQKLALKIIDWVTSWESISRNQKAIANSLTSWNEILTSRLAILPENKPSIDWTYYKAS 60

Query: 61  VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME 120
           VAKAGLVDDFEKKFNALK PVPEDKYTAQVDAEEKEDVK+CAEW+SLSKARI +YEK++E
Sbjct: 61  VAKAGLVDDFEKKFNALKFPVPEDKYTAQVDAEEKEDVKTCAEWMSLSKARIGQYEKQLE 120

Query: 121 KMKNLIPFDQMTIEDLNEAFPETK 144
           KM+NLIPFDQ T EDLNEAFPETK
Sbjct: 121 KMRNLIPFDQTTTEDLNEAFPETK 144


>gi|169179690 PREDICTED: similar to ATP synthase, H+ transporting,
           mitochondrial F0 complex, subunit d [Homo sapiens]
          Length = 144

 Score =  240 bits (613), Expect = 3e-64
 Identities = 118/144 (81%), Positives = 129/144 (89%)

Query: 1   MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
           MAG+KLALK IDWV   E I +NQKAIA+SL SWNE LTSRLA LPEN P+IDW YYKA+
Sbjct: 1   MAGQKLALKIIDWVTSWESISRNQKAIANSLTSWNEILTSRLAILPENKPSIDWTYYKAS 60

Query: 61  VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME 120
           VAKAGLVDDFEKKFNALK PVPEDKYTAQVDAEEKEDVK+CAEW+SLSKARI +YEK++E
Sbjct: 61  VAKAGLVDDFEKKFNALKFPVPEDKYTAQVDAEEKEDVKTCAEWMSLSKARIGQYEKQLE 120

Query: 121 KMKNLIPFDQMTIEDLNEAFPETK 144
           KM+NLIPFDQ T EDLNEAFPETK
Sbjct: 121 KMRNLIPFDQTTTEDLNEAFPETK 144


>gi|239743684 PREDICTED: hypothetical protein LOC138864 [Homo
           sapiens]
          Length = 144

 Score =  240 bits (613), Expect = 3e-64
 Identities = 118/144 (81%), Positives = 129/144 (89%)

Query: 1   MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
           MAG+KLALK IDWV   E I +NQKAIA+SL SWNE LTSRLA LPEN P+IDW YYKA+
Sbjct: 1   MAGQKLALKIIDWVTSWESISRNQKAIANSLTSWNEILTSRLAILPENKPSIDWTYYKAS 60

Query: 61  VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME 120
           VAKAGLVDDFEKKFNALK PVPEDKYTAQVDAEEKEDVK+CAEW+SLSKARI +YEK++E
Sbjct: 61  VAKAGLVDDFEKKFNALKFPVPEDKYTAQVDAEEKEDVKTCAEWMSLSKARIGQYEKQLE 120

Query: 121 KMKNLIPFDQMTIEDLNEAFPETK 144
           KM+NLIPFDQ T EDLNEAFPETK
Sbjct: 121 KMRNLIPFDQTTTEDLNEAFPETK 144


>gi|169179753 PREDICTED: similar to hCG1809973 [Homo sapiens]
          Length = 160

 Score =  227 bits (578), Expect = 4e-60
 Identities = 115/161 (71%), Positives = 129/161 (80%), Gaps = 7/161 (4%)

Query: 1   MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
           MAG+KLALK IDWV   E I +NQKAIA+SL SWNE LTSRLA LPEN P+IDW YYKA+
Sbjct: 1   MAGQKLALKIIDWVTSWESISRNQKAIANSLTSWNEILTSRLAILPENKPSIDWTYYKAS 60

Query: 61  VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME 120
           VAKAGLVDDFEKKFNALK PVPEDKYTAQVDAEEKEDVK+CAEW+SLSKARI +YEK++E
Sbjct: 61  VAKAGLVDDFEKKFNALKFPVPEDKYTAQVDAEEKEDVKTCAEWMSLSKARIGQYEKQLE 120

