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Search of human proteins with 50400081
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo
sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens] 195 7e-51
gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a pre... 164 1e-41
gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens] 153 2e-38
gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b pre... 117 3e-27
gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3 ... 102 5e-23
gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo ... 102 5e-23
gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3 h... 100 3e-22
gi|239754793 PREDICTED: similar to Small ubiquitin-related modif... 98 1e-21
gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo ... 98 1e-21
gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo ... 98 1e-21
gi|239509111 PREDICTED: similar to Small ubiquitin-related modif... 98 1e-21
gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens] 90 4e-19
gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens] 90 4e-19
gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens] 90 4e-19
gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a pre... 79 6e-16
gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a prec... 79 6e-16
gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b pre... 70 4e-13
gi|46447823 nuclear factor of activated T-cells, cytoplasmic, ca... 53 6e-08
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 30 0.32
gi|110349721 titin isoform novex-3 [Homo sapiens] 29 0.93
gi|222136585 timeless homolog [Homo sapiens] 28 1.6
gi|148536855 coatomer protein complex, subunit alpha isoform 1 [... 28 1.6
gi|148536853 coatomer protein complex, subunit alpha isoform 2 [... 28 1.6
gi|118572606 hemicentin 1 [Homo sapiens] 27 3.5
gi|149363695 hypothetical protein LOC25943 [Homo sapiens] 27 4.6
>gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]
Length = 95
Score = 195 bits (495), Expect = 7e-51
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF
Sbjct: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
Query: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY 95
RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY
Sbjct: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY 95
>gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a
precursor [Homo sapiens]
Length = 95
Score = 164 bits (416), Expect = 1e-41
Identities = 81/95 (85%), Positives = 87/95 (91%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
MA+EKP E VKTENN+HINLKVAGQDGSVVQFKIKR TPLSKLMKAYCE +GLS++QIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY 95
RF GQPI+ TD PAQLEMEDEDTIDVFQQ TGGVY
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 95
>gi|48928058 small ubiquitin-like modifier protein 3 [Homo
sapiens]
Length = 103
Score = 153 bits (387), Expect = 2e-38
Identities = 78/94 (82%), Positives = 84/94 (89%), Gaps = 1/94 (1%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
M+ EKP E VKTEN+ HINLKVAGQDGSVVQFKIKR TPLSKLMKAYCE +GLS++QIRF
Sbjct: 1 MSEEKPKEGVKTEND-HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
Query: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGV 94
RF GQPI+ TD PAQLEMEDEDTIDVFQQ TGGV
Sbjct: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93
>gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b
precursor [Homo sapiens]
Length = 71
Score = 117 bits (292), Expect = 3e-27
Identities = 64/95 (67%), Positives = 66/95 (69%), Gaps = 24/95 (25%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
MA+EKP E VKTENN+HINLKVAGQDGSVVQFKIKR TPLSKLMKAYCE
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE----------- 49
Query: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY 95
QLEMEDEDTIDVFQQ TGGVY
Sbjct: 50 -------------RQLEMEDEDTIDVFQQQTGGVY 71
>gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3
homolog 2 [Homo sapiens]
Length = 206
Score = 102 bits (255), Expect = 5e-23
Identities = 55/95 (57%), Positives = 64/95 (67%), Gaps = 24/95 (25%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
+A+EKP E ++TEN +HINLKVAGQ+GSVVQF+IKR TPLSKLMKAY
Sbjct: 136 VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY------------- 182
