Guide to the Human Genome
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Search of human proteins with 4759244

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]
         (44 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]               89   8e-19
gi|11056061 thymosin, beta 4 [Homo sapiens]                            83   4e-17
gi|34013530 thymosin-like 3 [Homo sapiens]                             81   2e-16
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ...    65   1e-11
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ...    65   1e-11
gi|167555119 thymosin beta15b [Homo sapiens]                           64   3e-11
gi|11496273 thymosin-like 8 [Homo sapiens]                             64   3e-11
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa...    63   4e-11
gi|10863895 thymosin, beta 10 [Homo sapiens]                           62   8e-11
gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]            47   3e-06
gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo ...    47   3e-06
gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo ...    47   3e-06
gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo sapiens]    38   0.002
gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo sapiens]    38   0.002
gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo sapiens]    38   0.002
gi|7662168 suppression of tumorigenicity 18 [Homo sapiens]             30   0.54 
gi|42734430 polymerase I and transcript release factor [Homo sap...    29   0.93 
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso...    28   1.2  
gi|13128860 histone deacetylase 1 [Homo sapiens]                       27   4.6  
gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo sa...    26   6.0  
gi|153945728 microtubule-associated protein 1B [Homo sapiens]          26   7.8  
gi|5453734 MAD4 [Homo sapiens]                                         26   7.8  
gi|18093112 ABT1-associated protein [Homo sapiens]                     26   7.8  

>gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]
          Length = 44

 Score = 89.0 bits (219), Expect = 8e-19
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44
          MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES
Sbjct: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44


>gi|11056061 thymosin, beta 4 [Homo sapiens]
          Length = 44

 Score = 83.2 bits (204), Expect = 4e-17
 Identities = 41/44 (93%), Positives = 42/44 (95%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44
          MSDKP MAEIEKFDKSKLKKTETQEKNPL SKETIEQE+QAGES
Sbjct: 1  MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES 44


>gi|34013530 thymosin-like 3 [Homo sapiens]
          Length = 44

 Score = 81.3 bits (199), Expect = 2e-16
 Identities = 40/44 (90%), Positives = 41/44 (93%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44
          MSDKP MAEIEKFDK KLKKTETQEKNPL SKETIEQE+QAGES
Sbjct: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44


>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
          sapiens]
          Length = 158

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 33/42 (78%), Positives = 34/42 (80%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAG 42
          MSDK  M EIEKF KSKLKKTE QEKNP  SKE IEQE+QAG
Sbjct: 1  MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 42


>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
          sapiens]
          Length = 158

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 33/42 (78%), Positives = 34/42 (80%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAG 42
          MSDK  M EIEKF KSKLKKTE QEKNP  SKE IEQE+QAG
Sbjct: 1  MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 42


>gi|167555119 thymosin beta15b [Homo sapiens]
          Length = 45

 Score = 63.5 bits (153), Expect = 3e-11
 Identities = 28/40 (70%), Positives = 36/40 (90%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQ 40
          MSDKP ++E+EKFD+SKLKKT T+EKN L SKETI+QE++
Sbjct: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40


>gi|11496273 thymosin-like 8 [Homo sapiens]
          Length = 45

 Score = 63.5 bits (153), Expect = 3e-11
 Identities = 28/40 (70%), Positives = 36/40 (90%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQ 40
          MSDKP ++E+EKFD+SKLKKT T+EKN L SKETI+QE++
Sbjct: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40


>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
           sapiens]
          Length = 281

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 32/41 (78%), Positives = 33/41 (80%)

Query: 2   SDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAG 42
           SDK  M EIEKF KSKLKKTE QEKNP  SKE IEQE+QAG
Sbjct: 125 SDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 165


>gi|10863895 thymosin, beta 10 [Homo sapiens]
          Length = 44

 Score = 62.4 bits (150), Expect = 8e-11
 Identities = 29/41 (70%), Positives = 35/41 (85%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQA 41
          M+DKP M EI  FDK+KLKKTETQEKN L +KETIEQE+++
Sbjct: 1  MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRS 41


>gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 45

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQ 40
          MS KP M+++ KFD+ KLKK   +EKN L  +ETI+QE++
Sbjct: 1  MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40


>gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo
          sapiens]
          Length = 45

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQ 40
          MS KP M+++ KFD+ KLKK   +EKN L  +ETI+QE++
Sbjct: 1  MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40


>gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo
          sapiens]
          Length = 45

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQ 40
          MS KP M+++ KFD+ KLKK   +EKN L  +ETI+QE++
Sbjct: 1  MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40


>gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo
          sapiens]
          Length = 43

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQER 39
          M+ K  + EI   DK+KLK TE Q KN L +KET EQE+
Sbjct: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38


>gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo
          sapiens]
          Length = 43

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQER 39
          M+ K  + EI   DK+KLK TE Q KN L +KET EQE+
Sbjct: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38


>gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo
          sapiens]
          Length = 43

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQER 39
          M+ K  + EI   DK+KLK TE Q KN L +KET EQE+
Sbjct: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38


>gi|7662168 suppression of tumorigenicity 18 [Homo sapiens]
          Length = 1047

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 1   MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44
           + D+ G      + K+  K  E +EK+P+SS E +E+++  GE+
Sbjct: 660 LCDQEGWDTPINYSKTHGKTEEEKEKDPVSSLENLEEKKFPGEA 703


>gi|42734430 polymerase I and transcript release factor [Homo
           sapiens]
          Length = 390

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 11  EKFDKSKLKKTETQEKNPLSSKETIEQERQAGE 43
           EK +K+K++  E  EK  L +KE +E+ R   E
Sbjct: 239 EKMEKTKVRTRENLEKTRLKTKENLEKTRHTLE 271


>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
           isoform 2 [Homo sapiens]
          Length = 470

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 13/44 (29%), Positives = 25/44 (56%)

Query: 1   MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44
           + D+P +  ++K +K   K+ + +EK     KE +  ER +G+S
Sbjct: 262 LKDEPKIKLLKKPEKGDEKELDKREKAKKLDKENLSDERASGQS 305


>gi|13128860 histone deacetylase 1 [Homo sapiens]
          Length = 482

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 6   GMAEIEKFDKSKLKKTETQ-EKNPLSSKETIEQERQAGE 43
           G      F K+K  KTE + EK+P   KE  E+E+   E
Sbjct: 430 GRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEE 468


>gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo
           sapiens]
          Length = 184

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 3   DKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAG 42
           +K  +A  E+  K + K+ + +EK  L+ K  +EQ++Q G
Sbjct: 114 EKNKIAAEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEG 153


>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
          Length = 2468

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 3   DKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQE 38
           +KP   E++K  K ++KK E +E      KET  +E
Sbjct: 673 EKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKE 708


>gi|5453734 MAD4 [Homo sapiens]
          Length = 209

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 15  KSKLKKTETQEKNPLSSKETIEQERQ 40
           K  +KK E Q++  LS KE ++QE +
Sbjct: 99  KVHIKKLEEQDRRALSIKEQLQQEHR 124


>gi|18093112 ABT1-associated protein [Homo sapiens]
          Length = 851

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)

Query: 15  KSKLKKTETQEKNPLSSKETIEQERQ 40
           + K+KK +TQ K  + SK  +E++++
Sbjct: 91  QKKIKKKKTQTKKEIDSKNLVEKKKE 116


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.294    0.114    0.281 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,578,237
Number of Sequences: 37866
Number of extensions: 40047
Number of successful extensions: 178
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 24
length of query: 44
length of database: 18,247,518
effective HSP length: 18
effective length of query: 26
effective length of database: 17,565,930
effective search space: 456714180
effective search space used: 456714180
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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