Query: 121 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL 161
           KM+NLIPFDQ T EDL       KL+       P  P++ L
Sbjct: 121 KMRNLIPFDQTTTEDLXXXXXXXKLN-------PQMPVQTL 154


>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
          Length = 1684

 Score = 40.0 bits (92), Expect = 9e-04
 Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 20/145 (13%)

Query: 22   QNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVDDFE---------- 71
            +N      ++ S NE L +R+  L  N   ++    +   AKA +  + E          
Sbjct: 1055 RNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKI 1114

Query: 72   -------KKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKN 124
                    +   L+V + ++K   Q   +E E VK  A+  +L    I +YE+ M+++  
Sbjct: 1115 KEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQ 1174

Query: 125  LIPFDQMTIEDLNEAFPETKLDKKK 149
             +      IEDL +   E K+ K+K
Sbjct: 1175 KLTNKNNKIEDLEQ---EIKIQKQK 1196


>gi|109689695 transient receptor potential cation channel, subfamily
           M, member 8 [Homo sapiens]
          Length = 1104

 Score = 31.2 bits (69), Expect = 0.40
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 16  FAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVDDFEKKFN 75
           F   I QN+K ++  +  W +T    LAAL  +      A  K ++  AG  ++   ++ 
Sbjct: 565 FIWAILQNKKELSKVI--WEQTRGCTLAALGASKLLKTLAKVKNDINAAGESEELANEYE 622

Query: 76  ALKVPVPEDKYTAQVDAEEKEDVKSCAEW 104
              V +  + Y++  D  E+  V SC  W
Sbjct: 623 TRAVELFTECYSSDEDLAEQLLVYSCEAW 651


>gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo
           sapiens]
          Length = 788

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 103 EWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEA 139
           E V  ++    EY+KE+E++K L+P  +  IED  E+
Sbjct: 623 EQVKEAEGSSAEYKKEIEELKELLPEIREKIEDAKES 659


>gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo
           sapiens]
          Length = 790

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 103 EWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEA 139
           E V  ++    EY+KE+E++K L+P  +  IED  E+
Sbjct: 625 EQVKEAEGSSAEYKKEIEELKELLPEIREKIEDAKES 661


>gi|27262630 nuclear autoantigenic sperm protein isoform 3 [Homo
           sapiens]
          Length = 449

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 103 EWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEA 139
           E V  ++    EY+KE+E++K L+P  +  IED  E+
Sbjct: 284 EQVKEAEGSSAEYKKEIEELKELLPEIREKIEDAKES 320


>gi|18378731 HMG-BOX transcription factor BBX isoform 2 [Homo
           sapiens]
          Length = 911

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 61  VAKAGLVDDFEKKFNALK--VPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKE 118
           +  A L ++FEKKFN+L    PV  D+    V  ++K+     +E    SK    ++  +
Sbjct: 684 LGSAKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKKKKTGNVSSEPTKTSKGSGDKWSNK 743

Query: 119 MEKMKNLIPFDQMTIEDLNEAFPETKL 145
              +  + P + +  ED N   P  K+
Sbjct: 744 QLFLDAIHPTEAIFSEDRNTMEPVHKV 770


>gi|194294510 kinesin family member C3 isoform 2 [Homo sapiens]
          Length = 826

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 27/132 (20%), Positives = 61/132 (46%), Gaps = 9/132 (6%)

Query: 22  QNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPV 81
           Q ++ ++  L+  +ET+ S  A  P     I     +++  K  L +  + +   L+  V
Sbjct: 228 QEEERLSRRLRDSHETIASLRAQSPPVKYVIKTVEVESSKTKQALSES-QARNQHLQEQV 286

