Search of human proteins with 5032133

Search of human proteins with 5032133

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5032133 eukaryotic translation initiation factor 1 [Homo
sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5032133 eukaryotic translation initiation factor 1 [Homo sapi...   232   4e-62
gi|5031711 translation factor sui1 homolog [Homo sapiens]             219   3e-58
gi|239753006 PREDICTED: similar to eukaryotic translation initia...   208   6e-55
gi|239747538 PREDICTED: similar to eukaryotic translation initia...   208   6e-55
gi|239741414 PREDICTED: similar to eukaryotic translation initia...   208   6e-55
gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member...    27   2.7  
gi|7657176 canopy 2 homolog [Homo sapiens]                             27   3.5  
gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Hom...    27   4.6  
gi|65507403 SEC15-like 1 isoform a [Homo sapiens]                      26   6.0  
gi|62243652 SEC15-like 1 isoform b [Homo sapiens]                      26   6.0  
gi|38327518 BTB and kelch domain containing 3 [Homo sapiens]           26   7.8  
gi|38327516 BTB and kelch domain containing 3 [Homo sapiens]           26   7.8  
gi|8923758 carbohydrate sulfotransferase 11 [Homo sapiens]             26   7.8  
gi|41393593 aarF domain containing kinase 5 [Homo sapiens]             26   7.8  

>gi|5032133 eukaryotic translation initiation factor 1 [Homo
           sapiens]
          Length = 113

 Score =  232 bits (592), Expect = 4e-62
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV 60
           MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV
Sbjct: 1   MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV 60

Query: 61  KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
           KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF
Sbjct: 61  KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113


>gi|5031711 translation factor sui1 homolog [Homo sapiens]
          Length = 113

 Score =  219 bits (559), Expect = 3e-58
 Identities = 104/113 (92%), Positives = 110/113 (97%)

Query: 1   MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV 60
           MS IQNL SFDPFADA+KGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV
Sbjct: 1   MSTIQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV 60

Query: 61  KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
           KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL+E+G+ K++QLKVHGF
Sbjct: 61  KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113


>gi|239753006 PREDICTED: similar to eukaryotic translation
           initiation factor 1 [Homo sapiens]
          Length = 136

 Score =  208 bits (530), Expect = 6e-55
 Identities = 104/111 (93%), Positives = 105/111 (94%), Gaps = 1/111 (0%)

Query: 3   AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 62
           AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA
Sbjct: 27  AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 86

Query: 63  FKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
           F K FACNGTVIEHPEYGEVIQ QGDQ  NICQFLVE+GLAKDDQLKVH F
Sbjct: 87  F-KNFACNGTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVHVF 136


>gi|239747538 PREDICTED: similar to eukaryotic translation
           initiation factor 1 [Homo sapiens]
          Length = 136

 Score =  208 bits (530), Expect = 6e-55
 Identities = 104/111 (93%), Positives = 105/111 (94%), Gaps = 1/111 (0%)

Query: 3   AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 62
           AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA
Sbjct: 27  AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 86

Query: 63  FKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
           F K FACNGTVIEHPEYGEVIQ QGDQ  NICQFLVE+GLAKDDQLKVH F
Sbjct: 87  F-KNFACNGTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVHVF 136


>gi|239741414 PREDICTED: similar to eukaryotic translation
           initiation factor 1 [Homo sapiens]
          Length = 136

 Score =  208 bits (530), Expect = 6e-55
 Identities = 104/111 (93%), Positives = 105/111 (94%), Gaps = 1/111 (0%)

Query: 3   AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 62
           AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA
Sbjct: 27  AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 86

Query: 63  FKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
           F K FACNGTVIEHPEYGEVIQ QGDQ  NICQFLVE+GLAKDDQLKVH F
Sbjct: 87  F-KNFACNGTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVHVF 136


>gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member 2
           [Homo sapiens]
          Length = 1545

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 70  NGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVH 111
           NGT++E   Y  ++  +G+  KN+  FL   G   +++  VH
Sbjct: 836 NGTIVEKGSYSALLAKKGEFAKNLKTFLRHTG--PEEEATVH 875


