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Search of human proteins with 51243049
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51243049 lymphocyte antigen 6 complex G6D [Homo sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51243049 lymphocyte antigen 6 complex G6D [Homo sapiens] 282 5e-77
gi|19424138 sperm acrosomal membrane protein 14 [Homo sapiens] 37 0.006
gi|37221175 PH domain and leucine rich repeat protein phosphatas... 29 0.97
gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sap... 29 0.97
gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo sa... 29 0.97
gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sap... 29 0.97
gi|187829185 CD59 antigen preproprotein [Homo sapiens] 28 1.6
gi|187829183 CD59 antigen preproprotein [Homo sapiens] 28 1.6
gi|10835165 CD59 antigen preproprotein [Homo sapiens] 28 1.6
gi|42716299 CD59 antigen preproprotein [Homo sapiens] 28 1.6
gi|187829070 CD59 antigen preproprotein [Homo sapiens] 28 1.6
gi|42761474 CD59 antigen preproprotein [Homo sapiens] 28 1.6
gi|42716302 CD59 antigen preproprotein [Homo sapiens] 28 1.6
gi|187828910 CD59 antigen preproprotein [Homo sapiens] 28 1.6
gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens] 28 1.6
gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens] 28 1.6
gi|116812565 zinc finger protein, subfamily 1A, 5 [Homo sapiens] 28 1.6
gi|122937436 tetratricopeptide repeat domain 39A isoform 2 [Homo... 28 2.2
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 28 2.2
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 28 2.2
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 28 2.2
gi|31791002 keratin associated protein 13-3 [Homo sapiens] 28 2.2
gi|169171895 PREDICTED: similar to EF-hand calcium binding domai... 28 2.8
gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens] 28 2.8
gi|81295410 acid phosphatase-like 2 [Homo sapiens] 28 2.8
gi|22748649 acid phosphatase-like 2 [Homo sapiens] 28 2.8
gi|30181233 leucine-rich repeats and calponin homology (CH) doma... 28 2.8
gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens] 27 3.7
gi|7706083 complement component 1, r subcomponent-like precursor... 27 3.7
gi|62912479 major histocompatibility complex, class I, E precurs... 27 3.7
>gi|51243049 lymphocyte antigen 6 complex G6D [Homo sapiens]
Length = 133
Score = 282 bits (722), Expect = 5e-77
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MKPQFVGILLSSLLGAALGNRMRCYNCGGSPSSSCKEAVTTCGEGRPQPGLEQIKLPGNP 60
MKPQFVGILLSSLLGAALGNRMRCYNCGGSPSSSCKEAVTTCGEGRPQPGLEQIKLPGNP
Sbjct: 1 MKPQFVGILLSSLLGAALGNRMRCYNCGGSPSSSCKEAVTTCGEGRPQPGLEQIKLPGNP 60
Query: 61 PVTLIHQHPACVAAHHCNQVETESVGDVTYPAHRDCYLGDLCNSAVASHVAPAGILAAAA 120
PVTLIHQHPACVAAHHCNQVETESVGDVTYPAHRDCYLGDLCNSAVASHVAPAGILAAAA
Sbjct: 61 PVTLIHQHPACVAAHHCNQVETESVGDVTYPAHRDCYLGDLCNSAVASHVAPAGILAAAA 120
Query: 121 TALTCLLPGLWSG 133
TALTCLLPGLWSG
Sbjct: 121 TALTCLLPGLWSG 133
>gi|19424138 sperm acrosomal membrane protein 14 [Homo sapiens]
Length = 124
Score = 36.6 bits (83), Expect = 0.006
Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Query: 24 CYNCGGSPSSSCKEAVTTCGEGRPQPGLEQIKLPGNPPVTLIHQHPACVAAHHCNQVETE 83
C C + S C CG+ + PG PV + C+ A C E
Sbjct: 23 CVFCELTDSMQCPGTYMHCGDDEDCFTGHGVA-PGTGPVI----NKGCLRATSCGLEEPV 77