Query: 82  PEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIED-----L 136
              +   QV  E ++ ++S  +  +  +A+I  YE E+E+    +  +  ++E+     +
Sbjct: 287 AMQR---QVLKEMEQQLQSSHQLTARLRAQIAMYESELERAHGQMLEEMQSLEEDKNRAI 343

Query: 137 NEAFPETKLDKK 148
            EAF   +++ K
Sbjct: 344 EEAFARAQVEMK 355


>gi|194294508 kinesin family member C3 isoform 3 [Homo sapiens]
          Length = 687

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 27/132 (20%), Positives = 61/132 (46%), Gaps = 9/132 (6%)

Query: 22  QNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPV 81
           Q ++ ++  L+  +ET+ S  A  P     I     +++  K  L +  + +   L+  V
Sbjct: 89  QEEERLSRRLRDSHETIASLRAQSPPVKYVIKTVEVESSKTKQALSES-QARNQHLQEQV 147

Query: 82  PEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIED-----L 136
              +   QV  E ++ ++S  +  +  +A+I  YE E+E+    +  +  ++E+     +
Sbjct: 148 AMQR---QVLKEMEQQLQSSHQLTARLRAQIAMYESELERAHGQMLEEMQSLEEDKNRAI 204

Query: 137 NEAFPETKLDKK 148
            EAF   +++ K
Sbjct: 205 EEAFARAQVEMK 216


>gi|94536858 kinesin family member C3 isoform 1 [Homo sapiens]
          Length = 833

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 27/132 (20%), Positives = 61/132 (46%), Gaps = 9/132 (6%)

Query: 22  QNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPV 81
           Q ++ ++  L+  +ET+ S  A  P     I     +++  K  L +  + +   L+  V
Sbjct: 228 QEEERLSRRLRDSHETIASLRAQSPPVKYVIKTVEVESSKTKQALSES-QARNQHLQEQV 286

Query: 82  PEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIED-----L 136
              +   QV  E ++ ++S  +  +  +A+I  YE E+E+    +  +  ++E+     +
Sbjct: 287 AMQR---QVLKEMEQQLQSSHQLTARLRAQIAMYESELERAHGQMLEEMQSLEEDKNRAI 343

Query: 137 NEAFPETKLDKK 148
            EAF   +++ K
Sbjct: 344 EEAFARAQVEMK 355


>gi|216548395 dachsous 2 isoform 3 [Homo sapiens]
          Length = 709

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 33  SWNETLTSRLAALPENPPAIDWAYYKANVAKA 64
           S  ETL  R+A L + PP     +YKA+V++A
Sbjct: 520 STEETLLLRVADLNDQPPLFSQQHYKASVSEA 551


>gi|216548385 dachsous 2 isoform 2 [Homo sapiens]
          Length = 1369

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 33  SWNETLTSRLAALPENPPAIDWAYYKANVAKA 64
           S  ETL  R+A L + PP     +YKA+V++A
Sbjct: 520 STEETLLLRVADLNDQPPLFSQQHYKASVSEA 551


>gi|131889097 cancer susceptibility candidate 1 isoform b [Homo
           sapiens]
          Length = 716

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 79  VPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIED 135
           V  P  +YT+ V    K+DVK+  + +S     + E  K+ E+  +LI  +++ +E+
Sbjct: 266 VSTPSKEYTSAVTELVKDDVKNVEKAIS---KEVEEESKQQERGSHLIQEEEIKVEE 319


>gi|131889447 cancer susceptibility candidate 1 isoform c [Homo
           sapiens]
          Length = 690

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 79  VPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIED 135
           V  P  +YT+ V    K+DVK+  + +S     + E  K+ E+  +LI  +++ +E+
Sbjct: 330 VSTPSKEYTSAVTELVKDDVKNVEKAIS---KEVEEESKQQERGSHLIQEEEIKVEE 383


>gi|131888105 cancer susceptibility candidate 1 isoform a [Homo
           sapiens]
          Length = 722

