Guide to the Human Genome
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Name: LOC100133744 Sequence: fasta or formatted (146aa) NCBI GI: 169171895
Description:

PREDICTED: similar to EF-hand calcium binding domain 3

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8          7           1
 C cysteine            2.7          4           1
 D aspartate           8.2         12           1
 E glutamate           3.4          5           1
 F phenylalanine       2.1          3           1
 G glycine             4.8          7           1
 H histidine           2.1          3           1
 I isoleucine          5.5          8           1
 K lysine              8.9         13           3
 L leucine             8.2         12           2
 M methionine          2.7          4           1
 N asparagine          6.2          9           2
 P proline             1.4          2           1
 Q glutamine           5.5          8           2
 R arginine            6.2          9           1
 S serine             11.0         16           5
 T threonine           7.5         11           2
 V valine              2.7          4           1
 W tryptophan          2.1          3           1
 Y tyrosine            4.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to EF-hand calcium binding domai... 
EFCAB3                0.935   EF-hand calcium binding domain 3 isoform a 
EFCAB3                0.935   EF-hand calcium binding domain 3 isoform b 
FAM133B               0.018   hypothetical protein LOC257415 isoform 2 
FAM133B               0.018   hypothetical protein LOC257415 isoform 1 
C2orf69               0.018   hypothetical protein LOC205327 
RBM6                  0.018   RNA binding motif protein 6 
DBF4B                 0.014   DBF4 homolog B isoform 1 
BRD4                  0.011   bromodomain-containing protein 4 isoform long 
PCIF1                 0.011   phosphorylated CTD interacting factor 1 
WWC2                  0.011   WW and C2 domain containing 2 
DNAH17                0.011   PREDICTED: dynein, axonemal, heavy chain 17 
DNAH17                0.011   PREDICTED: dynein, axonemal, heavy chain 17 
DNAH17                0.011   PREDICTED: dynein, axonemal, heavy chain 17 
LY6G6D                0.011   lymphocyte antigen 6 complex G6D 
RNF157                0.011   ring finger protein 157 
LOC652725             0.007   PREDICTED: similar to neuron navigator 3, partial [...
NAV3                  0.007   neuron navigator 3 
ARL6IP4               0.007   SRp25 nuclear protein isoform 4 
ARL6IP4               0.007   SRp25 nuclear protein isoform 2 
ZCCHC17               0.007   zinc finger, CCHC domain containing 17 
FAM133A               0.007   hypothetical protein LOC286499 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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