Query: 84 SVGDVTYPAHRDCYLGDLCNSAVASHVAPAGILAAAATALTCLLP 128
S VTY +C G LCN A +S G + A L LLP
Sbjct: 78 SYRGVTYSLTTNCCTGRLCNRAPSSQT--VGATTSLALGLGMLLP 120
>gi|37221175 PH domain and leucine rich repeat protein phosphatase
[Homo sapiens]
Length = 1205
Score = 29.3 bits (64), Expect = 0.97
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 34 SCKE-AVTTCGEGRPQPGLEQIKLPGNPPVTLIHQHPACVAAHHCNQVETESVGDVT 89
SC E + T E P P L+++ L GNP + L H+ + C +++ S GD +
Sbjct: 601 SCNELSEVTLPENLP-PKLQELDLTGNPRLVLDHKTLELLNNIRCFKIDQPSTGDAS 656
>gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sapiens]
Length = 3667
Score = 29.3 bits (64), Expect = 0.97
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 76 HCNQVETESVGDVTYPAHRDCYLGDLCNSAVASHVAPAGILAAAATALTCLLPGLWSG 133
HC+ T + GD P H + + + G + + TCL G W+G
Sbjct: 3007 HCSGDATGTCGDPGTPGHGSRQESNFRTKSTVRYACDTGYILHGSEERTCLANGSWTG 3064
>gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo
sapiens]
Length = 3538
Score = 29.3 bits (64), Expect = 0.97
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 76 HCNQVETESVGDVTYPAHRDCYLGDLCNSAVASHVAPAGILAAAATALTCLLPGLWSG 133
HC+ T + GD P H + + + G + + TCL G W+G
Sbjct: 2878 HCSGDATGTCGDPGTPGHGSRQESNFRTKSTVRYACDTGYILHGSEERTCLANGSWTG 2935
>gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sapiens]
Length = 3707
Score = 29.3 bits (64), Expect = 0.97
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 76 HCNQVETESVGDVTYPAHRDCYLGDLCNSAVASHVAPAGILAAAATALTCLLPGLWSG 133
HC+ T + GD P H + + + G + + TCL G W+G
Sbjct: 3047 HCSGDATGTCGDPGTPGHGSRQESNFRTKSTVRYACDTGYILHGSEERTCLANGSWTG 3104
>gi|187829185 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 7 GILLSSLLGAALGNRMRCYNCGGSPSSSCKEAV 39
G+LL + G+ ++CYNC +P++ CK AV
Sbjct: 11 GLLLVLAVFCHSGHSLQCYNC-PNPTADCKTAV 42
>gi|187829183 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 7 GILLSSLLGAALGNRMRCYNCGGSPSSSCKEAV 39
G+LL + G+ ++CYNC +P++ CK AV
Sbjct: 11 GLLLVLAVFCHSGHSLQCYNC-PNPTADCKTAV 42
>gi|10835165 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 7 GILLSSLLGAALGNRMRCYNCGGSPSSSCKEAV 39
G+LL + G+ ++CYNC +P++ CK AV
Sbjct: 11 GLLLVLAVFCHSGHSLQCYNC-PNPTADCKTAV 42
>gi|42716299 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 7 GILLSSLLGAALGNRMRCYNCGGSPSSSCKEAV 39
G+LL + G+ ++CYNC +P++ CK AV
Sbjct: 11 GLLLVLAVFCHSGHSLQCYNC-PNPTADCKTAV 42
>gi|187829070 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 7 GILLSSLLGAALGNRMRCYNCGGSPSSSCKEAV 39
G+LL + G+ ++CYNC +P++ CK AV
Sbjct: 11 GLLLVLAVFCHSGHSLQCYNC-PNPTADCKTAV 42
>gi|42761474 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 7 GILLSSLLGAALGNRMRCYNCGGSPSSSCKEAV 39
G+LL + G+ ++CYNC +P++ CK AV
Sbjct: 11 GLLLVLAVFCHSGHSLQCYNC-PNPTADCKTAV 42
>gi|42716302 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 7 GILLSSLLGAALGNRMRCYNCGGSPSSSCKEAV 39
G+LL + G+ ++CYNC +P++ CK AV
Sbjct: 11 GLLLVLAVFCHSGHSLQCYNC-PNPTADCKTAV 42
>gi|187828910 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 7 GILLSSLLGAALGNRMRCYNCGGSPSSSCKEAV 39
G+LL + G+ ++CYNC +P++ CK AV
Sbjct: 11 GLLLVLAVFCHSGHSLQCYNC-PNPTADCKTAV 42
>gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 28.5 bits (62), Expect = 1.6
Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 27/138 (19%)
