Guide to the Human Genome
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Name: GPM6B Sequence: fasta or formatted (328aa) NCBI GI: 50263048
Description:

glycoprotein M6B isoform 1

Referenced in:

Oligodendrocytes and Myelin

Other entries for this name:
alt prot [265aa] glycoprotein M6B isoform 3
alt prot [305aa] glycoprotein M6B isoform 2
alt prot [246aa] glycoprotein M6B isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         30           2
 C cysteine            4.3         14           2
 D aspartate           1.8          6           1
 E glutamate           6.4         21           2
 F phenylalanine       5.8         19           3
 G glycine             7.9         26           2
 H histidine           2.7          9           1
 I isoleucine          7.3         24           2
 K lysine              4.0         13           1
 L leucine             7.9         26           2
 M methionine          3.0         10           1
 N asparagine          3.7         12           1
 P proline             3.4         11           1
 Q glutamine           4.6         15           1
 R arginine            2.1          7           1
 S serine              7.6         25           2
 T threonine           5.5         18           2
 V valine              6.4         21           1
 W tryptophan          1.5          5           1
 Y tyrosine            4.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycoprotein M6B isoform 1 
GPM6B                 0.871   glycoprotein M6B isoform 2 
GPM6B                 0.707   glycoprotein M6B isoform 3 
GPM6B                 0.679   glycoprotein M6B isoform 4 
GPM6A                 0.445   glycoprotein M6A isoform 3 
GPM6A                 0.445   glycoprotein M6A isoform 2 
GPM6A                 0.445   glycoprotein M6A isoform 1 
PLP1                  0.393   proteolipid protein 1 isoform 2 
PLP1                  0.366   proteolipid protein 1 isoform 1 
PLP1                  0.366   proteolipid protein 1 isoform 1 
OR5A1                 0.012   olfactory receptor, family 5, subfamily A, member 1 ...
OR2C1                 0.008   olfactory receptor, family 2, subfamily C, member 1...
JUB                   0.008   ajuba isoform 2 
JUB                   0.008   ajuba isoform 1 
SCN7A                 0.006   sodium channel, voltage-gated, type VII, alpha [Hom...
FGFR2                 0.006   fibroblast growth factor receptor 2 isoform 4 precu...
SLC7A11               0.006   solute carrier family 7, (cationic amino acid transpo...
LIMD1                 0.006   LIM domains containing 1 
EPHB1                 0.005   ephrin receptor EphB1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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