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Search of human proteins with 4759244
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]
(44 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens] 89 8e-19
gi|11056061 thymosin, beta 4 [Homo sapiens] 83 4e-17
gi|34013530 thymosin-like 3 [Homo sapiens] 81 2e-16
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ... 65 1e-11
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ... 65 1e-11
gi|167555119 thymosin beta15b [Homo sapiens] 64 3e-11
gi|11496273 thymosin-like 8 [Homo sapiens] 64 3e-11
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa... 63 4e-11
gi|10863895 thymosin, beta 10 [Homo sapiens] 62 8e-11
gi|239754119 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-06
gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo ... 47 3e-06
gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo ... 47 3e-06
gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 38 0.002
gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 38 0.002
gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 38 0.002
gi|7662168 suppression of tumorigenicity 18 [Homo sapiens] 30 0.54
gi|42734430 polymerase I and transcript release factor [Homo sap... 29 0.93
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso... 28 1.2
gi|13128860 histone deacetylase 1 [Homo sapiens] 27 4.6
gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo sa... 26 6.0
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 26 7.8
gi|5453734 MAD4 [Homo sapiens] 26 7.8
gi|18093112 ABT1-associated protein [Homo sapiens] 26 7.8
>gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]
Length = 44
Score = 89.0 bits (219), Expect = 8e-19
Identities = 44/44 (100%), Positives = 44/44 (100%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44
MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES
Sbjct: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44
>gi|11056061 thymosin, beta 4 [Homo sapiens]
Length = 44
Score = 83.2 bits (204), Expect = 4e-17
Identities = 41/44 (93%), Positives = 42/44 (95%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44
MSDKP MAEIEKFDKSKLKKTETQEKNPL SKETIEQE+QAGES
Sbjct: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES 44
>gi|34013530 thymosin-like 3 [Homo sapiens]
Length = 44
Score = 81.3 bits (199), Expect = 2e-16
Identities = 40/44 (90%), Positives = 41/44 (93%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44
MSDKP MAEIEKFDK KLKKTETQEKNPL SKETIEQE+QAGES
Sbjct: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
sapiens]
Length = 158
Score = 65.1 bits (157), Expect = 1e-11
Identities = 33/42 (78%), Positives = 34/42 (80%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAG 42
MSDK M EIEKF KSKLKKTE QEKNP SKE IEQE+QAG
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 42
>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
sapiens]
Length = 158
Score = 65.1 bits (157), Expect = 1e-11
Identities = 33/42 (78%), Positives = 34/42 (80%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAG 42
MSDK M EIEKF KSKLKKTE QEKNP SKE IEQE+QAG
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 42
>gi|167555119 thymosin beta15b [Homo sapiens]
Length = 45
Score = 63.5 bits (153), Expect = 3e-11
Identities = 28/40 (70%), Positives = 36/40 (90%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQ 40
MSDKP ++E+EKFD+SKLKKT T+EKN L SKETI+QE++
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
>gi|11496273 thymosin-like 8 [Homo sapiens]
Length = 45
Score = 63.5 bits (153), Expect = 3e-11
Identities = 28/40 (70%), Positives = 36/40 (90%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQ 40
MSDKP ++E+EKFD+SKLKKT T+EKN L SKETI+QE++
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
sapiens]
Length = 281
Score = 63.2 bits (152), Expect = 4e-11
Identities = 32/41 (78%), Positives = 33/41 (80%)
Query: 2 SDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAG 42
SDK M EIEKF KSKLKKTE QEKNP SKE IEQE+QAG
Sbjct: 125 SDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 165
>gi|10863895 thymosin, beta 10 [Homo sapiens]
Length = 44
Score = 62.4 bits (150), Expect = 8e-11
Identities = 29/41 (70%), Positives = 35/41 (85%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQA 41
M+DKP M EI FDK+KLKKTETQEKN L +KETIEQE+++
Sbjct: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRS 41
>gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 45
Score = 47.0 bits (110), Expect = 3e-06
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQ 40
MS KP M+++ KFD+ KLKK +EKN L +ETI+QE++
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
>gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo
sapiens]
Length = 45
Score = 47.0 bits (110), Expect = 3e-06
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQ 40
MS KP M+++ KFD+ KLKK +EKN L +ETI+QE++
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
>gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo
sapiens]
Length = 45
Score = 47.0 bits (110), Expect = 3e-06
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQ 40
MS KP M+++ KFD+ KLKK +EKN L +ETI+QE++
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
>gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQER 39
M+ K + EI DK+KLK TE Q KN L +KET EQE+
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
>gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQER 39
M+ K + EI DK+KLK TE Q KN L +KET EQE+
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
>gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQER 39
M+ K + EI DK+KLK TE Q KN L +KET EQE+
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
>gi|7662168 suppression of tumorigenicity 18 [Homo sapiens]
Length = 1047
Score = 29.6 bits (65), Expect = 0.54
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44
+ D+ G + K+ K E +EK+P+SS E +E+++ GE+
Sbjct: 660 LCDQEGWDTPINYSKTHGKTEEEKEKDPVSSLENLEEKKFPGEA 703
>gi|42734430 polymerase I and transcript release factor [Homo
sapiens]
Length = 390
Score = 28.9 bits (63), Expect = 0.93
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 11 EKFDKSKLKKTETQEKNPLSSKETIEQERQAGE 43
EK +K+K++ E EK L +KE +E+ R E
Sbjct: 239 EKMEKTKVRTRENLEKTRLKTKENLEKTRHTLE 271
>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
isoform 2 [Homo sapiens]
Length = 470
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44
+ D+P + ++K +K K+ + +EK KE + ER +G+S
Sbjct: 262 LKDEPKIKLLKKPEKGDEKELDKREKAKKLDKENLSDERASGQS 305
>gi|13128860 histone deacetylase 1 [Homo sapiens]
Length = 482
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 6 GMAEIEKFDKSKLKKTETQ-EKNPLSSKETIEQERQAGE 43
G F K+K KTE + EK+P KE E+E+ E
Sbjct: 430 GRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEE 468
>gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo
sapiens]
Length = 184
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 3 DKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAG 42
+K +A E+ K + K+ + +EK L+ K +EQ++Q G
Sbjct: 114 EKNKIAAEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEG 153
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 3 DKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQE 38
+KP E++K K ++KK E +E KET +E
Sbjct: 673 EKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKE 708
>gi|5453734 MAD4 [Homo sapiens]
Length = 209
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 15 KSKLKKTETQEKNPLSSKETIEQERQ 40
K +KK E Q++ LS KE ++QE +
Sbjct: 99 KVHIKKLEEQDRRALSIKEQLQQEHR 124
>gi|18093112 ABT1-associated protein [Homo sapiens]
Length = 851
Score = 25.8 bits (55), Expect = 7.8
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 15 KSKLKKTETQEKNPLSSKETIEQERQ 40
+ K+KK +TQ K + SK +E++++
Sbjct: 91 QKKIKKKKTQTKKEIDSKNLVEKKKE 116
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.294 0.114 0.281
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,578,237
Number of Sequences: 37866
Number of extensions: 40047
Number of successful extensions: 178
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 24
length of query: 44
length of database: 18,247,518
effective HSP length: 18
effective length of query: 26
effective length of database: 17,565,930
effective search space: 456714180
effective search space used: 456714180
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.