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Search of human proteins with 4885487
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885487 myeloid leukemia factor 2 [Homo sapiens]
(248 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4885487 myeloid leukemia factor 2 [Homo sapiens] 510 e-145
gi|11967975 myeloid leukemia factor 1 isoform 1 [Homo sapiens] 154 5e-38
gi|194328680 myeloid leukemia factor 1 isoform 2 [Homo sapiens] 145 4e-35
gi|194328678 myeloid leukemia factor 1 isoform 2 [Homo sapiens] 145 4e-35
gi|13899327 nuclear receptor interacting protein 2 [Homo sapiens] 34 0.14
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 33 0.18
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 33 0.30
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ... 32 0.39
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 32 0.67
gi|42518065 tight junction protein 2 (zona occludens 2) isoform ... 31 1.1
gi|42518070 tight junction protein 2 (zona occludens 2) isoform ... 31 1.1
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ... 30 1.5
gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens] 30 1.5
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 30 1.5
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 30 1.5
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 30 1.5
gi|51944974 tumor suppressor candidate 1 [Homo sapiens] 30 2.0
gi|54112382 F-box and leucine-rich repeat protein 10 isoform a [... 30 2.5
gi|54112380 F-box and leucine-rich repeat protein 10 isoform b [... 30 2.5
gi|210032580 SET domain containing 1B [Homo sapiens] 30 2.5
gi|166197712 LSM14 homolog A isoform a [Homo sapiens] 30 2.5
gi|166197710 LSM14 homolog A isoform b [Homo sapiens] 30 2.5
gi|40316946 ADP-ribosylhydrolase like 1 isoform 2 [Homo sapiens] 30 2.5
gi|21702735 ADP-ribosylhydrolase like 1 isoform 1 [Homo sapiens] 30 2.5
gi|156564398 target of EGR1, member 1 (nuclear) [Homo sapiens] 29 3.3
gi|103471997 DNA-directed RNA polymerase I A [Homo sapiens] 29 4.3
gi|222418639 melanoma antigen family B, 2 [Homo sapiens] 28 5.7
gi|4503593 epidermal growth factor receptor pathway substrate 15... 28 5.7
gi|21735548 centrosomal protein 2 [Homo sapiens] 28 5.7
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 28 5.7
>gi|4885487 myeloid leukemia factor 2 [Homo sapiens]
Length = 248
Score = 510 bits (1314), Expect = e-145
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MFRFMRDVEPEDPMFLMDPFAIHRQHMSRMLSGGFGYSPFLSITDGNMPGTRPASRRMQQ 60
MFRFMRDVEPEDPMFLMDPFAIHRQHMSRMLSGGFGYSPFLSITDGNMPGTRPASRRMQQ
Sbjct: 1 MFRFMRDVEPEDPMFLMDPFAIHRQHMSRMLSGGFGYSPFLSITDGNMPGTRPASRRMQQ 60
Query: 61 AGAVSPFGMLGMSGGFMDMFGMMNDMIGNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKV 120
AGAVSPFGMLGMSGGFMDMFGMMNDMIGNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKV
Sbjct: 61 AGAVSPFGMLGMSGGFMDMFGMMNDMIGNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKV 120
Query: 121 YQETSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQD 180
YQETSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQD
Sbjct: 121 YQETSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQD 180
Query: 181 YINLDESEAAAFDDEWRRETSRFRQQRPLEFRRLESSGAGGRRAEGPPRLAIQGPEDSPS 240
YINLDESEAAAFDDEWRRETSRFRQQRPLEFRRLESSGAGGRRAEGPPRLAIQGPEDSPS
Sbjct: 181 YINLDESEAAAFDDEWRRETSRFRQQRPLEFRRLESSGAGGRRAEGPPRLAIQGPEDSPS 240
Query: 241 RQSRRYDW 248
RQSRRYDW
Sbjct: 241 RQSRRYDW 248