Query: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY 95
PAQLEMEDEDT D+FQQ +GGVY
Sbjct: 183 -----------TPAQLEMEDEDTTDMFQQQSGGVY 206
>gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo
sapiens]
Length = 164
Score = 102 bits (255), Expect = 5e-23
Identities = 55/95 (57%), Positives = 64/95 (67%), Gaps = 24/95 (25%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
+A+EKP E ++TEN +HINLKVAGQ+GSVVQF+IKR TPLSKLMKAY
Sbjct: 94 VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY------------- 140
Query: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY 95
PAQLEMEDEDT D+FQQ +GGVY
Sbjct: 141 -----------TPAQLEMEDEDTTDMFQQQSGGVY 164
>gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3
homolog 2 [Homo sapiens]
Length = 70
Score = 100 bits (249), Expect = 3e-22
Identities = 58/95 (61%), Positives = 62/95 (65%), Gaps = 25/95 (26%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
MA++KP E VKT+NN HINLKV GQ GSVVQFKIKR TPLSKLMKAYCE
Sbjct: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCE----------- 48
Query: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY 95
QLEME+EDTIDVFQQ GGVY
Sbjct: 49 -------------LQLEMENEDTIDVFQQQMGGVY 70
>gi|239754793 PREDICTED: similar to Small ubiquitin-related
modifier 2 [Homo sapiens]
Length = 103
Score = 98.2 bits (243), Expect = 1e-21
Identities = 55/92 (59%), Positives = 58/92 (63%), Gaps = 24/92 (26%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
MAN+ E VKTENN+HINLKV GQD SVVQFKIKR TPLSKLM AYC+
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD----------- 49
Query: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTG 92
AQLEMEDE TIDVFQQ TG
Sbjct: 50 -------------AQLEMEDEGTIDVFQQQTG 68
>gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo
sapiens]
Length = 103
Score = 98.2 bits (243), Expect = 1e-21
Identities = 55/92 (59%), Positives = 58/92 (63%), Gaps = 24/92 (26%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
MAN+ E VKTENN+HINLKV GQD SVVQFKIKR TPLSKLM AYC+
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD----------- 49
Query: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTG 92
AQLEMEDE TIDVFQQ TG
Sbjct: 50 -------------AQLEMEDEGTIDVFQQQTG 68
>gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo
sapiens]
Length = 103
Score = 98.2 bits (243), Expect = 1e-21
Identities = 55/92 (59%), Positives = 58/92 (63%), Gaps = 24/92 (26%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
MAN+ E VKTENN+HINLKV GQD SVVQFKIKR TPLSKLM AYC+
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD----------- 49
Query: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTG 92
AQLEMEDE TIDVFQQ TG
Sbjct: 50 -------------AQLEMEDEGTIDVFQQQTG 68
>gi|239509111 PREDICTED: similar to Small ubiquitin-related
modifier 2 [Homo sapiens]
Length = 103
Score = 98.2 bits (243), Expect = 1e-21
Identities = 55/92 (59%), Positives = 58/92 (63%), Gaps = 24/92 (26%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
MAN+ E VKTENN+HINLKV GQD SVVQFKIKR TPLSKLM AYC+
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD----------- 49
Query: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTG 92
AQLEMEDE TIDVFQQ TG
Sbjct: 50 -------------AQLEMEDEGTIDVFQQQTG 68
>gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 89.7 bits (221), Expect = 4e-19
Identities = 43/49 (87%), Positives = 45/49 (91%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCE 49
MA+EKP E VKTENN+HINLKVAGQDGSV QFKIKR TPLSKLMKAYCE
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 89.7 bits (221), Expect = 4e-19
Identities = 43/49 (87%), Positives = 45/49 (91%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCE 49
MA+EKP E VKTENN+HINLKVAGQDGSV QFKIKR TPLSKLMKAYCE
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 89.7 bits (221), Expect = 4e-19
Identities = 43/49 (87%), Positives = 45/49 (91%)
Query: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCE 49
MA+EKP E VKTENN+HINLKVAGQDGSV QFKIKR TPLSKLMKAYCE
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
Length = 101
Score = 79.3 bits (194), Expect = 6e-16
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 13 ENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRFRFGGQPISGTDK 72
+ +I LKV GQD S + FK+K T L KL ++YC+ +G+ + +RF F GQ I+
