Search of human proteins with 4885561

Search of human proteins with 4885561

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4885561 AMP-activated protein kinase beta 2 non-catalytic
subunit [Homo sapiens]
         (272 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4885561 AMP-activated protein kinase beta 2 non-catalytic sub...   559   e-159
gi|19923359 AMP-activated protein kinase beta 1 non-catalytic su...   391   e-109
gi|18201896 T-box 5 isoform 2 [Homo sapiens]                           35   0.053
gi|18201892 T-box 5 isoform 1 [Homo sapiens]                           35   0.053
gi|31652232 T-box 5 isoform 1 [Homo sapiens]                           35   0.053
gi|71725360 zinc finger protein 609 [Homo sapiens]                     32   0.45 
gi|18201894 T-box 5 isoform 3 [Homo sapiens]                           31   1.0  
gi|217330559 unc-51-like kinase 2 [Homo sapiens]                       30   2.2  
gi|217330557 unc-51-like kinase 2 [Homo sapiens]                       30   2.2  
gi|18129690 T-box 4 [Homo sapiens]                                     30   2.9  
gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]                    30   2.9  
gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]                    30   2.9  
gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]                    30   2.9  
gi|197313748 SET domain containing 2 [Homo sapiens]                    30   2.9  
gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens]       29   3.8  
gi|116008192 myosin light chain kinase isoform 1 [Homo sapiens]        29   3.8  
gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens]       29   3.8  
gi|116008188 myosin light chain kinase isoform 2 [Homo sapiens]        29   3.8  
gi|115298663 SCL/TAL1 interrupting locus isoform 1 [Homo sapiens]      29   3.8  
gi|115298661 SCL/TAL1 interrupting locus isoform 2 [Homo sapiens]      29   3.8  
gi|116089333 kelch domain containing 7A [Homo sapiens]                 29   3.8  
gi|19743879 regulatory factor X2 isoform b [Homo sapiens]              29   3.8  
gi|19743881 regulatory factor X2 isoform a [Homo sapiens]              29   3.8  
gi|90903231 huntingtin [Homo sapiens]                                  29   5.0  
gi|119120894 Dmx-like 2 [Homo sapiens]                                 29   5.0  
gi|156630992 OTU domain containing 4 protein isoform 3 [Homo sap...    28   6.5  
gi|40807496 OTU domain containing 4 protein isoform 1 [Homo sapi...    28   6.5  

>gi|4885561 AMP-activated protein kinase beta 2 non-catalytic
           subunit [Homo sapiens]
          Length = 272

 Score =  559 bits (1440), Expect = e-159
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV 60
           MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
Sbjct: 1   MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV 60

Query: 61  SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE 120
           SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
Sbjct: 61  SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE 120

Query: 121 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD 180
           GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD
Sbjct: 121 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD 180

Query: 181 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH 240
           LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH
Sbjct: 181 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH 240

Query: 241 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI 272
           LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
Sbjct: 241 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI 272


>gi|19923359 AMP-activated protein kinase beta 1 non-catalytic
           subunit [Homo sapiens]
          Length = 270

 Score =  391 bits (1005), Expect = e-109
 Identities = 192/273 (70%), Positives = 223/273 (81%), Gaps = 4/273 (1%)

Query: 1   MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF 59
           MGNT+S+R + ERHG  K  R + +GG   G   KI++ S +D  +F   + K P  +EF
Sbjct: 1   MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF 60

Query: 60  VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP 119
           ++WQ DLE + K   QARPTV RW+ GGKEV++SGSFNNWS K+PL +SHN+FVAILDLP
Sbjct: 61  LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP 119

Query: 120 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR 179
           EGEHQYKFFVDGQW HDPSEP+VTSQLGT+NN+I VKK+DFEVFDAL +DS + S+ S  
Sbjct: 120 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS-- 177

Query: 180 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 239
           +LSSSPPGPY QE Y  + EERF++PPILPPHLLQVILNKDT ISCDPALLPEPNHVMLN
Sbjct: 178 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237

Query: 240 HLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI 272
           HLYALSIKD VMVLSATHRYKKKYVTTLLYKPI
Sbjct: 238 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270


>gi|18201896 T-box 5 isoform 2 [Homo sapiens]
          Length = 349

 Score = 35.4 bits (80), Expect = 0.053
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 51  SKLPGDKEFVSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGS----FNNWSTKIPLI 106
           SK P   +    QQ +E  +K     R   +++ E G E+ I+ +    F ++  K+  +
Sbjct: 36  SKSPSSPQAAFTQQGME-GIKVFLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGL 94

Query: 107 KSHNDFVAILDL-PEGEHQYKFFVDGQW-VHDPSEPVVTSQL 146
                ++ ++D+ P  +H+YK F D +W V   +EP +  +L
Sbjct: 95  NPKTKYILLMDIVPADDHRYK-FADNKWSVTGKAEPAMPGRL 135


