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Search of human proteins with 51944950
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51944950 phosducin-like 2 [Homo sapiens]
(241 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51944950 phosducin-like 2 [Homo sapiens] 488 e-138
gi|13129044 phosducin-like 3 [Homo sapiens] 278 2e-75
gi|169216983 PREDICTED: similar to hCG2040277 [Homo sapiens] 135 3e-32
gi|239752276 PREDICTED: similar to hCG2040277 [Homo sapiens] 135 3e-32
gi|239746789 PREDICTED: similar to hCG2040277 [Homo sapiens] 135 3e-32
gi|88758594 phosducin-like [Homo sapiens] 81 9e-16
gi|18104959 thioredoxin domain containing 9 [Homo sapiens] 73 3e-13
gi|32967591 phosducin isoform a [Homo sapiens] 63 2e-10
gi|12408668 phosducin isoform b [Homo sapiens] 60 2e-09
gi|95113651 glutaredoxin 3 [Homo sapiens] 37 0.015
gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens] 36 0.034
gi|239755011 PREDICTED: ankyrin repeat domain 18B [Homo sapiens] 35 0.045
gi|239749555 PREDICTED: ankyrin repeat domain 18B [Homo sapiens] 35 0.045
gi|239743705 PREDICTED: ankyrin repeat domain 18B [Homo sapiens] 35 0.045
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 33 0.17
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens] 33 0.17
gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens] 33 0.17
gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens] 33 0.17
gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens] 33 0.17
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 33 0.22
gi|239755901 PREDICTED: chromosome 12 open reading frame 64 [Hom... 33 0.22
gi|239750386 PREDICTED: chromosome 12 open reading frame 64 [Hom... 33 0.22
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 33 0.22
gi|239745127 PREDICTED: similar to Putative golgin subfamily A m... 33 0.22
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 33 0.22
gi|239744688 PREDICTED: hypothetical protein LOC283310 [Homo sap... 33 0.22
gi|51317384 GLE1 RNA export mediator homolog isoform 1 [Homo sap... 33 0.29
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 33 0.29
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 33 0.29
gi|51873049 hypothetical protein LOC8603 [Homo sapiens] 33 0.29
>gi|51944950 phosducin-like 2 [Homo sapiens]
Length = 241
Score = 488 bits (1257), Expect = e-138
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDE 60
MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDE
Sbjct: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDE 60
Query: 61 FDEEDMQAVETYRKKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEEDVWVIIHLYRS 120
FDEEDMQAVETYRKKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEEDVWVIIHLYRS
Sbjct: 61 FDEEDMQAVETYRKKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEEDVWVIIHLYRS 120
Query: 121 SIPMCLLVNQHLSLLARKFPETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGII 180
SIPMCLLVNQHLSLLARKFPETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGII
Sbjct: 121 SIPMCLLVNQHLSLLARKFPETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGII 180
Query: 181 ECGGINLKLEELEWKLAEVGAIQTDLEENPRKDMVDMMVSSIRNTSIHDDSDSSNSDNDT 240
ECGGINLKLEELEWKLAEVGAIQTDLEENPRKDMVDMMVSSIRNTSIHDDSDSSNSDNDT
Sbjct: 181 ECGGINLKLEELEWKLAEVGAIQTDLEENPRKDMVDMMVSSIRNTSIHDDSDSSNSDNDT 240
Query: 241 K 241
K
Sbjct: 241 K 241
