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Search of human proteins with 4826898
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4826898 profilin 1 [Homo sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4826898 profilin 1 [Homo sapiens] 286 3e-78
gi|4505751 profilin 2 isoform b [Homo sapiens] 189 6e-49
gi|16753215 profilin 2 isoform a [Homo sapiens] 185 1e-47
gi|71274140 profilin 3 [Homo sapiens] 117 2e-27
gi|239741295 PREDICTED: similar to PDE4DIP protein [Homo sapiens] 94 4e-20
gi|157805480 pregnancy specific beta-1-glycoprotein 7 precursor ... 30 0.65
gi|239754269 PREDICTED: hypothetical protein [Homo sapiens] 28 1.9
gi|169168665 PREDICTED: hypothetical protein [Homo sapiens] 28 1.9
gi|113417486 PREDICTED: hypothetical protein [Homo sapiens] 28 1.9
gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo ... 28 1.9
gi|239740777 PREDICTED: hypothetical protein [Homo sapiens] 28 1.9
gi|239740724 PREDICTED: hypothetical protein [Homo sapiens] 28 1.9
gi|239740674 PREDICTED: hypothetical protein [Homo sapiens] 28 1.9
gi|239740645 PREDICTED: hypothetical protein [Homo sapiens] 28 1.9
gi|239513940 PREDICTED: hypothetical protein [Homo sapiens] 28 1.9
gi|239740898 PREDICTED: hypothetical protein [Homo sapiens] 28 2.5
gi|94721327 basonuclin 2 [Homo sapiens] 28 2.5
gi|194272183 G protein-coupled receptor 124 [Homo sapiens] 27 4.2
gi|47419900 pregnancy specific beta-1-glycoprotein 4 isoform 2 [... 27 4.2
gi|42560235 pregnancy specific beta-1-glycoprotein 4 isoform 1 [... 27 4.2
gi|157388939 WD repeat domain, phosphoinositide interacting 1 [H... 27 5.5
gi|194328712 pregnancy specific beta-1-glycoprotein 8 isoform c ... 27 7.1
gi|194328710 pregnancy specific beta-1-glycoprotein 8 isoform b ... 27 7.1
>gi|4826898 profilin 1 [Homo sapiens]
Length = 140
Score = 286 bits (733), Expect = 3e-78
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY 60
MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY
Sbjct: 1 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY 60
Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120
VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH
Sbjct: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120
Query: 121 GGLINKKCYEMASHLRRSQY 140
GGLINKKCYEMASHLRRSQY
Sbjct: 121 GGLINKKCYEMASHLRRSQY 140
>gi|4505751 profilin 2 isoform b [Homo sapiens]
Length = 140
Score = 189 bits (480), Expect = 6e-49
Identities = 87/138 (63%), Positives = 108/138 (78%)
Query: 1 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY 60
MAGW +Y+DNLM DG CQ+AAIVGY D+ VWAA G F +ITP E+ ++VGKDR F+
Sbjct: 1 MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFF 60
Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120
NGLTLG +KCSVIRDSL DG+ +MD+RTKS GG PT+NV V + + LV++MGKEGVH
Sbjct: 61 TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRALVIVMGKEGVH 120
Query: 121 GGLINKKCYEMASHLRRS 138
GG +NKK YE+A +LRRS
Sbjct: 121 GGTLNKKAYELALYLRRS 138
>gi|16753215 profilin 2 isoform a [Homo sapiens]
Length = 140
Score = 185 bits (469), Expect = 1e-47
Identities = 86/140 (61%), Positives = 106/140 (75%)
Query: 1 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY 60
MAGW +Y+DNLM DG CQ+AAIVGY D+ VWAA G F +ITP E+ ++VGKDR F+
Sbjct: 1 MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFF 60
Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120
NGLTLG +KCSVIRDSL DG+ +MD+RTKS GG PT+NV V + + LV +MGKEGVH
Sbjct: 61 TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVH 120
