Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 48527957
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48527957 galactokinase 2 isoform 2 [Homo sapiens]
(447 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48527957 galactokinase 2 isoform 2 [Homo sapiens] 897 0.0
gi|4503897 galactokinase 2 isoform 1 [Homo sapiens] 885 0.0
gi|4503895 galactokinase 1 [Homo sapiens] 157 2e-38
gi|242117946 hypothetical protein LOC57579 isoform c [Homo sapiens] 37 0.036
gi|157671937 hypothetical protein LOC57579 isoform a [Homo sapiens] 37 0.036
gi|167001643 mevalonate kinase [Homo sapiens] 37 0.048
gi|4557769 mevalonate kinase [Homo sapiens] 37 0.048
gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo sa... 37 0.048
gi|92091575 coiled-coil domain containing 57 [Homo sapiens] 33 0.53
gi|82880658 heat shock 70kDa protein 14 isoform 1 [Homo sapiens] 30 3.4
gi|199562283 retrotransposon-like 1 [Homo sapiens] 30 4.4
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 30 4.4
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 30 4.4
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 30 4.4
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 30 5.8
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 30 5.8
gi|34996489 pleckstrin homology domain interacting protein [Homo... 30 5.8
gi|166851840 E74-like factor 3 (ets domain transcription factor,... 30 5.8
gi|167235023 E74-like factor 3 (ets domain transcription factor,... 30 5.8
gi|239750380 PREDICTED: similar to hCG1640792 [Homo sapiens] 29 7.6
gi|239744682 PREDICTED: hypothetical protein XP_002343241 [Homo ... 29 7.6
gi|153792305 leucine rich repeat containing 58 [Homo sapiens] 29 7.6
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 29 9.9
gi|38045938 ring finger protein 144 [Homo sapiens] 29 9.9
>gi|48527957 galactokinase 2 isoform 2 [Homo sapiens]
Length = 447
Score = 897 bits (2318), Expect = 0.0
Identities = 447/447 (100%), Positives = 447/447 (100%)
Query: 1 MPVLYDRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAV 60
MPVLYDRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAV
Sbjct: 1 MPVLYDRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAV 60
Query: 61 EPVKTYALQLANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMN 120
EPVKTYALQLANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMN
Sbjct: 61 EPVKTYALQLANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMN 120
Query: 121 CLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQ 180
CLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQ
Sbjct: 121 CLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQ 180
Query: 181 SISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAA 240
SISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAA
Sbjct: 181 SISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAA 240
Query: 241 KLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEEL 300
KLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEEL
Sbjct: 241 KLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEEL 300
Query: 301 RTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSC 360
RTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSC
Sbjct: 301 RTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSC 360
Query: 361 RDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQR 420
RDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQR
Sbjct: 361 RDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQR 420
Query: 421 SDGSLAPEKQSLFATKPGGGALVLLEA 447
SDGSLAPEKQSLFATKPGGGALVLLEA
Sbjct: 421 SDGSLAPEKQSLFATKPGGGALVLLEA 447
>gi|4503897 galactokinase 2 isoform 1 [Homo sapiens]
Length = 458
Score = 885 bits (2286), Expect = 0.0
Identities = 441/443 (99%), Positives = 442/443 (99%)
Query: 5 YDRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVK 64
+ RLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVK
Sbjct: 16 HPRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVK 75
Query: 65 TYALQLANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVD 124
TYALQLANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVD
Sbjct: 76 TYALQLANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVD 135
Query: 125 GNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISF 184
GNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISF
Sbjct: 136 GNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISF 195
Query: 185 LAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLA 244
LAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLA
Sbjct: 196 LAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLA 255
Query: 245 KYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQI 304
KYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQI
Sbjct: 256 KYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQI 315
Query: 305 LSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMY 364
LSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMY
Sbjct: 316 LSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMY 375
Query: 365 ECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGS 424
ECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGS
Sbjct: 376 ECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGS 435
Query: 425 LAPEKQSLFATKPGGGALVLLEA 447
LAPEKQSLFATKPGGGALVLLEA
Sbjct: 436 LAPEKQSLFATKPGGGALVLLEA 458
>gi|4503895 galactokinase 1 [Homo sapiens]
Length = 392
Score = 157 bits (397), Expect = 2e-38
Identities = 122/423 (28%), Positives = 190/423 (44%), Gaps = 64/423 (15%)
Query: 2 PVLYDRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVE 61
P + + L + + F +FG+ P+ V APGRVN+IGEH DY VLPMA+E ++
Sbjct: 7 PQVAELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGS 66
Query: 62 PVKTYALQLANTN-----PLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNL 116
P K + L T+ P F ++ P W NY +KG+ +++ + L
Sbjct: 67 PRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANY----VKGVIQYYPAAPL 122
Query: 117 TGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSER-YIGTEG 175
G + +V ++P GLSSS++L + + + A++C ++E + G
Sbjct: 123 PGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPC 182
Query: 176 GGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVME 235
G MDQ IS + ++G A LI+ L + V L + V+ + + A+S + +R +
Sbjct: 183 GIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLASSEYPVRRRQ 242
Query: 236 CRLAAKLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGI 295
C A+ L K L EVQ
Sbjct: 243 CEEVARALGKES---------LREVQ---------------------------------- 259
Query: 296 SLEELRTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQ 355
LEEL +D++ + ++RA+HV E R Q + G LM +
Sbjct: 260 -LEELEA------ARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGD---YRAFGRLMVE 309
Query: 356 SHMSCRDMYECSCPELDQLVDICRKF-GAQGSRLTGAGWGGCTVSMVPADKLPSFLANVH 414
SH S RD YE SCPELDQLV+ G GSR+TG G+GGCTV+++ A P + ++
Sbjct: 310 SHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQ 369
Query: 415 KAY 417
+ Y
Sbjct: 370 EHY 372
>gi|242117946 hypothetical protein LOC57579 isoform c [Homo sapiens]
Length = 1515
Score = 37.0 bits (84), Expect = 0.036
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 207 PSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGI 266
P G F+IA+S ++ A H+ L A LL +K L + EE+ + +
Sbjct: 222 PDGCSFIIADSF--LHHAYRFHYT-------LCATLLLAFKGLHSYFITVTEEIPSCQKL 272
Query: 267 SLEEMLL------VTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQR 320
LEEM + + E+ E NP+E+ + ++L +L + +++ Q + + L++
Sbjct: 273 ELEEMDVEARLTELCEEVKKIE--NPDELAELINMNLAQLCSLLMALWGQFLEVITLHEE 330
Query: 321 AKHVYSEAARVLQFKK-----ICEEAPENMVQLLGELMNQSHM 358
+ + ++ L+ ++ C E P EL QSH+
Sbjct: 331 LRILLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHL 373
>gi|157671937 hypothetical protein LOC57579 isoform a [Homo sapiens]
Length = 1319
Score = 37.0 bits (84), Expect = 0.036
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 207 PSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGI 266
P G F+IA+S ++ A H+ L A LL +K L + EE+ + +
Sbjct: 222 PDGCSFIIADSF--LHHAYRFHYT-------LCATLLLAFKGLHSYFITVTEEIPSCQKL 272
Query: 267 SLEEMLL------VTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQR 320
LEEM + + E+ E NP+E+ + ++L +L + +++ Q + + L++
Sbjct: 273 ELEEMDVEARLTELCEEVKKIE--NPDELAELINMNLAQLCSLLMALWGQFLEVITLHEE 330
Query: 321 AKHVYSEAARVLQFKK-----ICEEAPENMVQLLGELMNQSHM 358
+ + ++ L+ ++ C E P EL QSH+
Sbjct: 331 LRILLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHL 373
>gi|167001643 mevalonate kinase [Homo sapiens]
Length = 396
Score = 36.6 bits (83), Expect = 0.048