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 79  VPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIED 135
           V  P  +YT+ V    K+DVK+  + +S     + E  K+ E+  +LI  +++ +E+
Sbjct: 272 VSTPSKEYTSAVTELVKDDVKNVEKAIS---KEVEEESKQQERGSHLIQEEEIKVEE 325


>gi|38372919 basigin isoform 1 precursor [Homo sapiens]
          Length = 385

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 21  PQNQKAIASSLKSWNETLTSRLAALPEN-PPAIDWAYYKANVAK-AGLVDDFEKKF 74
           P   KA+ SS +  NE  T+ L    E+ PP  DWA+YK   ++   L++  E +F
Sbjct: 220 PPRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRF 274


>gi|38372923 basigin isoform 4 [Homo sapiens]
          Length = 205

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 21 PQNQKAIASSLKSWNETLTSRLAALPEN-PPAIDWAYYKANVAK-AGLVDDFEKKF 74
          P   KA+ SS +  NE  T+ L    E+ PP  DWA+YK   ++   L++  E +F
Sbjct: 40 PPRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRF 94


>gi|38372925 basigin isoform 2 precursor [Homo sapiens]
          Length = 269

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 21  PQNQKAIASSLKSWNETLTSRLAALPEN-PPAIDWAYYKANVAK-AGLVDDFEKKF 74
           P   KA+ SS +  NE  T+ L    E+ PP  DWA+YK   ++   L++  E +F
Sbjct: 104 PPRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRF 158


>gi|27544939 chromosome 3 open reading frame 10 [Homo sapiens]
          Length = 75

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 12 DWV--AFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAID--WAYYKANVAK 63
          DW    + EII  + K IA  L S++ +  SRLA L E   A++    Y +A V K
Sbjct: 15 DWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTK 70


>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 91  DAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAFPETKL 145
           D E  ED     E    S A++ E E+E E+ +  +P   + I++LN    E KL
Sbjct: 692 DGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKL 746


>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 91  DAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAFPETKL 145
           D E  ED     E    S A++ E E+E E+ +  +P   + I++LN    E KL
Sbjct: 692 DGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKL 746


>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 91  DAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAFPETKL 145
           D E  ED     E    S A++ E E+E E+ +  +P   + I++LN    E KL
Sbjct: 692 DGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKL 746


>gi|239753482 PREDICTED: similar to HSPC300 [Homo sapiens]
          Length = 85

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 12 DWV--AFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAID--WAYYKANVAKAG 65
          DW    + EII  + K IA  L S++ +  SRLA L E   A++    Y +A V+  G
Sbjct: 15 DWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVSLMG 72


>gi|71061468 centromere protein E [Homo sapiens]
          Length = 2701

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 16/101 (15%)

Query: 62   AKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEM-- 119
            AK   +   E K   L   + E +   Q+  +EKE++K   E + + + ++ E  KE+  
Sbjct: 1559 AKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVA 1618

Query: 120  ---EKMKNLIPFDQMT-----------IEDLNEAFPETKLD 146
               E  +    F +MT           IE L E F   KL+
Sbjct: 1619 KMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLN 1659


>gi|40548397 NADP-dependent retinol dehydrogenase/reductase [Homo
           sapiens]
          Length = 319

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 12/75 (16%)

Query: 71  EKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKN------ 124
           E    ALK    E   T  +D  + E+VK  A+WV          EK +  + N      
Sbjct: 63  ESGSTALKAETSERLRTVLLDVTDPENVKRTAQWVKNQVG-----EKGLWGLINNAGVPG 117

Query: 125 -LIPFDQMTIEDLNE 138
            L P D +T+ED  E
Sbjct: 118 VLAPTDWLTLEDYRE 132


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.129    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,106,455
Number of Sequences: 37866
Number of extensions: 240670
Number of successful extensions: 771
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 733
Number of HSP's gapped (non-prelim): 79
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.