>gi|13129044 phosducin-like 3 [Homo sapiens]
Length = 239
Score = 278 bits (712), Expect = 2e-75
Identities = 139/236 (58%), Positives = 178/236 (75%), Gaps = 3/236 (1%)
Query: 1 MQDPNEDTEWNDILRDFGILPPKEESKD--EIEEMVLRLQKEAMVKPFEKMTLAQLKEAE 58
MQDPN DTEWNDILR GILPPKE K+ E E R+ ++++VK +E MTL +L++ E
Sbjct: 1 MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHE 60
Query: 59 DEFDEEDMQAVETYRKKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEEDVWVIIHLY 118
DEF+EED +A+E YR++RL EWKA K K KFGE+ EISG YV EVT A E +WVI+HLY
Sbjct: 61 DEFNEEDERAIEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLY 120
Query: 119 RSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIG 178
+ IP+C L+NQHLS LARKFP+ KF+KAI +CI +Y D LPTIFVY G I+A+FIG
Sbjct: 121 KQGIPLCALINQHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIG 180
Query: 179 IIECGGINLKLEELEWKLAEVGAIQTDLEENPRKDMVDMMVSSIRNTSI-HDDSDS 233
+ GG+NL +ELEWKL+E GAI TDLEENP+K + D+++SS+R + + DSDS
Sbjct: 181 PLVFGGMNLTRDELEWKLSESGAIMTDLEENPKKPIEDVLLSSVRRSVLMKRDSDS 236
>gi|169216983 PREDICTED: similar to hCG2040277 [Homo sapiens]
Length = 70
Score = 135 bits (340), Expect = 3e-32
Identities = 68/71 (95%), Positives = 69/71 (97%), Gaps = 1/71 (1%)
Query: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDE 60
MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVL LQKEAMVKPFEKMTLAQLKEAEDE
Sbjct: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDE 60
Query: 61 FDEEDMQAVET 71
FD EDMQA+ET
Sbjct: 61 FD-EDMQAIET 70
>gi|239752276 PREDICTED: similar to hCG2040277 [Homo sapiens]
Length = 70
Score = 135 bits (340), Expect = 3e-32
Identities = 68/71 (95%), Positives = 69/71 (97%), Gaps = 1/71 (1%)
Query: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDE 60
MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVL LQKEAMVKPFEKMTLAQLKEAEDE
Sbjct: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDE 60
Query: 61 FDEEDMQAVET 71
FD EDMQA+ET
Sbjct: 61 FD-EDMQAIET 70
>gi|239746789 PREDICTED: similar to hCG2040277 [Homo sapiens]
Length = 70
Score = 135 bits (340), Expect = 3e-32
Identities = 68/71 (95%), Positives = 69/71 (97%), Gaps = 1/71 (1%)
Query: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDE 60
MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVL LQKEAMVKPFEKMTLAQLKEAEDE
Sbjct: 1 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEAEDE 60
Query: 61 FDEEDMQAVET 71
FD EDMQA+ET
Sbjct: 61 FD-EDMQAIET 70
>gi|88758594 phosducin-like [Homo sapiens]
Length = 301
Score = 80.9 bits (198), Expect = 9e-16
Identities = 58/210 (27%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 28 DEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQEWKA-LKKK 86
DE EE + QK+ K KMTL + ++ D+E+ ++ YRK+R++E + L K
Sbjct: 100 DEEEEQ--QKQKDLQEKISGKMTLKEFAIMNEDQDDEEF--LQQYRKQRMEEMRQQLHKG 155
Query: 87 QKFGELREIS-GNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKF- 144
+F ++ EIS G +++ + ++ + +++H+Y IP +N + LA ++P KF
Sbjct: 156 PQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIPGTEAMNGCMICLAAEYPAVKFC 215
Query: 145 -VKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEVGAIQ 203
VK+ V + N LP + +YK G++ F+ + + G + +LE L E G +
Sbjct: 216 KVKSSVIGASSQFTRNALPALLIYKGGELIGNFVRVTDQLGDDFFAVDLEAFLQEFGLL- 274
Query: 204 TDLEENPRKDMVDMMVSSIRNTSIHDDSDS 233
P K++ ++++S+RN++ DS
Sbjct: 275 ------PEKEV--LVLTSVRNSATCHSEDS 296