Query: 5 FVGILLSSLLGAALGNRMRCYNCGGSPS-------SSCKEAVTTCGEGRPQPGLEQIKLP 57
F+ +LL++LLG + + C++C S + C + C G+ +
Sbjct: 4 FLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL--- 60
Query: 58 GNPPVTLIHQ-----HPACVAAHHCNQVETESVGDVTYPAHRDCYLGDLCNSAVASHVAP 112
VT H PAC N V S+G C LCN + A
Sbjct: 61 ----VTFGHSLSKTCSPACPIPEGVN-VGVASMG-------ISCCQSFLCNFSAADGGLR 108
Query: 113 AGILAAAATALTCLLPGL 130
A + A L LLP L
Sbjct: 109 ASVTLLGAGLLLSLLPAL 126
>gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 28.5 bits (62), Expect = 1.6
Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 27/138 (19%)
Query: 5 FVGILLSSLLGAALGNRMRCYNCGGSPS-------SSCKEAVTTCGEGRPQPGLEQIKLP 57
F+ +LL++LLG + + C++C S + C + C G+ +
Sbjct: 4 FLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL--- 60
Query: 58 GNPPVTLIHQ-----HPACVAAHHCNQVETESVGDVTYPAHRDCYLGDLCNSAVASHVAP 112
VT H PAC N V S+G C LCN + A
Sbjct: 61 ----VTFGHSLSKTCSPACPIPEGVN-VGVASMG-------ISCCQSFLCNFSAADGGLR 108
Query: 113 AGILAAAATALTCLLPGL 130
A + A L LLP L
Sbjct: 109 ASVTLLGAGLLLSLLPAL 126
>gi|116812565 zinc finger protein, subfamily 1A, 5 [Homo sapiens]
Length = 419
Score = 28.5 bits (62), Expect = 1.6
Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 23 RCYNCGGSPSSSCKEAVTTCGEGRPQPGLEQIKLPGNPPVTLIHQHPACVAAHHCNQVET 82
R Y+ PSS +T G QP LP P L HHC +
Sbjct: 322 RNYSPVAGPSSEPSAHTSTPSIGNSQPSTPAPALPVQDPQLL----------HHCQHCDM 371
Query: 83 ESVGDVTYPAHRDCY 97
++ Y H C+
Sbjct: 372 YFADNILYTIHMGCH 386
>gi|122937436 tetratricopeptide repeat domain 39A isoform 2 [Homo
sapiens]
Length = 578
Score = 28.1 bits (61), Expect = 2.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 19 GNRMRCYNCGGSPSSSCKEAVTTC 42
G++ Y CGG+P SS EA+ C
Sbjct: 5 GHKDSLYPCGGTPESSLHEALDQC 28
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 28.1 bits (61), Expect = 2.2
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 28 GGSPSSSCKEAVTTCG-EGRPQPGLEQIKLPGNPPVTLIHQHPACVAAHHCNQ 79
G SPS + + + G G QPGL Q +P PP + Q A A NQ
Sbjct: 3301 GSSPSLAGSQQQLSLGLAGARQPGLPQPLMPTQPPAHALQQRLAPSMAMVSNQ 3353
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 28.1 bits (61), Expect = 2.2
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 18 LGNRMRCYNCGGS-PSSSCKEAVTTCGEGRPQPGLEQIKLPGNPPVTLIHQHPACVAAHH 76
LG R RC C G P + + TC G +Q G H+ P C H
Sbjct: 280 LGCRRRCGQCKGQQPCTVAEGRCLTCEPGWNGTKCDQPCATGFYGEGCSHRCPPCRDGHA 339
Query: 77 CNQV 80
CN V
Sbjct: 340 CNHV 343
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 28.1 bits (61), Expect = 2.2
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 18 LGNRMRCYNCGGS-PSSSCKEAVTTCGEGRPQPGLEQIKLPGNPPVTLIHQHPACVAAHH 76
LG R RC C G P + + TC G +Q G H+ P C H
Sbjct: 280 LGCRRRCGQCKGQQPCTVAEGRCLTCEPGWNGTKCDQPCATGFYGEGCSHRCPPCRDGHA 339
Query: 77 CNQV 80
CN V
Sbjct: 340 CNHV 343
>gi|31791002 keratin associated protein 13-3 [Homo sapiens]
Length = 172
Score = 28.1 bits (61), Expect = 2.2
Identities = 28/115 (24%), Positives = 38/115 (33%), Gaps = 19/115 (16%)
Query: 25 YNCGGSPSSSCKEAV------TTCGEGRPQPGLEQIKLPGNPPVTLIHQ-----HPACVA 73
YNC SSC ++CG P + L L C
Sbjct: 3 YNCCSRNFSSCSHGGYLHYPGSSCGSSYPSNLVYSTDLCSPSTCQLGSSLYRGCQETCWR 62
Query: 74 AHHCNQVETESVGDVTYPAHRDCYLGD---LCNSAVASHVAPAGILAAAATALTC 125
+ C + ES P H CY LCNS + HV G + + +L+C