>gi|11967975 myeloid leukemia factor 1 isoform 1 [Homo sapiens]
Length = 268
Score = 154 bits (390), Expect = 5e-38
Identities = 95/259 (36%), Positives = 146/259 (56%), Gaps = 40/259 (15%)
Query: 1 MFRFMRDVEPEDPMFLMDPFAIHRQHMSRML---SGGFGYSPFLSITDGNMPGTRPASRR 57
MFR + +DP F + HR++M +M+ S FG LSI+DG R +RR
Sbjct: 1 MFRMLNSSFEDDPFF-SESILAHRENMRQMIRSFSEPFGRD-LLSISDGR---GRAHNRR 55
Query: 58 MQQAGAVSPFGMLGMSGGFMDMFGMMNDMIGNMEH-----------MTAGGNCQTFSSST 106
G S ++ + F M+ M+ NM + ++ N +F SS+
Sbjct: 56 GHNDGEDS------LTHTDVSSFQTMDQMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSS 109
Query: 107 VISYSNTGDGAPKVYQETSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQR 166
V++YS GD PKV+Q +++ R APGGI+ETR+ +RDSDSGLE+M+IGHHI DRAH++++
Sbjct: 110 VMTYSKIGDEPPKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKK 169
Query: 167 SRNHRTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQRPLEFRRLESSGAGGRRAEG 226
S+N +TGD+E Q++IN++ES+A AFD+EW+ E +++ GR G
Sbjct: 170 SKNKKTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKP---------------GRHNLG 214
Query: 227 PPRLAIQGPEDSPSRQSRR 245
R+ G E+ SR+ +R
Sbjct: 215 NTRMRSVGHENPGSRELKR 233
>gi|194328680 myeloid leukemia factor 1 isoform 2 [Homo sapiens]
Length = 243
Score = 145 bits (365), Expect = 4e-35
Identities = 87/232 (37%), Positives = 132/232 (56%), Gaps = 36/232 (15%)
Query: 25 QHMSRMLSGGFGYSPFLSITDGNMPGTRPASRRMQQAGAVSPFGMLGMSGGFMDMFGMMN 84
+ M R S FG LSI+DG R +RR G S ++ + F M+
Sbjct: 2 RQMIRSFSEPFGRD-LLSISDGR---GRAHNRRGHNDGEDS------LTHTDVSSFQTMD 51
Query: 85 DMIGNMEH-----------MTAGGNCQTFSSSTVISYSNTGDGAPKVYQETSEMRSAPGG 133
M+ NM + ++ N +F SS+V++YS GD PKV+Q +++ R APGG
Sbjct: 52 QMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTYSKIGDEPPKVFQASTQTRRAPGG 111
Query: 134 IRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFD 193
I+ETR+ +RDSDSGLE+M+IGHHI DRAH++++S+N +TGD+E Q++IN++ES+A AFD
Sbjct: 112 IKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEVNQEFINMNESDAHAFD 171
Query: 194 DEWRRETSRFRQQRPLEFRRLESSGAGGRRAEGPPRLAIQGPEDSPSRQSRR 245
+EW+ E +++ GR G R+ G E+ SR+ +R
Sbjct: 172 EEWQSEVLKYKP---------------GRHNLGNTRMRSVGHENPGSRELKR 208
>gi|194328678 myeloid leukemia factor 1 isoform 2 [Homo sapiens]
Length = 243
Score = 145 bits (365), Expect = 4e-35
Identities = 87/232 (37%), Positives = 132/232 (56%), Gaps = 36/232 (15%)
Query: 25 QHMSRMLSGGFGYSPFLSITDGNMPGTRPASRRMQQAGAVSPFGMLGMSGGFMDMFGMMN 84
+ M R S FG LSI+DG R +RR G S ++ + F M+
Sbjct: 2 RQMIRSFSEPFGRD-LLSISDGR---GRAHNRRGHNDGEDS------LTHTDVSSFQTMD 51
Query: 85 DMIGNMEH-----------MTAGGNCQTFSSSTVISYSNTGDGAPKVYQETSEMRSAPGG 133
M+ NM + ++ N +F SS+V++YS GD PKV+Q +++ R APGG
Sbjct: 52 QMVSNMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTYSKIGDEPPKVFQASTQTRRAPGG 111
Query: 134 IRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFD 193
I+ETR+ +RDSDSGLE+M+IGHHI DRAH++++S+N +TGD+E Q++IN++ES+A AFD
Sbjct: 112 IKETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEVNQEFINMNESDAHAFD 171
Query: 194 DEWRRETSRFRQQRPLEFRRLESSGAGGRRAEGPPRLAIQGPEDSPSRQSRR 245
+EW+ E +++ GR G R+ G E+ SR+ +R
Sbjct: 172 EEWQSEVLKYKP---------------GRHNLGNTRMRSVGHENPGSRELKR 208
>gi|13899327 nuclear receptor interacting protein 2 [Homo sapiens]
Length = 281
Score = 33.9 bits (76), Expect = 0.14
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 124 TSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYIN 183
+S + P G T++ R + +RDRAH+ Q+ R ++ +++