Sbjct: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
Query: 73 PAQLEMEDEDTIDVFQQPTGG 93
P +L ME+ED I+V+Q+ TGG
Sbjct: 77 PKELGMEEEDVIEVYQEQTGG 97
>gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
Length = 101
Score = 79.3 bits (194), Expect = 6e-16
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 13 ENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRFRFGGQPISGTDK 72
+ +I LKV GQD S + FK+K T L KL ++YC+ +G+ + +RF F GQ I+
Sbjct: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
Query: 73 PAQLEMEDEDTIDVFQQPTGG 93
P +L ME+ED I+V+Q+ TGG
Sbjct: 77 PKELGMEEEDVIEVYQEQTGG 97
>gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b
precursor [Homo sapiens]
Length = 76
Score = 70.1 bits (170), Expect = 4e-13
Identities = 31/72 (43%), Positives = 48/72 (66%)
Query: 22 VAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRFRFGGQPISGTDKPAQLEMEDE 81
++ QD S + FK+K T L KL ++YC+ +G+ + +RF F GQ I+ P +L ME+E
Sbjct: 1 MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEE 60
Query: 82 DTIDVFQQPTGG 93
D I+V+Q+ TGG
Sbjct: 61 DVIEVYQEQTGG 72
>gi|46447823 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 2 interacting protein [Homo
sapiens]
Length = 419
Score = 52.8 bits (125), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 12 TENNNHINLKVAGQDG-SVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRFRFGGQPISGT 70
TE + + L+V G++ ++ + R +PL LM Y E GLS +++ F F G +SG
Sbjct: 342 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGR 401
Query: 71 DKPAQLEMEDEDTIDVF 87
+ PA L ME D I+V+
Sbjct: 402 ELPADLGMESGDLIEVW 418
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 29 VVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRFRFGGQPISGTDKPAQLEMEDEDTID 85
+V+ ++ PL ++ G+S +I FG +S T P L++ D ID
Sbjct: 275 LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIID 331
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/81 (22%), Positives = 38/81 (46%)
Query: 4 EKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRFRFG 63
E P+ ++H+ L++A + + + + + L+ + E +GL + R R
Sbjct: 242 EAPSRAPAEGPSHHLALQLANAKAQLRRLRQELEEKAELLLDSQAEVQGLEAEIRRLRQE 301
Query: 64 GQPISGTDKPAQLEMEDEDTI 84
Q +SG K A+L E+ + +
Sbjct: 302 AQALSGQAKRAELYREEAEAL 322
>gi|110349721 titin isoform novex-3 [Homo sapiens]
Length = 5604
Score = 28.9 bits (63), Expect = 0.93
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 38 TPLSKLMKAYCEPRGLSVKQIRFRFGGQPISGTDK--PAQLEMEDEDTIDVFQQPT 91
TP + ++ Y P G ++++ GG +GT K P+++E ED + F PT
Sbjct: 5097 TPPGETLERYSTPPGEALERYSIPTGGPNPTGTFKTYPSKIEREDGTPNEHFYTPT 5152
>gi|222136585 timeless homolog [Homo sapiens]
Length = 1208
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 5 KPTEEVKTENNNHINLKVAGQDGSVVQF-KIKRQTPLSKLMKAYCEPRGLSVKQIRFRFG 63
+P EE K + + KV G+ GS + K R L L+ A+ + GL+ + G
Sbjct: 1100 QPEEEQKLQPE--LQPKVPGEQGSDEEHCKEHRAQALRALLLAHKKKAGLASPEEEDAVG 1157
Query: 64 GQPISGTDKPAQLEMEDED 82
+P+ K QL DE+
Sbjct: 1158 KEPLKAAPKKRQLLDSDEE 1176
>gi|148536855 coatomer protein complex, subunit alpha isoform 1
[Homo sapiens]
Length = 1233
Score = 28.1 bits (61), Expect = 1.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 17 HINLKVAGQDGSVVQFKIKRQTP 39
++NL AG DG ++ FK++R+ P
Sbjct: 302 NLNLFAAGHDGGMIVFKLERERP 324
>gi|148536853 coatomer protein complex, subunit alpha isoform 2
[Homo sapiens]
Length = 1224
Score = 28.1 bits (61), Expect = 1.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 17 HINLKVAGQDGSVVQFKIKRQTP 39
++NL AG DG ++ FK++R+ P
Sbjct: 302 NLNLFAAGHDGGMIVFKLERERP 324
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 40 LSKLMKAYCEPRGLSVKQIRFRFGGQPISGTDKPAQLE 77
++ L+K CE RGL + I + GQPI + + ++
Sbjct: 1561 INSLIKLECETRGLPMPAITWYKDGQPIMSSSQALYID 1598
>gi|149363695 hypothetical protein LOC25943 [Homo sapiens]
Length = 1177
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 11 KTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRG 52
K ++N+ I+LKV +DG V+ K + + KL A +P G
Sbjct: 649 KQQDNSGISLKVIQEDGLSVEQK-RLHSSAQKLFSALSQPAG 689
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,825,431
Number of Sequences: 37866
Number of extensions: 150707
Number of successful extensions: 267
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 26
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.