>gi|18201892 T-box 5 isoform 1 [Homo sapiens]
          Length = 518

 Score = 35.4 bits (80), Expect = 0.053
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 51  SKLPGDKEFVSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGS----FNNWSTKIPLI 106
           SK P   +    QQ +E  +K     R   +++ E G E+ I+ +    F ++  K+  +
Sbjct: 36  SKSPSSPQAAFTQQGME-GIKVFLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGL 94

Query: 107 KSHNDFVAILDL-PEGEHQYKFFVDGQW-VHDPSEPVVTSQL 146
                ++ ++D+ P  +H+YK F D +W V   +EP +  +L
Sbjct: 95  NPKTKYILLMDIVPADDHRYK-FADNKWSVTGKAEPAMPGRL 135


>gi|31652232 T-box 5 isoform 1 [Homo sapiens]
          Length = 518

 Score = 35.4 bits (80), Expect = 0.053
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 51  SKLPGDKEFVSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGS----FNNWSTKIPLI 106
           SK P   +    QQ +E  +K     R   +++ E G E+ I+ +    F ++  K+  +
Sbjct: 36  SKSPSSPQAAFTQQGME-GIKVFLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGL 94

Query: 107 KSHNDFVAILDL-PEGEHQYKFFVDGQW-VHDPSEPVVTSQL 146
                ++ ++D+ P  +H+YK F D +W V   +EP +  +L
Sbjct: 95  NPKTKYILLMDIVPADDHRYK-FADNKWSVTGKAEPAMPGRL 135


>gi|71725360 zinc finger protein 609 [Homo sapiens]
          Length = 1411

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 34/121 (28%)

Query: 172 ESSETSCRDLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNI-------- 223
           E  E  CR L         +++ + + E    +P +LP HLL  ++N D +         
Sbjct: 233 EEGENECRLL---------KKVKSEKMESPVSTPAVLPIHLLVPVVNNDISSPCEQIMVR 283

Query: 224 -------SCDPALLPEP---------NHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTL 267
                  +CD AL  EP           V L  +     +D ++V++ T R  K YV TL
Sbjct: 284 TRSVGVNTCDVALATEPECLGPCEPGTSVNLEGIVWQETEDGMLVVNVTWR-NKTYVGTL 342

Query: 268 L 268
           L
Sbjct: 343 L 343


>gi|18201894 T-box 5 isoform 3 [Homo sapiens]
          Length = 468

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 68  DSVKPTQQARPTVIRWSEGGKEVFISGS----FNNWSTKIPLIKSHNDFVAILDL-PEGE 122
           + +K     R   +++ E G E+ I+ +    F ++  K+  +     ++ ++D+ P  +
Sbjct: 2   EGIKVFLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADD 61

Query: 123 HQYKFFVDGQW-VHDPSEPVVTSQL 146
           H+YK F D +W V   +EP +  +L
Sbjct: 62  HRYK-FADNKWSVTGKAEPAMPGRL 85


>gi|217330559 unc-51-like kinase 2 [Homo sapiens]
          Length = 1036

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 13/59 (22%)

Query: 174 SETSCRDLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDT------NISCD 226
           S  SCR  +S P  P  Q +     EE   SPP+ PP+ LQV  +KD+      N SCD
Sbjct: 298 SSPSCR-FASPPSLPDMQHI----QEENLSSPPLGPPNYLQV--SKDSASTSSKNSSCD 349


>gi|217330557 unc-51-like kinase 2 [Homo sapiens]
          Length = 1036

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 13/59 (22%)

Query: 174 SETSCRDLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDT------NISCD 226
           S  SCR  +S P  P  Q +     EE   SPP+ PP+ LQV  +KD+      N SCD
Sbjct: 298 SSPSCR-FASPPSLPDMQHI----QEENLSSPPLGPPNYLQV--SKDSASTSSKNSSCD 349


>gi|18129690 T-box 4 [Homo sapiens]
          Length = 545

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 7/71 (9%)

Query: 82  RWSEGGKEVFISGS----FNNWSTKIPLIKSHNDFVAILDL-PEGEHQYKFFVDGQW-VH 135
           ++ E G E+ I+ +    F ++  K+  +     ++ ++D+ P  +H+YK F D +W V 
Sbjct: 79  KFHEAGTEMIITKAGRRMFPSYKVKVTGMNPKTKYILLIDIVPADDHRYK-FCDNKWMVA 137