Sbjct: 40 SSPWPTPPAGAMSTKQEARRDEGEARTRGQEAQLRDRAHLSQQRR------LKQATQFLH 93
Query: 184 LDESEAAAFDDEWRRETSRFRQQRPLEFRRLESSGAGGRRAEGPPRL 230
D ++ D R TS+ Q R + RRL + E PPR+
Sbjct: 94 KDSADLLPLDSLKRLGTSKDLQPRSVIQRRLVEGNPNWLQGE-PPRM 139
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 33.5 bits (75), Expect = 0.18
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 135 RETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDD 194
RE R R+ D E R R+ R R R+ D+EER+ + + D
Sbjct: 239 RERRERSRERDKERE--------RRRSRSRDRRRRSRSRDKEERRRSRERSKDK----DR 286
Query: 195 EWRRETSRFRQQRPLEFRRLESSGAGGRRAEGPPRLAIQGPEDSP 239
+ +R +SR R++ E R E GG P P+D P
Sbjct: 287 DRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGP 331
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 32.7 bits (73), Expect = 0.30
Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 1/143 (0%)
Query: 88 GNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKVYQETSEMRSAPGGIRETRRTVRDSDSG 147
G + T+ ++ SSS+ S S + +S RS+ T + S
Sbjct: 564 GRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSS 623
Query: 148 LEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWR-RETSRFRQQ 206
S R R R R HR +R+D L+ S ++ R + S+ +
Sbjct: 624 STSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNS 683
Query: 207 RPLEFRRLESSGAGGRRAEGPPR 229
R R + S G+R+ R
Sbjct: 684 RSDRKRSISESSRSGKRSSRSER 706
>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
sapiens]
Length = 600
Score = 32.3 bits (72), Expect = 0.39
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 138 RRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWR 197
R T R+ + G ++ + G R+R ++ R +T + +RQ N + + + R
Sbjct: 129 RETEREGERGRDRQTDGQRERERQRDAEKERERQTDRERQRQTERNRQKEREREKNRQER 188
Query: 198 RETSRFRQQ 206
RE R R++
Sbjct: 189 RERERQREK 197
Score = 27.7 bits (60), Expect = 9.7
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 135 RETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDD 194
+ RRT RD ++ ++ R+R +R R + ERQ E+E D
Sbjct: 286 KRQRRTERDRETERKRERQRERERERERNRKRERERERERERERQR-----ETER---DR 337
Query: 195 EWRRETSRFRQQRPLEFRRLESSGAGGRRAE 225
E RE R RQ R ++ G R+AE
Sbjct: 338 EKERERKRKRQTEMDRERNRQTGREGRRQAE 368
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 31.6 bits (70), Expect = 0.67
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 174 DQEERQDYINLDESEAAAFDDEWRRETSRFRQQRPLEFRR----------LESSGAGGRR 223
++E+ ++Y +E E F++E+ E ++ E LE AGG
Sbjct: 913 EEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAGGEV 972
Query: 224 AEG---PPRL--AIQGPEDSPSRQ 242
EG PP L A+ PE P Q
Sbjct: 973 EEGAPPPPTLPPALPPPESPPKVQ 996
>gi|42518065 tight junction protein 2 (zona occludens 2) isoform 2
[Homo sapiens]
Length = 1043
Score = 30.8 bits (68), Expect = 1.1
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 13/140 (9%)
Query: 111 SNTGDGAPKVYQETSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNH 170
S + + +P+ + RS + R R + GL+Q R R L+R +H
Sbjct: 168 SRSWEDSPERGRPHERARSRERDLSRDRSRGRSLERGLDQDHARTRDRSRGRSLERGLDH 227
Query: 171 RTGDQEERQDYINLDESEAAAFDDEWRRETSR-----FRQQRPLEFRRLESSGAGGRRAE 225
G +R + D S + D ++ R R + + E+RR A R+
Sbjct: 228 DFGPSRDR----DRDRSRGRSIDQDYERAYHRAYDPDYERAYSPEYRRGARHDA---RSR 280
Query: 226 GPPRLAIQGPED-SPSRQSR 244
GP + + P SPS + R
Sbjct: 281 GPRSRSREHPHSRSPSPEPR 300
>gi|42518070 tight junction protein 2 (zona occludens 2) isoform 1
[Homo sapiens]
Length = 1190
Score = 30.8 bits (68), Expect = 1.1