>gi|18104959 thioredoxin domain containing 9 [Homo sapiens]
Length = 226
Score = 72.8 bits (177), Expect = 3e-13
Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 29/229 (12%)
Query: 37 LQKEAMVKPFEKMTLAQL----KEAEDEFDEE-------DMQAVETYRKKRLQEW-KALK 84
++ +A V F K+ QL K E+ D E D +E ++KRLQ KA +
Sbjct: 1 MEADASVDMFSKVLEHQLLQTTKLVEEHLDSEIQKLDQMDEDELERLKEKRLQALRKAQQ 60
Query: 85 KKQKF-----GELREI-SGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARK 138
+KQ++ GE REI S + EV +E V+ H YR S C ++++HL++L++K
Sbjct: 61 QKQEWLSKGHGEYREIPSERDFFQEVKESEN---VVCHFYRDSTFRCKILDRHLAILSKK 117
Query: 139 FPETKFVKAIVNSC---IQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGI-NLKLEELEW 194
ETKF+K V + H +PT+ + K+G+ + +G + G + E LEW
Sbjct: 118 HLETKFLKLNVEKAPFLCERLHIKVIPTLALLKDGKTQDYVVGFTDLGNTDDFTTETLEW 177
Query: 195 KL--AEVGAIQTDLEENP--RKDMVDMMVSSIRNTSIHDDSDSSNSDND 239
+L +++ +L E P + + + +I S+SD+D
Sbjct: 178 RLGSSDILNYSGNLMEPPFQNQKKFGTNFTKLEKKTIRGKKYDSDSDDD 226
>gi|32967591 phosducin isoform a [Homo sapiens]
Length = 246
Score = 63.2 bits (152), Expect = 2e-10
Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 19 ILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQ 78
I P K+E ++ R K++ + KM++ + + E +ED + YR++ +Q
Sbjct: 42 IPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHKE--KEDENCLRKYRRQCMQ 99
Query: 79 EW-KALKKKQKFGELREI-SGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLA 136
+ + L ++G + E+ +G Q++ + + +++H+Y I C +N L+ LA
Sbjct: 100 DMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLA 159
Query: 137 RKFPETKF--VKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIE 181
++P KF +KA + + LPT+ +YK G++ + FI + E
Sbjct: 160 AEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAE 206
>gi|12408668 phosducin isoform b [Homo sapiens]
Length = 194
Score = 59.7 bits (143), Expect = 2e-09
Identities = 36/147 (24%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 39 KEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQEW-KALKKKQKFGELREI-S 96
K++ + KM++ + + E +ED + YR++ +Q+ + L ++G + E+ +
Sbjct: 10 KDSKERVSRKMSIQEYELIHKE--KEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELET 67
Query: 97 GNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKF--VKAIVNSCIQ 154
G Q++ + + +++H+Y I C +N L+ LA ++P KF +KA
Sbjct: 68 GKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGD 127
Query: 155 HYHDNCLPTIFVYKNGQIEAKFIGIIE 181
+ + LPT+ +YK G++ + FI + E
Sbjct: 128 RFSLDVLPTLLIYKGGELISNFISVAE 154
>gi|95113651 glutaredoxin 3 [Homo sapiens]
Length = 335
Score = 37.0 bits (84), Expect = 0.015
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 92 LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAI--- 148
+ E+ E+ + +++H + P C +N+ ++ LA++ P+ FVK
Sbjct: 13 VEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEG 72
Query: 149 VNSCIQHYHDNCLPTIFVYKNGQ 171
V + Y + +PT +KN Q
Sbjct: 73 VPEVSEKYEISSVPTFLFFKNSQ 95
>gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens]
Length = 561
Score = 35.8 bits (81), Expect = 0.034
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 24 EESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQEWKAL 83
EE K +EE +L L+ E L++L+E + E DE MQAVE + LQE
Sbjct: 490 EEDKKMLEEEILNLKTHMENSMVE---LSKLQEYKSELDERAMQAVEKLEEIHLQEQAEH 546
Query: 84 KKK 86
KK+
Sbjct: 547 KKQ 549
>gi|239755011 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]
Length = 1363