Query: 136 DPSEPVVTSQL 146
             +EP +  +L
Sbjct: 138 GKAEPAMPGRL 148


>gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]
          Length = 3874

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 192  EMYAFRSEERFKSPPILPPHL-------LQVILNKDTNISCDPALLPEPNHVMLNHLYAL 244
            E  A  +E+ F     +PP +       +  ILN   ++ CD    P P         AL
Sbjct: 1728 ENQAGSAEKLFTLRVQVPPRIAGLDLEQVTAILNSSVSLPCDVHAHPNPEVTWYKDSQAL 1787

Query: 245  SIKDSVMVLSATH 257
            S+ + V +L  TH
Sbjct: 1788 SLGEEVFLLPGTH 1800


>gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]
          Length = 5065

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 192  EMYAFRSEERFKSPPILPPHL-------LQVILNKDTNISCDPALLPEPNHVMLNHLYAL 244
            E  A  +E+ F     +PP +       +  ILN   ++ CD    P P         AL
Sbjct: 2919 ENQAGSAEKLFTLRVQVPPRIAGLDLEQVTAILNSSVSLPCDVHAHPNPEVTWYKDSQAL 2978

Query: 245  SIKDSVMVLSATH 257
            S+ + V +L  TH
Sbjct: 2979 SLGEEVFLLPGTH 2991


>gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]
          Length = 3783

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 192  EMYAFRSEERFKSPPILPPHL-------LQVILNKDTNISCDPALLPEPNHVMLNHLYAL 244
            E  A  +E+ F     +PP +       +  ILN   ++ CD    P P         AL
Sbjct: 1637 ENQAGSAEKLFTLRVQVPPRIAGLDLEQVTAILNSSVSLPCDVHAHPNPEVTWYKDSQAL 1696

Query: 245  SIKDSVMVLSATH 257
            S+ + V +L  TH
Sbjct: 1697 SLGEEVFLLPGTH 1709


>gi|197313748 SET domain containing 2 [Homo sapiens]
          Length = 2564

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 162  VFDALKLDSMESSETSCRDLSSSPPGPYGQE------MYAFRSEERFKSPPILPPHLLQV 215
            +F  LK+ S  S +++  D +S   G  G+E            EE  +S  +LP  L + 
Sbjct: 1877 MFRRLKIISENSMDSAISDATSELEGKDGKEDLDQLENVPVEEEEELQSQQLLPQQLPEC 1936

Query: 216  ILNKDTNISCDPALLPEP 233
             ++ +TNI        EP
Sbjct: 1937 KVDSETNIEASKLPTSEP 1954


>gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens]
          Length = 1863

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 122  EHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFD 164
            +H+YKF V    V+  SEP   S+L T+       K + EV D
Sbjct: 1397 DHEYKFRVRAINVYGTSEPSQESELTTVGEKPEEPKDEVEVSD 1439


>gi|116008192 myosin light chain kinase isoform 1 [Homo sapiens]
          Length = 1914

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 122  EHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFD 164
            +H+YKF V    V+  SEP   S+L T+       K + EV D
Sbjct: 1397 DHEYKFRVRAINVYGTSEPSQESELTTVGEKPEEPKDEVEVSD 1439


>gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens]
          Length = 1794

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 122  EHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFD 164
            +H+YKF V    V+  SEP   S+L T+       K + EV D
Sbjct: 1328 DHEYKFRVRAINVYGTSEPSQESELTTVGEKPEEPKDEVEVSD 1370


>gi|116008188 myosin light chain kinase isoform 2 [Homo sapiens]
          Length = 1845

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 122  EHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFD 164
            +H+YKF V    V+  SEP   S+L T+       K + EV D
Sbjct: 1328 DHEYKFRVRAINVYGTSEPSQESELTTVGEKPEEPKDEVEVSD 1370


>gi|115298663 SCL/TAL1 interrupting locus isoform 1 [Homo sapiens]
          Length = 1288

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 128 FVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRDLSSSPPG 187
           F++   +  P E V       IN+L H+K    +++D      +E+ E S R +    P 
Sbjct: 435 FIESNPLPTPLEMVNNENPPLINHLEHLKPLQPQLYDEKHSPEVEAGEPSLRGI----PN 490

Query: 188 PYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALS 245
              Q+  A     + + PP           N  T  S  P+    P+H +   L  +S
Sbjct: 491 QLNQDKPALLRHCKVRQPPAYKKG------NPHTRNSIKPSSHNGPSHDIFEKLQTVS 542


>gi|115298661 SCL/TAL1 interrupting locus isoform 2 [Homo sapiens]
          Length = 1287

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 128 FVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRDLSSSPPG 187
           F++   +  P E V       IN+L H+K    +++D      +E+ E S R +    P 
Sbjct: 435 FIESNPLPTPLEMVNNENPPLINHLEHLKPLQPQLYDEKHSPEVEAGEPSLRGI----PN 490