Sbjct: 63 PNSCQTLCVESS-----PCHTSCYYPRTHMLCNSCLTMHVGSRGFGSNSCCSLSC 112
>gi|169171895 PREDICTED: similar to EF-hand calcium binding domain 3
[Homo sapiens]
Length = 146
Score = 27.7 bits (60), Expect = 2.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 20 NRMRCYNCGGSPSSSCKEAVTTCGEGRPQPGLE 52
NR +NC S SS E T G R Q GL+
Sbjct: 110 NRNSSHNCRSSSSSDTSECDTDSGRKRKQKGLK 142
>gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens]
Length = 3565
Score = 27.7 bits (60), Expect = 2.8
Identities = 18/61 (29%), Positives = 21/61 (34%)
Query: 73 AAHHCNQVETESVGDVTYPAHRDCYLGDLCNSAVASHVAPAGILAAAATALTCLLPGLWS 132
A HC GD PAH D ++ G + TCLL G WS
Sbjct: 2909 ALPHCTGNNPGFCGDPGTPAHGSRLGDDFKTKSLLRFSCEMGHQLRGSPERTCLLNGSWS 2968
Query: 133 G 133
G
Sbjct: 2969 G 2969
>gi|81295410 acid phosphatase-like 2 [Homo sapiens]
Length = 480
Score = 27.7 bits (60), Expect = 2.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 90 YPAHRDCYLGDLCNSAVASHVAPAGILAAAATALTCLLPGLWS 132
YP H C +G+L + V H+ +L LLP WS
Sbjct: 154 YPNHPLCEMGELTQTGVVQHLQNGQLLRDIYLKKHKLLPNDWS 196
>gi|22748649 acid phosphatase-like 2 [Homo sapiens]
Length = 480
Score = 27.7 bits (60), Expect = 2.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 90 YPAHRDCYLGDLCNSAVASHVAPAGILAAAATALTCLLPGLWS 132
YP H C +G+L + V H+ +L LLP WS
Sbjct: 154 YPNHPLCEMGELTQTGVVQHLQNGQLLRDIYLKKHKLLPNDWS 196
>gi|30181233 leucine-rich repeats and calponin homology (CH) domain
containing 4 [Homo sapiens]
Length = 683
Score = 27.7 bits (60), Expect = 2.8
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 15 GAALGNRMRCYNCGGSPSSSCKEAVTTCGEGRPQPG-LEQIKLPGNPPVT 63
GAA + +N GSP SS +A G+G P P Q LP P T
Sbjct: 444 GAAAVSTQAMHN--GSPKSSASQAGAAAGQGAPAPAPASQEPLPIAGPAT 491
>gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]
Length = 123
Score = 27.3 bits (59), Expect = 3.7
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
Query: 8 ILLSSLL-GAAL--GNRMRCYNCGGSPSSSCKEAVTTCGEGRPQPGLEQIKLPGNPPVTL 64
+LL+ L+ G AL G + CY+C S+ V C + Q +I+ G V
Sbjct: 4 VLLALLMAGLALQPGTALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRAVGLLTVIS 63
Query: 65 IHQHPACVAAHHCNQVETESVGDVTYPAHRDCYLGDLCNSAVASHVAPAGILAAAATALT 124
CV V +++ C DLCN++ A + PA + A AL
Sbjct: 64 KGCSLNCVDDSQDYYVGKKNI---------TCCDTDLCNASGAHALQPAAAILALLPALG 114
Query: 125 CLLPG 129
LL G
Sbjct: 115 LLLWG 119
>gi|7706083 complement component 1, r subcomponent-like precursor
[Homo sapiens]
Length = 487
Score = 27.3 bits (59), Expect = 3.7
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 106 VASHVAPAGILAAAATALTCLLPGLW 131
V +H AAAA ALTC PG W
Sbjct: 191 VQNHCQEPYYQAAAAGALTCATPGTW 216
>gi|62912479 major histocompatibility complex, class I, E precursor
[Homo sapiens]
Length = 358
Score = 27.3 bits (59), Expect = 3.7
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 44 EGRPQPGLEQIKLPGNPPVTLIHQHPACVAAHHCNQVETESVGDVTYPAHRDCYLGDLC 102
+GR G EQ G +TL + A Q+ + D + H+ YL D C
Sbjct: 127 DGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTC 185
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,396,312
Number of Sequences: 37866
Number of extensions: 317190
Number of successful extensions: 944
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 65
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.