Score = 35.4 bits (80), Expect = 0.045
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 24 EESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQEWKAL 83
E+ K +EE VL L K M K + + L +++E + E DE MQA+E + LQ+
Sbjct: 900 EKDKKMLEEKVLNL-KTHMEK--DMVELGKVQEYKSELDERAMQAIEKLEEIHLQKQAEY 956
Query: 84 KK-------------KQKFGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQ 130
+K K+K L+++ +++ A EDV + Y+ + + L N
Sbjct: 957 EKQLEQLNKDNTASLKKKELTLKDVECK--FSKMKTAYEDVTTELEEYKEAFAVALKANS 1014
Query: 131 HLS 133
+S
Sbjct: 1015 SMS 1017
>gi|239749555 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]
Length = 1366
Score = 35.4 bits (80), Expect = 0.045
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 24 EESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQEWKAL 83
E+ K +EE VL L K M K + + L +++E + E DE MQA+E + LQ+
Sbjct: 929 EKDKKMLEEKVLNL-KTHMEK--DMVELGKVQEYKSELDERAMQAIEKLEEIHLQKQAEY 985
Query: 84 KK-------------KQKFGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQ 130
+K K+K L+++ +++ A EDV + Y+ + + L N
Sbjct: 986 EKQLEQLNKDNTASLKKKELTLKDVECK--FSKMKTAYEDVTTELEEYKEAFAVALKANS 1043
Query: 131 HLS 133
+S
Sbjct: 1044 SMS 1046
>gi|239743705 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]
Length = 1139
Score = 35.4 bits (80), Expect = 0.045
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 24 EESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQEWKAL 83
E+ K +EE VL L K M K + + L +++E + E DE MQA+E + LQ+
Sbjct: 929 EKDKKMLEEKVLNL-KTHMEK--DMVELGKVQEYKSELDERAMQAIEKLEEIHLQKQAEY 985
Query: 84 KK-------------KQKFGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQ 130
+K K+K L+++ +++ A EDV + Y+ + + L N
Sbjct: 986 EKQLEQLNKDNTASLKKKELTLKDVECK--FSKMKTAYEDVTTELEEYKEAFAVALKANS 1043
Query: 131 HLS 133
+S
Sbjct: 1044 SMS 1046
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 33.5 bits (75), Expect = 0.17
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 7 DTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDM 66
+ E ND +D I + + KD+ +++ KE + K L + + ED ++
Sbjct: 769 ENEKND--KDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQ 826
Query: 67 QAVETYRKK--RLQEW-KALKKKQKFGELREISGNQYVNEVTNAEEDV 111
Q ++ RKK R++E +AL++ + RE+ Q + TNAE+ V
Sbjct: 827 QLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQV 874
>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
Length = 1088
Score = 33.5 bits (75), Expect = 0.17
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 7 DTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDM 66
+ E ND +D I + + KD+ +++ KE + K L + + ED ++
Sbjct: 741 ENEKND--KDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQ 798
Query: 67 QAVETYRKK--RLQEW-KALKKKQKFGELREISGNQYVNEVTNAEEDV 111
Q ++ RKK R++E +AL++ + RE+ Q + TNAE+ V
Sbjct: 799 QLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQV 846
>gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 33.5 bits (75), Expect = 0.17
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 7 DTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAED-EFDEED 65
D E I + +L K + + E+ E QKE + K ++ + +EAE+ E E+
Sbjct: 459 DEEKARIHAETALLMEKNKQEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITEKQ 518
Query: 66 MQAVETYRKKRLQEWKALKKKQKFGELREISG----NQYVNEVTNAEEDV 111
+A E KK ++ K K+ +EI+G ++ +E ++A++ V
Sbjct: 519 QKAKEEMEKKESEQAKKEDKETSAKRGKEITGVKRQSKSEHETSDAKKSV 568
>gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 33.5 bits (75), Expect = 0.17
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 7 DTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAED-EFDEED 65
D E I + +L K + + E+ E QKE + K ++ + +EAE+ E E+
Sbjct: 459 DEEKARIHAETALLMEKNKQEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITEKQ 518
Query: 66 MQAVETYRKKRLQEWKALKKKQKFGELREISG----NQYVNEVTNAEEDV 111
+A E KK ++ K K+ +EI+G ++ +E ++A++ V
Sbjct: 519 QKAKEEMEKKESEQAKKEDKETSAKRGKEITGVKRQSKSEHETSDAKKSV 568
>gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 33.5 bits (75), Expect = 0.17
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 7 DTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAED-EFDEED 65
D E I + +L K + + E+ E QKE + K ++ + +EAE+ E E+
Sbjct: 459 DEEKARIHAETALLMEKNKQEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITEKQ 518
Query: 66 MQAVETYRKKRLQEWKALKKKQKFGELREISG----NQYVNEVTNAEEDV 111
+A E KK ++ K K+ +EI+G ++ +E ++A++ V
Sbjct: 519 QKAKEEMEKKESEQAKKEDKETSAKRGKEITGVKRQSKSEHETSDAKKSV 568
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 33.1 bits (74), Expect = 0.22
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 9 EWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQ--LKEAEDEFDEEDM 66
EW + +++ ++E K +E +R Q+E M + EKM + + E E++ ++
Sbjct: 311 EWEEKIQEQEEKIREQEEKIREQEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKMRRQEE 370
Query: 67 QAVETYRKKRLQEWKALKKKQKFGELRE 94
E K R QE +K++K EL E
Sbjct: 371 MMWEKEEKMRRQEEMMWEKEEKIRELEE 398
Score = 32.7 bits (73), Expect = 0.29
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 23 KEESKDEIEEMVLRLQKEAMVKPFEKMTLAQ--LKEAEDEFDEEDMQAVETYRKKRLQEW 80
++E K +E +R Q+E + EKM + ++E E++ E++ + E K R QE
Sbjct: 581 EQEEKVWRQEEKIREQEEKRQEQEEKMWKQEEKIREQEEKIQEQEEKIREQEEKIREQEE 640
Query: 81 KALKKKQKFGELREISGNQYVNEVTNAEEDVW 112
++++K GE E Q ++ EE +W
Sbjct: 641 MTQEQEEKMGEQEEKMCEQ-EEKMQEQEETMW 671
Score = 28.9 bits (63), Expect = 4.2
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 23 KEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLK--EAEDEFDEEDMQAVETYRKKRLQEW 80
++E K +E +R Q+E + EKM + K E E++ E++ K R QE
Sbjct: 623 EQEEKIREQEEKIREQEEMTQEQEEKMGEQEEKMCEQEEKMQEQEETMWRQEEKIREQEK 682
Query: 81 KALKKKQKFGELREISGNQYVNEVTNAEEDVW 112
K ++++K E E+ Q EE +W
Sbjct: 683 KIREQEEKIREQEEMMQEQ--------EEKMW 706
Score = 27.7 bits (60), Expect = 9.3
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 20 LPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQE 79
L K +++I E + Q+E ++ EK + K E E+ + E R++ +
Sbjct: 396 LEEKMHEQEKIREQEEKRQEEEKIREQEKRQEQEAKMWRQE--EKIREQEEKIREQEKKM 453
Query: 80 WKALKKKQKFGELREISGNQYVNEVTNAEEDV 111
W+ +K + ++RE Q E+ EE +
Sbjct: 454 WRQEEKIHEQEKIREEEKRQEQEEMWRQEEKI 485
>gi|239755901 PREDICTED: chromosome 12 open reading frame 64 [Homo
sapiens]
Length = 2250
Score = 33.1 bits (74), Expect = 0.22
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 140 PETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEEL 192
PE KF + +N C+ +H C VY+ G++ G+ +C +K +EL
Sbjct: 723 PEGKFYEDTLNFCVPIFHCRCHYRGSVYQPGELIPTPSGLCQCSNGTVKCDEL 775
>gi|239750386 PREDICTED: chromosome 12 open reading frame 64 [Homo
sapiens]
Length = 2250
Score = 33.1 bits (74), Expect = 0.22
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 140 PETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEEL 192