Query: 121 GGLINKKCYEMASHLRRSQY 140
GG +NKK Y MA +LR S +
Sbjct: 121 GGGLNKKAYSMAKYLRDSGF 140
>gi|71274140 profilin 3 [Homo sapiens]
Length = 137
Score = 117 bits (294), Expect = 2e-27
Identities = 60/136 (44%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 1 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY 60
M W YI ++ D D AIVG+ D+ VWA+ PG I+P EVGVL G DR +F
Sbjct: 1 MGDWKVYISAVLRDQRIDDVAIVGHADNSCVWASRPGGLLAAISPQEVGVLTGPDRHTFL 60
Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120
GL++GG++C VIRD LL +G+ +D RTK G V V + + L++LMG+ GVH
Sbjct: 61 QAGLSVGGRRCCVIRDHLLAEGDGVLDARTK---GLDARAVCVGRAPRALLVLMGRRGVH 117
Query: 121 GGLINKKCYEMASHLR 136
GG++NK +E+ LR
Sbjct: 118 GGILNKTVHELIRGLR 133
>gi|239741295 PREDICTED: similar to PDE4DIP protein [Homo sapiens]
Length = 66
Score = 94.0 bits (232), Expect = 4e-20
Identities = 47/66 (71%), Positives = 52/66 (78%)
Query: 61 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 120
+NGLTLGGQK +V+ DSLLQDGE + DL KS GAPTFNV VT T KTL LLMGKEG+H
Sbjct: 1 MNGLTLGGQKYTVVLDSLLQDGELTTDLCMKSISGAPTFNVIVTMTAKTLGLLMGKEGIH 60
Query: 121 GGLINK 126
G INK
Sbjct: 61 GNFINK 66
>gi|157805480 pregnancy specific beta-1-glycoprotein 7 precursor
[Homo sapiens]
Length = 419
Score = 30.0 bits (66), Expect = 0.65
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 58 SFYVNG-LTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTL 110
S+ +NG L GQK S+ + + G ++ +R +TG + +VTV +D TL
Sbjct: 365 SWTINGKFQLSGQKLSIPQITTKHSGLYACSVRNSATGKESSKSVTVRVSDWTL 418
>gi|239754269 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 28.5 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 90 TKSTGGAPTFNVTVTKTDKTLVLLMGKE 117
T ST G+ T V++T T+ T+V MG E
Sbjct: 96 TVSTAGSETTTVSITGTETTMVSAMGSE 123
>gi|169168665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 28.5 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 90 TKSTGGAPTFNVTVTKTDKTLVLLMGKE 117
T ST G+ T V++T T+ T+V MG E
Sbjct: 96 TVSTAGSETTTVSITGTETTMVSAMGSE 123
>gi|113417486 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 28.5 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 90 TKSTGGAPTFNVTVTKTDKTLVLLMGKE 117
T ST G+ T V++T T+ T+V MG E
Sbjct: 96 TVSTAGSETTTVSITGTETTMVSAMGSE 123
>gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo
sapiens]
Length = 1521
Score = 28.5 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 90 TKSTGGAPTFNVTVTKTDKTLVLLMGKE 117
T ST G+ T V++T T+ T+V MG E
Sbjct: 96 TVSTAGSETTTVSITGTETTMVSAMGSE 123
>gi|239740777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 28.5 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 90 TKSTGGAPTFNVTVTKTDKTLVLLMGKE 117
T ST G+ T V++T T+ T+V MG E
Sbjct: 96 TVSTAGSETTTVSITGTETTMVSAMGSE 123
>gi|239740724 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1704
Score = 28.5 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 90 TKSTGGAPTFNVTVTKTDKTLVLLMGKE 117
T ST G+ T V++T T+ T+V MG E
Sbjct: 96 TVSTAGSETTTVSITGTETTMVSAMGSE 123
>gi|239740674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 28.5 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 90 TKSTGGAPTFNVTVTKTDKTLVLLMGKE 117
T ST G+ T V++T T+ T+V MG E
Sbjct: 96 TVSTAGSETTTVSITGTETTMVSAMGSE 123
>gi|239740645 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 28.5 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 90 TKSTGGAPTFNVTVTKTDKTLVLLMGKE 117
T ST G+ T V++T T+ T+V MG E
Sbjct: 96 TVSTAGSETTTVSITGTETTMVSAMGSE 123
