Guide to the Human Genome
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Name: CLEC2B Sequence: fasta or formatted (149aa) NCBI GI: 37577107
Description:

C-type lectin, superfamily member 2

Referenced in:

Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          7           2
 C cysteine            5.4          8           1
 D aspartate           6.0          9           2
 E glutamate           4.0          6           2
 F phenylalanine       4.0          6           1
 G glycine             6.7         10           1
 H histidine           2.7          4           1
 I isoleucine          8.7         13           2
 K lysine              8.7         13           2
 L leucine             5.4          8           1
 M methionine          3.4          5           2
 N asparagine          4.7          7           1
 P proline             0.7          1           1
 Q glutamine           2.7          4           1
 R arginine            6.0          9           2
 S serine              7.4         11           2
 T threonine           8.1         12           2
 V valine              2.7          4           1
 W tryptophan          3.4          5           1
 Y tyrosine            4.7          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C-type lectin, superfamily member 2 
CLEC2D                0.377   osteoclast inhibitory lectin isoform 1 
CLEC2A                0.290   C-type lectin domain family 2, member A 
CD69                  0.263   CD69 molecule 
CLEC2D                0.242   osteoclast inhibitory lectin isoform 2 
CLEC4M                0.192   C-type lectin domain family 4, member M isoform 9 [...
CLEC4M                0.192   C-type lectin domain family 4, member M isoform 12 ...
CLEC4M                0.192   C-type lectin domain family 4, member M isoform 2 [...
CLEC4M                0.192   C-type lectin domain family 4, member M isoform 8 [...
CLEC4M                0.192   C-type lectin domain family 4, member M isoform 1 [H...
CLEC4M                0.192   C-type lectin domain family 4, member M isoform 7 [...
CLEC4M                0.192   C-type lectin domain family 4, member M isoform 11 ...
CD209                 0.178   CD209 molecule isoform 8 
CD209                 0.178   CD209 molecule isoform 3 
CD209                 0.178   CD209 molecule isoform 7 
CD209                 0.178   CD209 molecule isoform 6 
CD209                 0.178   CD209 molecule isoform 5 
CD209                 0.178   CD209 molecule isoform 1 
CLEC2L                0.178   C-type lectin domain family 2, member L 
KLRG1                 0.168   killer cell lectin-like receptor subfamily G, member...
CLEC4G                0.165   C-type lectin domain family 4, member G 
CLEC12B               0.165   C-type lectin domain family 12, member B isoform 1 ...
CLEC10A               0.158   C-type lectin, superfamily member 14 isoform 1 [Homo...
CLEC10A               0.158   C-type lectin, superfamily member 14 isoform 2 [Homo...
CD209                 0.148   CD209 molecule isoform 4 
KLRD1                 0.148   killer cell lectin-like receptor subfamily D, membe...
KLRD1                 0.148   killer cell lectin-like receptor subfamily D, member ...
KLRD1                 0.148   killer cell lectin-like receptor subfamily D, member ...
KLRF1                 0.145   killer cell lectin-like receptor subfamily F, member ...
ASGR1                 0.145   asialoglycoprotein receptor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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