Guide to the Human Genome
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Name: CLEC2A Sequence: fasta or formatted (174aa) NCBI GI: 195222725
Description:

C-type lectin domain family 2, member A

Referenced in:

Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         10           1
 C cysteine            3.4          6           1
 D aspartate           6.9         12           2
 E glutamate           2.9          5           1
 F phenylalanine       6.9         12           1
 G glycine             8.0         14           1
 H histidine           2.3          4           1
 I isoleucine         10.9         19           3
 K lysine              7.5         13           1
 L leucine             6.3         11           1
 M methionine          2.9          5           1
 N asparagine          3.4          6           1
 P proline             2.3          4           1
 Q glutamine           2.9          5           1
 R arginine            4.6          8           1
 S serine              7.5         13           2
 T threonine           5.7         10           2
 V valine              2.9          5           1
 W tryptophan          5.2          9           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C-type lectin domain family 2, member A 
CLEC2D                0.335   osteoclast inhibitory lectin isoform 1 
CD69                  0.272   CD69 molecule 
CLEC2D                0.249   osteoclast inhibitory lectin isoform 2 
CLEC2B                0.246   C-type lectin, superfamily member 2 
CLEC2L                0.160   C-type lectin domain family 2, member L 
CLEC10A               0.129   C-type lectin, superfamily member 14 isoform 1 [Homo...
CLEC10A               0.126   C-type lectin, superfamily member 14 isoform 2 [Homo...
KLRG1                 0.123   killer cell lectin-like receptor subfamily G, member...
CLEC4M                0.115   C-type lectin domain family 4, member M isoform 9 [...
CLEC4M                0.115   C-type lectin domain family 4, member M isoform 7 [...
CLEC4M                0.115   C-type lectin domain family 4, member M isoform 12 ...
CLEC4M                0.115   C-type lectin domain family 4, member M isoform 2 [...
CLEC4M                0.115   C-type lectin domain family 4, member M isoform 8 [...
CLEC4M                0.115   C-type lectin domain family 4, member M isoform 11 ...
CLEC4M                0.115   C-type lectin domain family 4, member M isoform 1 [H...
COLEC12               0.112   collectin sub-family member 12 
ASGR2                 0.103   asialoglycoprotein receptor 2 isoform c 
ASGR2                 0.103   asialoglycoprotein receptor 2 isoform b 
ASGR2                 0.103   asialoglycoprotein receptor 2 isoform a 
ASGR2                 0.103   asialoglycoprotein receptor 2 isoform a 
CLEC12A               0.103   myeloid inhibitory C-type lectin-like receptor isofo...
CLEC12A               0.103   myeloid inhibitory C-type lectin-like receptor isofo...
KLRD1                 0.100   killer cell lectin-like receptor subfamily D, membe...
KLRD1                 0.100   killer cell lectin-like receptor subfamily D, member ...
KLRD1                 0.100   killer cell lectin-like receptor subfamily D, member ...
KLRK1                 0.097   NKG2-D type II integral membrane protein 
CLEC5A                0.095   C-type lectin, superfamily member 5 
CLEC4F                0.095   C-type lectin, superfamily member 13 
KLRF1                 0.092   killer cell lectin-like receptor subfamily F, member ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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