>gi|7657176 canopy 2 homolog [Homo sapiens]
          Length = 182

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 32  HIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRK 91
           ++R+  RNG  +   +QGI  D D    +     KFAC   V E+ +  E+I+    +  
Sbjct: 105 YVRVVGRNGESSELDLQGIRIDSDISGTL-----KFACESIVEEYED--ELIEFFSREAD 157

Query: 92  NI 93
           N+
Sbjct: 158 NV 159


>gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Homo
           sapiens]
          Length = 1249

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 26  GTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69
           G   Y +  + + + + TL T QG+   +D ++LV   KK  AC
Sbjct: 307 GKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKAC 350


>gi|65507403 SEC15-like 1 isoform a [Homo sapiens]
          Length = 804

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 27  TEDYIHIRIQQRNGRKTLTTVQ---GIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVI 83
           TED I  RIQQRN    +  +Q    + + Y K K   + K+ ++   T+    E  E +
Sbjct: 112 TEDIIRCRIQQRNITTVVEKLQLCLPVLEMYSKLKEQMSAKRYYSALKTM----EQLENV 167

Query: 84  QLQGDQRKNICQFLVE 99
                 +   CQ ++E
Sbjct: 168 YFPWVSQYRFCQLMIE 183


>gi|62243652 SEC15-like 1 isoform b [Homo sapiens]
          Length = 799

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 27  TEDYIHIRIQQRNGRKTLTTVQ---GIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVI 83
           TED I  RIQQRN    +  +Q    + + Y K K   + K+ ++   T+    E  E +
Sbjct: 107 TEDIIRCRIQQRNITTVVEKLQLCLPVLEMYSKLKEQMSAKRYYSALKTM----EQLENV 162

Query: 84  QLQGDQRKNICQFLVE 99
                 +   CQ ++E
Sbjct: 163 YFPWVSQYRFCQLMIE 178


>gi|38327518 BTB and kelch domain containing 3 [Homo sapiens]
          Length = 612

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 23/107 (21%)

Query: 2   SAIQNLHSFDPFADASKG--------DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADD 53
           S +++ + FD   DA K          D  P+ TE YI I   + NG    T    I  D
Sbjct: 260 SLLKSTNCFDIIMDAIKCVQGSGGLFPDARPSTTEKYIFIHKTEENGENQYTFCYNIKSD 319

Query: 54  YDKKKLVKAFKKKFACNGTVIEHP-----EYGEVIQLQGDQRKNICQ 95
                       K      +I+ P      YGE I L G  +   C+
Sbjct: 320 ----------SWKILPQSHLIDLPGSSLSSYGEKIFLTGGCKGKCCR 356


>gi|38327516 BTB and kelch domain containing 3 [Homo sapiens]
          Length = 612

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 23/107 (21%)

Query: 2   SAIQNLHSFDPFADASKG--------DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADD 53
           S +++ + FD   DA K          D  P+ TE YI I   + NG    T    I  D
Sbjct: 260 SLLKSTNCFDIIMDAIKCVQGSGGLFPDARPSTTEKYIFIHKTEENGENQYTFCYNIKSD 319

Query: 54  YDKKKLVKAFKKKFACNGTVIEHP-----EYGEVIQLQGDQRKNICQ 95
                       K      +I+ P      YGE I L G  +   C+
Sbjct: 320 ----------SWKILPQSHLIDLPGSSLSSYGEKIFLTGGCKGKCCR 356


>gi|8923758 carbohydrate sulfotransferase 11 [Homo sapiens]
          Length = 352

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 57  KKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
           ++LV A++ KF     +  H  YG  I  +  QRKN  Q      L K D +K   F
Sbjct: 190 ERLVSAYRNKFTQKYNISFHKRYGTKIIKR--QRKNATQ----EALRKGDDVKFEEF 240


>gi|41393593 aarF domain containing kinase 5 [Homo sapiens]
          Length = 580

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 48  QGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRK 91
           QG+A     +KL+KAF ++    G +   P  G V+  +G   K
Sbjct: 332 QGLAVHDIAEKLIKAFAEQIFYTGFIHSDPHPGNVLVRKGPDGK 375


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,086,381
Number of Sequences: 37866
Number of extensions: 156424
Number of successful extensions: 298
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 14
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.