BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|5032133 eukaryotic translation initiation factor 1 [Homo sapiens] (113 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|5032133 eukaryotic translation initiation factor 1 [Homo sapi... 232 4e-62 gi|5031711 translation factor sui1 homolog [Homo sapiens] 219 3e-58 gi|239753006 PREDICTED: similar to eukaryotic translation initia... 208 6e-55 gi|239747538 PREDICTED: similar to eukaryotic translation initia... 208 6e-55 gi|239741414 PREDICTED: similar to eukaryotic translation initia... 208 6e-55 gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member... 27 2.7 gi|7657176 canopy 2 homolog [Homo sapiens] 27 3.5 gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Hom... 27 4.6 gi|65507403 SEC15-like 1 isoform a [Homo sapiens] 26 6.0 gi|62243652 SEC15-like 1 isoform b [Homo sapiens] 26 6.0 gi|38327518 BTB and kelch domain containing 3 [Homo sapiens] 26 7.8 gi|38327516 BTB and kelch domain containing 3 [Homo sapiens] 26 7.8 gi|8923758 carbohydrate sulfotransferase 11 [Homo sapiens] 26 7.8 gi|41393593 aarF domain containing kinase 5 [Homo sapiens] 26 7.8 >gi|5032133 eukaryotic translation initiation factor 1 [Homo sapiens] Length = 113 Score = 232 bits (592), Expect = 4e-62 Identities = 113/113 (100%), Positives = 113/113 (100%) Query: 1 MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV 60 MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV Sbjct: 1 MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV 60 Query: 61 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF Sbjct: 61 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113 >gi|5031711 translation factor sui1 homolog [Homo sapiens] Length = 113 Score = 219 bits (559), Expect = 3e-58 Identities = 104/113 (92%), Positives = 110/113 (97%) Query: 1 MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV 60 MS IQNL SFDPFADA+KGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV Sbjct: 1 MSTIQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV 60 Query: 61 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL+E+G+ K++QLKVHGF Sbjct: 61 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113 >gi|239753006 PREDICTED: similar to eukaryotic translation initiation factor 1 [Homo sapiens] Length = 136 Score = 208 bits (530), Expect = 6e-55 Identities = 104/111 (93%), Positives = 105/111 (94%), Gaps = 1/111 (0%) Query: 3 AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 62 AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA Sbjct: 27 AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 86 Query: 63 FKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113 F K FACNGTVIEHPEYGEVIQ QGDQ NICQFLVE+GLAKDDQLKVH F Sbjct: 87 F-KNFACNGTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVHVF 136 >gi|239747538 PREDICTED: similar to eukaryotic translation initiation factor 1 [Homo sapiens] Length = 136 Score = 208 bits (530), Expect = 6e-55 Identities = 104/111 (93%), Positives = 105/111 (94%), Gaps = 1/111 (0%) Query: 3 AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 62 AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA Sbjct: 27 AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 86 Query: 63 FKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113 F K FACNGTVIEHPEYGEVIQ QGDQ NICQFLVE+GLAKDDQLKVH F Sbjct: 87 F-KNFACNGTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVHVF 136 >gi|239741414 PREDICTED: similar to eukaryotic translation initiation factor 1 [Homo sapiens] Length = 136 Score = 208 bits (530), Expect = 6e-55 Identities = 104/111 (93%), Positives = 105/111 (94%), Gaps = 1/111 (0%) Query: 3 AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 62 AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA Sbjct: 27 AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 86 Query: 63 FKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113 F K FACNGTVIEHPEYGEVIQ QGDQ NICQFLVE+GLAKDDQLKVH F Sbjct: 87 F-KNFACNGTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVHVF 136 >gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member 2 [Homo sapiens] Length = 1545 Score = 27.3 bits (59), Expect = 2.7 