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 13/140 (9%)
Query: 111 SNTGDGAPKVYQETSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNH 170
S + + +P+ + RS + R R + GL+Q R R L+R +H
Sbjct: 168 SRSWEDSPERGRPHERARSRERDLSRDRSRGRSLERGLDQDHARTRDRSRGRSLERGLDH 227
Query: 171 RTGDQEERQDYINLDESEAAAFDDEWRRETSR-----FRQQRPLEFRRLESSGAGGRRAE 225
G +R + D S + D ++ R R + + E+RR A R+
Sbjct: 228 DFGPSRDR----DRDRSRGRSIDQDYERAYHRAYDPDYERAYSPEYRRGARHDA---RSR 280
Query: 226 GPPRLAIQGPED-SPSRQSR 244
GP + + P SPS + R
Sbjct: 281 GPRSRSREHPHSRSPSPEPR 300
>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
sapiens]
Length = 537
Score = 30.4 bits (67), Expect = 1.5
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 21/138 (15%)
Query: 99 CQTFSSSTVISYSNTGDGAPKVYQETSEMRSAPGG--IRETRRTVRDSDSGLEQMSIGHH 156
C S+S +S +++ TS + + GG + RT RD
Sbjct: 114 CTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDG------------ 161
Query: 157 IRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQRPLEFRRLES 216
+RDR +L R+ R+ ++ L E +A D R + + FRR
Sbjct: 162 LRDRGRLLSRNST-------ARRSFLELKEVDAVDEQDVVREGEAPTPPRGKTSFRRQGR 214
Query: 217 SGAGGRRAEGPPRLAIQG 234
G G R PP + +G
Sbjct: 215 GGGGARAISPPPTVCRRG 232
>gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens]
Length = 852
Score = 30.4 bits (67), Expect = 1.5
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 140 TVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRE 199
T R D G E S H RD + RS G QE + DY + E ++A + +
Sbjct: 19 TDRSQDDGGENRSRDHDYRDMDY---RSYPREYGSQEGKHDYDDSSEEQSAEIRGQLQ-- 73
Query: 200 TSRFRQQRPLEFRRLESSG 218
S Q R + R +SSG
Sbjct: 74 -SHGVQAREVRLMRNKSSG 91
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 [Homo
sapiens]
Length = 1125
Score = 30.4 bits (67), Expect = 1.5
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 158 RDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQRPLEFRRLESS 217
RD+ +RS +R + ER N D + EW R + + R LE R SS
Sbjct: 973 RDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERNRRSS 1032
Query: 218 GAGGRRAEGPPRLAIQGPEDSPSRQ 242
G R + R + + E++ ++
Sbjct: 1033 GHRDRERDSRDRESRREKEEARGKE 1057
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 [Homo
sapiens]
Length = 1132
Score = 30.4 bits (67), Expect = 1.5
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 158 RDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQRPLEFRRLESS 217
RD+ +RS +R + ER N D + EW R + + R LE R SS
Sbjct: 980 RDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERNRRSS 1039
Query: 218 GAGGRRAEGPPRLAIQGPEDSPSRQ 242
G R + R + + E++ ++
Sbjct: 1040 GHRDRERDSRDRESRREKEEARGKE 1064
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [Homo
sapiens]
Length = 1147
Score = 30.4 bits (67), Expect = 1.5
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 158 RDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQRPLEFRRLESS 217
RD+ +RS +R + ER N D + EW R + + R LE R SS
Sbjct: 995 RDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERNRRSS 1054
Query: 218 GAGGRRAEGPPRLAIQGPEDSPSRQ 242
G R + R + + E++ ++
Sbjct: 1055 GHRDRERDSRDRESRREKEEARGKE 1079
>gi|51944974 tumor suppressor candidate 1 [Homo sapiens]
Length = 212
Score = 30.0 bits (66), Expect = 2.0
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 176 EERQDYINLDESEAAAFDDEWRRETSRFRQQRP---LEFRRLESSGAG---------GRR 223
EER + EA DEW R+ +R RQ+ LE RRL+ G
Sbjct: 62 EERFADLAASHLEAIRARDEWDRQNARLRQENARLRLENRRLKRENRSLFRQALRLPGEG 121
Query: 224 AEGPPRLAIQGPEDSPSRQSRR 245