Query: 188 PYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALS 245
              Q+  A     + + PP           N  T  S  P+    P+H +   L  +S
Sbjct: 491 QLNQDKPALLRHCKVRQPPAYKKG------NPHTRNSIKPSSHNGPSHDIFEKLQTVS 542


>gi|116089333 kelch domain containing 7A [Homo sapiens]
          Length = 777

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 2   GNTTSDRV-----SGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVF 46
           G T++DR      SGE  G + + SE      P +E +  VGS  DP  F
Sbjct: 109 GATSTDRKPQRKGSGEERGGQGSDSEQVPPCCPSQETRTAVGSNPDPPHF 158


>gi|19743879 regulatory factor X2 isoform b [Homo sapiens]
          Length = 698

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 18  AARSEGAGGHAPGKEHKIMV-GSTDDPSVFSLPDSKLPGDKEFVSWQQDLEDSVKPTQQA 76
           A R   A    P    +++V  ++ +P    +    LP         Q +   V+P Q  
Sbjct: 15  ALRPSAAAPPVPASPQRVLVQAASSNPKGAQMQPISLPR-------VQQVPQQVQPVQHV 67

Query: 77  RPTVIRWSEGGKEVFISGSFNNWSTKIP 104
            P  +++ EGG  V+ +G+     T  P
Sbjct: 68  YPAQVQYVEGGDAVYTNGAIRTAYTYNP 95


>gi|19743881 regulatory factor X2 isoform a [Homo sapiens]
          Length = 723

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 18  AARSEGAGGHAPGKEHKIMV-GSTDDPSVFSLPDSKLPGDKEFVSWQQDLEDSVKPTQQA 76
           A R   A    P    +++V  ++ +P    +    LP         Q +   V+P Q  
Sbjct: 15  ALRPSAAAPPVPASPQRVLVQAASSNPKGAQMQPISLPR-------VQQVPQQVQPVQHV 67

Query: 77  RPTVIRWSEGGKEVFISGSFNNWSTKIP 104
            P  +++ EGG  V+ +G+     T  P
Sbjct: 68  YPAQVQYVEGGDAVYTNGAIRTAYTYNP 95


>gi|90903231 huntingtin [Homo sapiens]
          Length = 3144

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 4   TTSDRVSGERHGAKAARSEGAGGH-----APGKEHKIMVGSTDDPSVFSLPDSKLPGDKE 58
           +  D +SGE   +    + G+ GH      P  +H +   S D  S   L  S   GD+E
Sbjct: 471 SVKDEISGELAASSGVSTPGSAGHDIITEQPRSQHTLQADSVDLASC-DLTSSATDGDEE 529

Query: 59  FVSWQQDLEDSVKPTQQA 76
            +      + S  P+  A
Sbjct: 530 DILSHSSSQVSAVPSDPA 547


>gi|119120894 Dmx-like 2 [Homo sapiens]
          Length = 3036

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 17/81 (20%)

Query: 142 VTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQEMYAFRSEER 201
           +T+Q G+   L+HV + DF +      + ME  ET               E++ F+  + 
Sbjct: 839 ITNQCGSNTQLLHVFQEDFIIGYKPHKEDMEKKET---------------EIF-FQPSQG 882

Query: 202 FKSPPILPPHLLQVILNKDTN 222
           ++ PP      L V++ KD+N
Sbjct: 883 YRPPPFSEKFFL-VVIEKDSN 902


>gi|156630992 OTU domain containing 4 protein isoform 3 [Homo
           sapiens]
          Length = 1049

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 122 EHQYKFF-VDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD 180
           +H  KF   D Q +H  + PV+  +LG  +   ++K    E ++ +    M+   TS ++
Sbjct: 230 DHNGKFLNADVQGIHSENGPVLVEELGKKHTSKNLKAPPPESWNTVSGKKMKKPSTSGQN 289

Query: 181 LSSSPP--GPYGQEMYAFRSEERFKSPPILPPHL 212
             S     GP           +  K+P  LPP L
Sbjct: 290 FHSDVDYRGPK-------NPSKPIKAPSALPPRL 316


>gi|40807496 OTU domain containing 4 protein isoform 1 [Homo
           sapiens]
          Length = 1048

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 122 EHQYKFF-VDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD 180
           +H  KF   D Q +H  + PV+  +LG  +   ++K    E ++ +    M+   TS ++
Sbjct: 229 DHNGKFLNADVQGIHSENGPVLVEELGKKHTSKNLKAPPPESWNTVSGKKMKKPSTSGQN 288

Query: 181 LSSSPP--GPYGQEMYAFRSEERFKSPPILPPHL 212
             S     GP           +  K+P  LPP L
Sbjct: 289 FHSDVDYRGPK-------NPSKPIKAPSALPPRL 315


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,248,771
Number of Sequences: 37866
Number of extensions: 591985
Number of successful extensions: 1187
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 36
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.