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 341 APENMVQLLGEL--MNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTV 398
APE + +L EL MNQ H++ + S LDQL + R G S+LTGAG GGC +
Sbjct: 287 APEQYL-VLEELIDMNQHHLNALGVGHAS---LDQLCQVTRARGLH-SKLTGAGGGGCGI 341
Query: 399 SMV 401
+++
Sbjct: 342 TLL 344
>gi|4557769 mevalonate kinase [Homo sapiens]
Length = 396
Score = 36.6 bits (83), Expect = 0.048
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 341 APENMVQLLGEL--MNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTV 398
APE + +L EL MNQ H++ + S LDQL + R G S+LTGAG GGC +
Sbjct: 287 APEQYL-VLEELIDMNQHHLNALGVGHAS---LDQLCQVTRARGLH-SKLTGAGGGGCGI 341
Query: 399 SMV 401
+++
Sbjct: 342 TLL 344
>gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo
sapiens]
Length = 1925
Score = 36.6 bits (83), Expect = 0.048
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Query: 196 FSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSLQWDKVL 255
FSPL T G A N AAT+H+ +R++ L + L AK K L + VL
Sbjct: 946 FSPLEETKYLFQVGMWVWEAGLSPNANPAATTHYMLRLVGVGLTSSLSAKEKELAFGNVL 1005
Query: 256 RLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQ-ILSPNTQDVLI 314
+ Q++ + L + L+ E +PE + ++L+ RT+ + P +QD +
Sbjct: 1006 -VNSKQSRFLVLLNDGNCTLYYRLYLEQGSPEAVDN-HPLALQLDRTEGSMPPRSQDTIC 1063
Query: 315 FKLYQRAKHVYS 326
+ + YS
Sbjct: 1064 LTACPKQRSQYS 1075
>gi|92091575 coiled-coil domain containing 57 [Homo sapiens]
Length = 915
Score = 33.1 bits (74), Expect = 0.53
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 245 KYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQI 304
+Y++L+W +LEE+ +L + +E+LL E + + + + +
Sbjct: 148 QYENLKWTLERKLEELDGELALQRQELLLEFESKMRKREHE-------FRLQADNMSNTA 200
Query: 305 LSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQ-LLGELMNQSHMS 359
LS + L+ K + K ++AA LQ + E +Q GEL + MS
Sbjct: 201 LSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMS 256
>gi|82880658 heat shock 70kDa protein 14 isoform 1 [Homo sapiens]
Length = 509
Score = 30.4 bits (67), Expect = 3.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 285 NPEEICRCLGISLEELRTQILSPNTQDVLI---FKLYQRAKHVYSEAARVLQF 334
NPE++ R + ++E +L + DV+I F ++ K+ EAAR F
Sbjct: 112 NPEDVARLIFSKMKETAHSVLGSDANDVVITVPFDFGEKQKNALGEAARAAGF 164
>gi|199562283 retrotransposon-like 1 [Homo sapiens]
Length = 1358
Score = 30.0 bits (66), Expect = 4.4
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 256 RLEEV-QAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLI 314
R E+V +A G+ LEEM AL P+P P+ + + L+++ + Q+VLI
Sbjct: 681 RTEDVWKAAFGLELEEMKSYQPFALSPDPIIPQNVIHFI---LKDMLGFFVLSYGQEVLI 737
Query: 315 FKLYQRAKHVYSEAARVLQFK 335
+ + Q +H++ +++F+
Sbjct: 738 YSMSQE-EHLHHVRQVLVRFR 757
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 30.0 bits (66), Expect = 4.4
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 275 TEDALHPEPYNPEEICRCLGISLEELRTQILSP------------NTQDVLIFKLYQRAK 322
T+ A P+ +++CR LG+ + + +L+P T++ F L AK
Sbjct: 394 TDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAK 453
Query: 323 HVYSEAAR--VLQFKKICEEAPENMVQLLGEL 352
Y R VL+ + + +P LG L
Sbjct: 454 ATYERLFRWLVLRLNRALDRSPRQGASFLGIL 485
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 30.0 bits (66), Expect = 4.4
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 275 TEDALHPEPYNPEEICRCLGISLEELRTQILSP------------NTQDVLIFKLYQRAK 322
T+ A P+ +++CR LG+ + + +L+P T++ F L AK
Sbjct: 386 TDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAK 445
Query: 323 HVYSEAAR--VLQFKKICEEAPENMVQLLGEL 352
Y R VL+ + + +P LG L
Sbjct: 446 ATYERLFRWLVLRLNRALDRSPRQGASFLGIL 477
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 30.0 bits (66), Expect = 4.4
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 275 TEDALHPEPYNPEEICRCLGISLEELRTQILSP------------NTQDVLIFKLYQRAK 322
T+ A P+ +++CR LG+ + + +L+P T++ F L AK
Sbjct: 394 TDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAK 453
Query: 323 HVYSEAAR--VLQFKKICEEAPENMVQLLGEL 352
Y R VL+ + + +P LG L
Sbjct: 454 ATYERLFRWLVLRLNRALDRSPRQGASFLGIL 485
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 29.6 bits (65), Expect = 5.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 131 SGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSER 169
+G +A V G+VT T G+ + K E+C K+ R
Sbjct: 251 AGAGGGAAAVAAGGVVTTTASGKRIRKNHACEMCGKAFR 289