>gi|239513940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 28.5 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 90 TKSTGGAPTFNVTVTKTDKTLVLLMGKE 117
T ST G+ T V++T T+ T+V MG E
Sbjct: 96 TVSTAGSETTTVSITGTETTMVSAMGSE 123
>gi|239740898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1542
Score = 28.1 bits (61), Expect = 2.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 90 TKSTGGAPTFNVTVTKTDKTLVLLMGKE 117
T ST G+ T V++T T+ T+V MG E
Sbjct: 117 TISTAGSETTTVSITGTETTMVSAMGSE 144
>gi|94721327 basonuclin 2 [Homo sapiens]
Length = 1099
Score = 28.1 bits (61), Expect = 2.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 75 RDSLLQDG--EFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVHGGLINKKC 128
RD L+D + SM T++T P F T D L+ M ++ + L+N C
Sbjct: 66 RDLTLRDSCTDNSMQFGTRTTTAEPGFMGTWQNADTNLLFRMSQQAIRCTLVNCTC 121
>gi|194272183 G protein-coupled receptor 124 [Homo sapiens]
Length = 1338
Score = 27.3 bits (59), Expect = 4.2
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 19 DAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFYVNGLTLGGQKCSVIRDSL 78
D+ + ++SP + G+ +TP+E G D S+ ++ GQ+ S RDSL
Sbjct: 1228 DSYLGSSRNSPGAGLQLEGEPM--LTPSE-----GSDTSAAPLSEAGRAGQRRSASRDSL 1280
Query: 79 LQDGEF-------SMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVHGG 122
G S L S GAP K D V LMG E GG
Sbjct: 1281 KGGGALEKESHRRSYPLNAASLNGAPKGG----KYDD--VTLMGAEVASGG 1325
>gi|47419900 pregnancy specific beta-1-glycoprotein 4 isoform 2
[Homo sapiens]
Length = 326
Score = 27.3 bits (59), Expect = 4.2
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 58 SFYVNG-LTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTD 107
S+ +NG L GQK S+ + + G ++ +R +TG + ++TV +D
Sbjct: 272 SWTINGKFQLSGQKLSIPQITTKHSGLYACSVRNSATGKESSKSITVKVSD 322
>gi|42560235 pregnancy specific beta-1-glycoprotein 4 isoform 1
[Homo sapiens]
Length = 419
Score = 27.3 bits (59), Expect = 4.2
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 58 SFYVNG-LTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTD 107
S+ +NG L GQK S+ + + G ++ +R +TG + ++TV +D
Sbjct: 365 SWTINGKFQLSGQKLSIPQITTKHSGLYACSVRNSATGKESSKSITVKVSD 415
>gi|157388939 WD repeat domain, phosphoinositide interacting 1 [Homo
sapiens]
Length = 446
Score = 26.9 bits (58), Expect = 5.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 27 DSPSVWAAVPGKTFV---NITPAEVGVLVGKDRSSFYVNGLTLGGQK 70
+ PS W+ GK F+ N P +V ++ +DR +F L GQ+
Sbjct: 270 EEPSTWSGYMGKMFMAATNYLPTQVSDMMHQDR-AFATARLNFSGQR 315
>gi|194328712 pregnancy specific beta-1-glycoprotein 8 isoform c
[Homo sapiens]
Length = 297
Score = 26.6 bits (57), Expect = 7.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 58 SFYVNG-LTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTL 110
S+ +NG L GQK + + + G ++ +R +TG + ++TV +D TL
Sbjct: 243 SWTINGKFQLSGQKLFIPQITTKHSGLYACSVRNSATGKESSKSMTVKVSDWTL 296
>gi|194328710 pregnancy specific beta-1-glycoprotein 8 isoform b
[Homo sapiens]
Length = 419
Score = 26.6 bits (57), Expect = 7.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 58 SFYVNG-LTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTL 110
S+ +NG L GQK + + + G ++ +R +TG + ++TV +D TL
Sbjct: 365 SWTINGKFQLSGQKLFIPQITTKHSGLYACSVRNSATGKESSKSMTVKVSDWTL 418
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,410,161
Number of Sequences: 37866
Number of extensions: 217508
Number of successful extensions: 452
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 53
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.