PE KF + +N C+ +H C VY+ G++ G+ +C +K +EL
Sbjct: 723 PEGKFYEDTLNFCVPIFHCRCHYRGSVYQPGELIPTPSGLCQCSNGTVKCDEL 775
>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 33.1 bits (74), Expect = 0.22
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 23 KEESKDEIEEMVLRLQKEAMVKPFEKM--TLAQLKEAEDEFDEEDMQAVETYRKKRLQEW 80
++E K +E+ +R Q+E M + EKM +++E ED+ ++ + E K R QE
Sbjct: 308 EQEEKMCEQELKIREQEEKMWRQEEKMHEQEEKIREQEDKMWRQEEKIREQEEKIREQEE 367
Query: 81 KALKKKQKFGELREISGNQYVNEVTNAEEDVW 112
K ++++K E E ++ EE++W
Sbjct: 368 KMWRQEEKIREQDE--------KIQEQEEEMW 391
Score = 29.6 bits (65), Expect = 2.5
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 24 EESKDEIEEMVLRLQKEAMVKPFEKMTLAQ---LKEAEDEFDEEDMQAVETYRKKRLQEW 80
E+ +++ EEM ++E ++ E+M Q L+E E++ EE+ + E K + QE
Sbjct: 420 EKIREQEEEM---WRQEEKIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQEEKIQRQEE 476
Query: 81 KALKKKQKFGELREISGNQYVNEVTNAEEDVW 112
K ++++K ++ + ++ EE +W
Sbjct: 477 KIQEQEEKTWRQEKLLKQE--EKIWEQEEKMW 506
Score = 29.3 bits (64), Expect = 3.2
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 23 KEESKDEIEEMVLRLQKEAMVKPFEKMTLA--QLKEAEDEFDEEDMQAVETYRKKRLQEW 80
++E K +E +R Q+E M + EK+ +++E E+E ++ + E K++ + W
Sbjct: 350 RQEEKIREQEEKIREQEEKMWRQEEKIREQDEKIQEQEEEMWRQEEKIREQEEKRQEKMW 409
Query: 81 KALKKKQKFGELREISGNQYVNEVTNAEEDVW 112
+ KK ++ E ++ EE++W
Sbjct: 410 RQEKKMREQDE-----------KIREQEEEMW 430
>gi|239745127 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 33.1 bits (74), Expect = 0.22
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 23 KEESKDEIEEMVLRLQKEAMVKPFEKM--TLAQLKEAEDEFDEEDMQAVETYRKKRLQEW 80
++E K +E+ +R Q+E M + EKM +++E ED+ ++ + E K R QE
Sbjct: 308 EQEEKMCEQELKIREQEEKMWRQEEKMHEQEEKIREQEDKMWRQEEKIREQEEKIREQEE 367
Query: 81 KALKKKQKFGELREISGNQYVNEVTNAEEDVW 112
K ++++K E E ++ EE++W
Sbjct: 368 KMWRQEEKIREQDE--------KIQEQEEEMW 391
Score = 29.6 bits (65), Expect = 2.5
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 24 EESKDEIEEMVLRLQKEAMVKPFEKMTLAQ---LKEAEDEFDEEDMQAVETYRKKRLQEW 80
E+ +++ EEM ++E ++ E+M Q L+E E++ EE+ + E K + QE
Sbjct: 420 EKIREQEEEM---WRQEEKIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQEEKIQRQEE 476
Query: 81 KALKKKQKFGELREISGNQYVNEVTNAEEDVW 112
K ++++K ++ + ++ EE +W
Sbjct: 477 KIQEQEEKTWRQEKLLKQE--EKIWEQEEKMW 506
Score = 29.3 bits (64), Expect = 3.2
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 23 KEESKDEIEEMVLRLQKEAMVKPFEKMTLA--QLKEAEDEFDEEDMQAVETYRKKRLQEW 80
++E K +E +R Q+E M + EK+ +++E E+E ++ + E K++ + W
Sbjct: 350 RQEEKIREQEEKIREQEEKMWRQEEKIREQDEKIQEQEEEMWRQEEKIREQEEKRQEKMW 409
Query: 81 KALKKKQKFGELREISGNQYVNEVTNAEEDVW 112
+ KK ++ E ++ EE++W
Sbjct: 410 RQEKKMREQDE-----------KIREQEEEMW 430
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 33.1 bits (74), Expect = 0.22
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 23 KEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLK--EAEDEFDEEDMQAVETYRKKRLQEW 80
++E K +E +R Q+E M + EKM + K E E+E E++ + K R QE
Sbjct: 387 RQEEKIREQEEKIREQEEMMQEQEEKMGEQEEKMWEQEEEMQEQEEKMRRQEEKIREQEK 446
Query: 81 KALKKKQKFGELREISGNQ 99
K ++++K E E+ Q
Sbjct: 447 KIREQEEKIREQEEMMQEQ 465
Score = 30.8 bits (68), Expect = 1.1
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 23 KEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQEWKA 82
++E K +E +R Q+E M + EKM E E + E++ + E K R QE K