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 29.6 bits (65), Expect = 5.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 131 SGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSER 169
+G +A V G+VT T G+ + K E+C K+ R
Sbjct: 251 AGAGGGAAAVAAGGVVTTTASGKRIRKNHACEMCGKAFR 289
>gi|34996489 pleckstrin homology domain interacting protein [Homo
sapiens]
Length = 1821
Score = 29.6 bits (65), Expect = 5.8
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 142 CAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISF-LAEEGTAKLIEFSPLR 200
CA L L +++ ++ + +C+ S+RY+ + G D +I F L + GT K+ +P
Sbjct: 257 CAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGA--DGTICFWLWDAGTLKI---NPRP 311
Query: 201 ATDVKLPSGAVFVIANS 217
A + P V +I +S
Sbjct: 312 AKFTERPRPGVQMICSS 328
>gi|166851840 E74-like factor 3 (ets domain transcription factor,
epithelial-specific ) [Homo sapiens]
Length = 371
Score = 29.6 bits (65), Expect = 5.8
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 312 VLIFKLYQRAKHVYSEAARVLQFKK-------ICEEAPENMVQLLGELMNQSHMSCRDMY 364
VL + YQ K+ Y +A + F + +C A E + + G L +Q H RD+
Sbjct: 72 VLDWISYQVEKNKYDASA--IDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQLRDLT 129
Query: 365 ECSCPELDQLVDICRKFG 382
S EL ++++ K G
Sbjct: 130 SSSSDELSWIIELLEKDG 147
>gi|167235023 E74-like factor 3 (ets domain transcription factor,
epithelial-specific ) [Homo sapiens]
Length = 371
Score = 29.6 bits (65), Expect = 5.8
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 312 VLIFKLYQRAKHVYSEAARVLQFKK-------ICEEAPENMVQLLGELMNQSHMSCRDMY 364
VL + YQ K+ Y +A + F + +C A E + + G L +Q H RD+
Sbjct: 72 VLDWISYQVEKNKYDASA--IDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQLRDLT 129
Query: 365 ECSCPELDQLVDICRKFG 382
S EL ++++ K G
Sbjct: 130 SSSSDELSWIIELLEKDG 147
>gi|239750380 PREDICTED: similar to hCG1640792 [Homo sapiens]
Length = 215
Score = 29.3 bits (64), Expect = 7.6
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 70 LANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHF 111
LA+ PD S + I I K +W N LCGLK Q F
Sbjct: 84 LAHPAQFSPDDKYSRHRITIKKRLKVWTNNTLCGLKTNQIKF 125
>gi|239744682 PREDICTED: hypothetical protein XP_002343241 [Homo
sapiens]
Length = 215
Score = 29.3 bits (64), Expect = 7.6
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 70 LANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHF 111
LA+ PD S + I I K +W N LCGLK Q F
Sbjct: 84 LAHPAQFSPDDKYSRHRITIKKRLKVWTNNTLCGLKTNQIKF 125
>gi|153792305 leucine rich repeat containing 58 [Homo sapiens]
Length = 371
Score = 29.3 bits (64), Expect = 7.6
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 328 AARVLQFKKICE---EAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKF 381
AAR ++ + I + P N+++ LG N + C +Y C + VD C K+
Sbjct: 266 AARTIKIRNISYTPYDLPGNLLRYLGSASNCPNPKCGGVYFDCCVRQIKFVDFCGKY 322
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 28.9 bits (63), Expect = 9.9
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 19/137 (13%)
Query: 238 LAAKLLAKYKSLQWDKVL------RLEEVQAKLGISLEEMLLV-------TEDALHPEPY 284
L A +A SLQ + L R+E++ A+ +E+ + E AL EP
Sbjct: 68 LPATEMASLLSLQEENQLLQQELSRVEDLLAQSRAERDELAIKYNAVSERLEQALRLEPG 127
Query: 285 NPE-EICRCLGISLEELRTQILSPNTQDVLIFKLYQ-----RAKHVYSEAARVLQFKKIC 338
E + R L ELR Q+ + YQ +A+ V ++LQ+KK C
Sbjct: 128 ELETQEPRGLVRQSVELRRQLQEEQASYRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRC 187
Query: 339 EEAPENMVQLLGELMNQ 355
E + +++ GEL Q
Sbjct: 188 SELEQQLLERSGELEQQ 204
>gi|38045938 ring finger protein 144 [Homo sapiens]
Length = 292
Score = 28.9 bits (63), Expect = 9.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 215 ANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSLQWDK 253
A SC + H +EC +AA+++ +YK LQ+++
Sbjct: 62 AISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFER 100
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,850,185
Number of Sequences: 37866
Number of extensions: 735727
Number of successful extensions: 1579
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 32
length of query: 447
length of database: 18,247,518
effective HSP length: 105
effective length of query: 342
effective length of database: 14,271,588
effective search space: 4880883096
effective search space used: 4880883096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.