G P A + PE++ + + R
Sbjct: 122 GNGTPAEARRVPEEASTNRRAR 143
>gi|54112382 F-box and leucine-rich repeat protein 10 isoform a
[Homo sapiens]
Length = 1336
Score = 29.6 bits (65), Expect = 2.5
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 168 RNHRTGDQEERQDYINLDESEAAAFD----DEWRRETSRFRQQRPLEFRRLESSGAGGRR 223
R+H T QE +++ + +D + D D W Q+P E + G G R
Sbjct: 377 RSHLT--QEYQRESMLIDAPRKPSIDGFSSDSWLEMEEEACDQQPQEEEEKDEEGEGRDR 434
Query: 224 AEGPPRLAIQGPEDSPS 240
A PP P +PS
Sbjct: 435 APKPPTDGSTSPTSTPS 451
>gi|54112380 F-box and leucine-rich repeat protein 10 isoform b
[Homo sapiens]
Length = 1265
Score = 29.6 bits (65), Expect = 2.5
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 168 RNHRTGDQEERQDYINLDESEAAAFD----DEWRRETSRFRQQRPLEFRRLESSGAGGRR 223
R+H T QE +++ + +D + D D W Q+P E + G G R
Sbjct: 346 RSHLT--QEYQRESMLIDAPRKPSIDGFSSDSWLEMEEEACDQQPQEEEEKDEEGEGRDR 403
Query: 224 AEGPPRLAIQGPEDSPS 240
A PP P +PS
Sbjct: 404 APKPPTDGSTSPTSTPS 420
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 29.6 bits (65), Expect = 2.5
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 172 TGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQRPLEFRRLESSGAGGRRAEGPP-RL 230
+GDQ+ + ++DE D+E RE R P E + + G G RR P L
Sbjct: 975 SGDQKRLRPSTSVDEE-----DEESERERDRDMADTPCELAKRDPKGVGVRRRPARPLEL 1029
Query: 231 AIQGPEDSPSRQSRRYD 247
G ED S +
Sbjct: 1030 DSGGEEDEKESLSEEQE 1046
>gi|166197712 LSM14 homolog A isoform a [Homo sapiens]
Length = 463
Score = 29.6 bits (65), Expect = 2.5
Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 32/187 (17%)
Query: 10 PEDPMFLMDPFAIHRQHMSRMLSGGFGYSPFLSITDGNMPGTR---PASRRMQQAGAVSP 66
P+DP + M S Y PF G MP P+S QQ GAV
Sbjct: 88 PQDPAIVQSSLGSSTSSFQSMGS----YGPF-----GRMPTYSQFSPSSLVGQQFGAV-- 136
Query: 67 FGMLGMSGGFMDMFGMMNDMIGNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKV------ 120
G++G + FG G + +A G+ T + ++ + + G +P++
Sbjct: 137 ----GVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQGRSSPQLDPLRKS 192
Query: 121 ------YQETSEMRSAPGGI-RETRRTVRDSDSGLEQMSIG-HHIRDRAHILQRSRNHRT 172
Q S AP + R + + R S ++ H R H + R N +
Sbjct: 193 PTMEQAVQTASAHLPAPAAVGRRSPVSTRPLPSASQKAGENQEHRRAEVHKVSRPENEQL 252
Query: 173 GDQEERQ 179
+ +RQ
Sbjct: 253 RNDNKRQ 259
>gi|166197710 LSM14 homolog A isoform b [Homo sapiens]
Length = 463
Score = 29.6 bits (65), Expect = 2.5
Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 32/187 (17%)
Query: 10 PEDPMFLMDPFAIHRQHMSRMLSGGFGYSPFLSITDGNMPGTR---PASRRMQQAGAVSP 66
P+DP + M S Y PF G MP P+S QQ GAV
Sbjct: 88 PQDPAIVQSSLGSSTSSFQSMGS----YGPF-----GRMPTYSQFSPSSLVGQQFGAV-- 136
Query: 67 FGMLGMSGGFMDMFGMMNDMIGNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKV------ 120
G++G + FG G + +A G+ T + ++ + + G +P++
Sbjct: 137 ----GVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQGRSSPQLDPLRKS 192
Query: 121 ------YQETSEMRSAPGGI-RETRRTVRDSDSGLEQMSIG-HHIRDRAHILQRSRNHRT 172
Q S AP + R + + R S ++ H R H + R N +
Sbjct: 193 PTMEQAVQTASAHLPAPAAVGRRSPVSTRPLPSASQKAGENQEHRRAEVHKVSRPENEQL 252
Query: 173 GDQEERQ 179
+ +RQ
Sbjct: 253 RNDNKRQ 259
>gi|40316946 ADP-ribosylhydrolase like 1 isoform 2 [Homo sapiens]
Length = 272
Score = 29.6 bits (65), Expect = 2.5
Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 23/144 (15%)
Query: 88 GNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKVYQETSEMRSAPGGIRETRRTVRDSDSG 147
G M H G + ++ +S++ G P V +R+ P R+T+R
Sbjct: 78 GRMTHNHPTGFLGSLCTALFVSFA--AQGKPLVQWGRDMLRAVPLAEEYCRKTIR----- 130
