Guide to the Human Genome
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Name: LOC100133477 Sequence: fasta or formatted (215aa) NCBI GI: 239750380
Description:

PREDICTED: similar to hCG1640792

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          8           1
 C cysteine            0.9          2           1
 D aspartate           5.6         12           2
 E glutamate           3.7          8           1
 F phenylalanine       3.3          7           1
 G glycine             5.6         12           1
 H histidine           3.7          8           1
 I isoleucine          7.0         15           1
 K lysine             13.5         29           2
 L leucine             7.4         16           1
 M methionine          2.8          6           2
 N asparagine          4.2          9           2
 P proline             3.7          8           3
 Q glutamine           6.0         13           2
 R arginine            6.0         13           1
 S serine              7.9         17           2
 T threonine           6.0         13           2
 V valine              5.1         11           1
 W tryptophan          1.4          3           1
 Y tyrosine            2.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1640792 
LOC100289143          1.000   PREDICTED: hypothetical protein XP_002343241 
NOP10                 0.158   nucleolar protein family A, member 3 
GALK2                 0.010   galactokinase 2 isoform 2 
GALK2                 0.010   galactokinase 2 isoform 1 
TBP                   0.007   TATA box binding protein 
C10orf118             0.007   CTCL tumor antigen L14-2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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