Sbjct: 443 EQEKKIREQEEKIREQEEMMQEQEEKM-----GEQEGKMCEQEAKMQEQEEKMRRQEEKI 497
Query: 83 LKKKQKFGELREISGNQYVNEVTNAEEDVW 112
++++K E E Q + EE +W
Sbjct: 498 REQEKKIREQEEKIREQ-EEMMQEQEEKMW 526
Score = 28.5 bits (62), Expect = 5.5
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 23 KEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLK--EAEDEFDEEDMQAVETYRKKRLQEW 80
++E K +E +R Q+E M + EKM + K E E++ E++ + K R QE
Sbjct: 499 EQEKKIREQEEKIREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEKMRRQEEKMREQEV 558
Query: 81 KALKKKQKFGE 91
+ ++++K E
Sbjct: 559 RLRQQEEKMQE 569
Score = 28.1 bits (61), Expect = 7.1
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 23 KEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQE--- 79
KEE EEM+ +KE ++ E+ Q K E E ++ + + K++ QE
Sbjct: 328 KEEKMRRQEEMMW--EKEEKIRELEEKMHEQEKIREQEEKRQEEEKIREQEKRQEQEAKM 385
Query: 80 W----KALKKKQKFGELREISGNQYVNEVTNAEEDVW 112
W K ++++K E E+ Q ++ EE +W
Sbjct: 386 WRQEEKIREQEEKIREQEEMMQEQ-EEKMGEQEEKMW 421
>gi|239744688 PREDICTED: hypothetical protein LOC283310 [Homo
sapiens]
Length = 2250
Score = 33.1 bits (74), Expect = 0.22
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 140 PETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEEL 192
PE KF + +N C+ +H C VY+ G++ G+ +C +K +EL
Sbjct: 723 PEGKFYEDTLNFCVPIFHCRCHYRGSVYQPGELIPTPSGLCQCSNGTVKCDEL 775
>gi|51317384 GLE1 RNA export mediator homolog isoform 1 [Homo
sapiens]
Length = 698
Score = 32.7 bits (73), Expect = 0.29
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 23 KEESKDEIEEMVLR----LQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRK---- 74
K+ES+ E MVL+ ++ E V+ +E + + E + EE + V+ +
Sbjct: 109 KDESQ-HTESMVLQSSRGIKVEGCVRMYELVHRMKGTEGLRLWQEEQERKVQALSEMASE 167
Query: 75 --KRLQEWKALKKKQKFGELREI 95
KR EWK LK+ ++F +LRE+
Sbjct: 168 QLKRFDEWKELKQHKEFQDLREV 190
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 32.7 bits (73), Expect = 0.29
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 24 EESKDEIEEMVLRLQKE-AMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQEWKA 82
E+ K E+EE + + +E A+ EK A+ KE E E +EE++ A KK + A
Sbjct: 463 EDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAA-----KKSPVKATA 517
Query: 83 LKKKQKFGELREISGNQYVNE 103
+ K++ GE E G + E
Sbjct: 518 PEVKEEEGEKEEEEGQEEEEE 538
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 32.7 bits (73), Expect = 0.29
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 24 EESKDEIEEMVLRLQKE-AMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQEWKA 82
E+ K E+EE + + +E A+ EK A+ KE E E +EE++ A KK + A
Sbjct: 87 EDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAA-----KKSPVKATA 141
Query: 83 LKKKQKFGELREISGNQYVNE 103
+ K++ GE E G + E
Sbjct: 142 PEVKEEEGEKEEEEGQEEEEE 162
>gi|51873049 hypothetical protein LOC8603 [Homo sapiens]
Length = 1224
Score = 32.7 bits (73), Expect = 0.29
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 36 RLQKEAMVKPFEKMTLAQLK--EAEDEFDEEDMQAVETYRKKRLQEWKALKKKQK 88
RL+ EA + + Q + E EDE +EED E R + LQ+ +A+KKK+K
Sbjct: 884 RLEAEARAREHLHLQEEQRRREEEEDEEEEEDRFKEEFQRLQELQKLRAVKKKKK 938
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,110,342
Number of Sequences: 37866
Number of extensions: 388805
Number of successful extensions: 1744
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 259
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.