Query: 148 LEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQR 207
H + H + +E + I+ D A F D + E +R
Sbjct: 131 -------HTAEYQEHWFYFEAKWQFYLEERK---ISKDSENKAIFPDNYDAE------ER 174
Query: 208 PLEFRRLESSGAGGRRAEGPPRLA 231
+R+ S G GGRR P +A
Sbjct: 175 EKTYRKWSSEGRGGRRGHDAPMIA 198
>gi|21702735 ADP-ribosylhydrolase like 1 isoform 1 [Homo sapiens]
Length = 354
Score = 29.6 bits (65), Expect = 2.5
Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 23/144 (15%)
Query: 88 GNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKVYQETSEMRSAPGGIRETRRTVRDSDSG 147
G M H G + ++ +S++ G P V +R+ P R+T+R
Sbjct: 160 GRMTHNHPTGFLGSLCTALFVSFA--AQGKPLVQWGRDMLRAVPLAEEYCRKTIR----- 212
Query: 148 LEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQR 207
H + H + +E + I+ D A F D + E +R
Sbjct: 213 -------HTAEYQEHWFYFEAKWQFYLEERK---ISKDSENKAIFPDNYDAE------ER 256
Query: 208 PLEFRRLESSGAGGRRAEGPPRLA 231
+R+ S G GGRR P +A
Sbjct: 257 EKTYRKWSSEGRGGRRGHDAPMIA 280
>gi|156564398 target of EGR1, member 1 (nuclear) [Homo sapiens]
Length = 510
Score = 29.3 bits (64), Expect = 3.3
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 184 LDESEAAAFDDEWRRETSRFRQQRPLEFRRLESSGAGGRRAEGPPRLAIQGPEDSP 239
+D EAAA D RR R R++R L + G +GPP+ + G P
Sbjct: 325 IDTDEAAAEDKRRRR---RRREKRKRALLNLPGTQTSGEAKDGPPKKQVCGDSIKP 377
>gi|103471997 DNA-directed RNA polymerase I A [Homo sapiens]
Length = 1720
Score = 28.9 bits (63), Expect = 4.3
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 159 DRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQRPLEFRRLESSG 218
D A L RSR + GD+EE ++ + E A + +R+ +Q+ +++ E
Sbjct: 1378 DNAGELGRSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKE---KQEEEVDYESEEEEE 1434
Query: 219 AGGRRAEGPPRLAIQGPEDSPSRQSRRYD 247
G + + P +R+++ D
Sbjct: 1435 REGEENDDEDMQEERNPHREGARKTQEQD 1463
>gi|222418639 melanoma antigen family B, 2 [Homo sapiens]
Length = 319
Score = 28.5 bits (62), Expect = 5.7
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 169 NHRTGDQEERQDYINL----DESEAAAFDDEWRRETSRFRQQRPLEFRRLESS 217
N + +EE +++N+ D E + F + W+ T Q++ LE++++ SS
Sbjct: 214 NGNSATEEEIWEFLNMLGVYDGEEHSVFGEPWKLITKDLVQEKYLEYKQVPSS 266
>gi|4503593 epidermal growth factor receptor pathway substrate 15
isoform A [Homo sapiens]
Length = 896
Score = 28.5 bits (62), Expect = 5.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 164 LQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQ 205
LQR +N+ D +E++D I SE DE +RE + ++
Sbjct: 345 LQREKNNVEQDLKEKEDTIKQRTSEVQDLQDEVQRENTNLQK 386
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 28.5 bits (62), Expect = 5.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 158 RDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRET 200
R++ LQR + H T D E R + L + +D+ R+T
Sbjct: 1636 REQIEELQRQKEHLTQDLERRDQELMLQKERIQVLEDQRTRQT 1678
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 28.5 bits (62), Expect = 5.7
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 45 DGNMPGTRPASRRMQQAGAVSPFGMLGMSG--GFMDMFGMMND 85
D MPG R + AGA+ P G G G GF G M D
Sbjct: 371 DAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGD 413
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,349,154
Number of Sequences: 37866
Number of extensions: 468035
Number of successful extensions: 1662
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1632
Number of HSP's gapped (non-prelim): 53
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.