Guide to the Human Genome
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Name: CNTF Sequence: fasta or formatted (200aa) NCBI GI: 4758020
Description:

ciliary neurotrophic factor

Referenced in:

Interleukins and Their Receptors
Neurons
Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         15           2
 C cysteine            0.5          1           1
 D aspartate           5.0         10           1
 E glutamate           7.0         14           2
 F phenylalanine       3.5          7           1
 G glycine             5.0         10           2
 H histidine           5.0         10           1
 I isoleucine          6.0         12           1
 K lysine              4.5          9           2
 L leucine            13.0         26           3
 M methionine          2.5          5           1
 N asparagine          4.0          8           2
 P proline             3.5          7           1
 Q glutamine           6.0         12           2
 R arginine            6.0         12           2
 S serine              6.5         13           2
 T threonine           6.0         12           1
 V valine              4.0          8           1
 W tryptophan          2.0          4           1
 Y tyrosine            2.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ciliary neurotrophic factor 
OTC                   0.026   ornithine carbamoyltransferase precursor 
KIAA1772              0.016   KIAA1772 
KTN1                  0.016   kinectin 1 isoform b 
KTN1                  0.016   kinectin 1 isoform a 
KTN1                  0.016   kinectin 1 isoform c 
KTN1                  0.016   kinectin 1 isoform a 
ASB4                  0.016   ankyrin repeat and SOCS box-containing protein 4 isof...
ASB4                  0.016   ankyrin repeat and SOCS box-containing protein 4 iso...
CTF1                  0.010   cardiotrophin 1 isoform 2 
CTF1                  0.010   cardiotrophin 1 isoform 1 
ZNF594                0.010   zinc finger protein 594 
PDCD6IP               0.008   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.008   programmed cell death 6 interacting protein isoform ...
BTBD12                0.008   BTB (POZ) domain containing 12 
STX1A                 0.008   syntaxin 1A (brain) 
MMRN2                 0.005   multimerin 2 precursor 
AP1M2                 0.005   adaptor-related protein complex 1, mu 2 subunit [Homo...
DIP2B                 0.005   DIP2 disco-interacting protein 2 homolog B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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