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Query: 70 NGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVH 111 NGT++E Y ++ +G+ KN+ FL G +++ VH Sbjct: 836 NGTIVEKGSYSALLAKKGEFAKNLKTFLRHTG--PEEEATVH 875 >gi|7657176 canopy 2 homolog [Homo sapiens] Length = 182 Score = 26.9 bits (58), Expect = 3.5 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%) Query: 32 HIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRK 91 ++R+ RNG + +QGI D D + KFAC V E+ + E+I+ + Sbjct: 105 YVRVVGRNGESSELDLQGIRIDSDISGTL-----KFACESIVEEYED--ELIEFFSREAD 157 Query: 92 NI 93 N+ Sbjct: 158 NV 159 >gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Homo sapiens] Length = 1249 Score = 26.6 bits (57), Expect = 4.6 Identities = 14/44 (31%), Positives = 23/44 (52%) Query: 26 GTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69 G Y + + + + + TL T QG+ +D ++LV KK AC Sbjct: 307 GKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKAC 350 >gi|65507403 SEC15-like 1 isoform a [Homo sapiens] Length = 804 Score = 26.2 bits (56), Expect = 6.0 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 27 TEDYIHIRIQQRNGRKTLTTVQ---GIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVI 83 TED I RIQQRN + +Q + + Y K K + K+ ++ T+ E E + Sbjct: 112 TEDIIRCRIQQRNITTVVEKLQLCLPVLEMYSKLKEQMSAKRYYSALKTM----EQLENV 167 Query: 84 QLQGDQRKNICQFLVE 99 + CQ ++E Sbjct: 168 YFPWVSQYRFCQLMIE 183 >gi|62243652 SEC15-like 1 isoform b [Homo sapiens] Length = 799 Score = 26.2 bits (56), Expect = 6.0 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 27 TEDYIHIRIQQRNGRKTLTTVQ---GIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVI 83 TED I RIQQRN + +Q + + Y K K + K+ ++ T+ E E + Sbjct: 107 TEDIIRCRIQQRNITTVVEKLQLCLPVLEMYSKLKEQMSAKRYYSALKTM----EQLENV 162 Query: 84 QLQGDQRKNICQFLVE 99 + CQ ++E Sbjct: 163 YFPWVSQYRFCQLMIE 178 >gi|38327518 BTB and kelch domain containing 3 [Homo sapiens] Length = 612 Score = 25.8 bits (55), Expect = 7.8 Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 23/107 (21%) Query: 2 SAIQNLHSFDPFADASKG--------DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADD 53 S +++ + FD DA K D P+ TE YI I + NG T I D Sbjct: 260 SLLKSTNCFDIIMDAIKCVQGSGGLFPDARPSTTEKYIFIHKTEENGENQYTFCYNIKSD 319 Query: 54 YDKKKLVKAFKKKFACNGTVIEHP-----EYGEVIQLQGDQRKNICQ 95 K +I+ P YGE I L G + C+ Sbjct: 320 ----------SWKILPQSHLIDLPGSSLSSYGEKIFLTGGCKGKCCR 356 >gi|38327516 BTB and kelch domain containing 3 [Homo sapiens] Length = 612 Score = 25.8 bits (55), Expect = 7.8 Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 23/107 (21%) Query: 2 SAIQNLHSFDPFADASKG--------DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADD 53 S +++ + FD DA K D P+ TE YI I + NG T I D Sbjct: 260 SLLKSTNCFDIIMDAIKCVQGSGGLFPDARPSTTEKYIFIHKTEENGENQYTFCYNIKSD 319 Query: 54 YDKKKLVKAFKKKFACNGTVIEHP-----EYGEVIQLQGDQRKNICQ 95 K +I+ P YGE I L G + C+ Sbjct: 320 ----------SWKILPQSHLIDLPGSSLSSYGEKIFLTGGCKGKCCR 356 >gi|8923758 carbohydrate sulfotransferase 11 [Homo sapiens] Length = 352 Score = 25.8 bits (55), Expect = 7.8 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 57 KKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113 ++LV A++ KF + H YG I + QRKN Q L K D +K F Sbjct: 190 ERLVSAYRNKFTQKYNISFHKRYGTKIIKR--QRKNATQ----EALRKGDDVKFEEF 240 >gi|41393593 aarF domain containing kinase 5 [Homo sapiens] Length = 580 Score = 25.8 bits (55), Expect = 7.8 Identities = 14/44 (31%), Positives = 22/44 (50%) Query: 48 QGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRK 91 QG+A +KL+KAF ++ G + P G V+ +G K Sbjct: 332 QGLAVHDIAEKLIKAFAEQIFYTGFIHSDPHPGNVLVRKGPDGK 375 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.320 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,086,381 Number of Sequences: 37866 Number of extensions: 156424 Number of successful extensions: 298 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 287 Number of HSP's gapped (non-prelim): 14 length of query: 113 length of database: 18,247,518 effective HSP length: 83 effective length of query: 30 effective length of database: 15,104,640 effective search space: 453139200 effective search space used: 453139200 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.