Search of human proteins with 13129032

Search of human proteins with 13129032

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13129032 hypothetical protein LOC79025 [Homo sapiens]
         (318 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13129032 hypothetical protein LOC79025 [Homo sapiens]              645   0.0  
gi|117968345 up-regulated gene 4 isoform 2 [Homo sapiens]              30   2.8  
gi|117968347 up-regulated gene 4 isoform 1 [Homo sapiens]              30   2.8  
gi|117968328 up-regulated gene 4 isoform 3 [Homo sapiens]              30   2.8  
gi|5803221 WD repeat-containing protein 3 [Homo sapiens]               30   2.8  
gi|154354985 hook homolog 2 isoform 1 [Homo sapiens]                   30   3.7  
gi|22749129 RasGEF domain family, member 1B [Homo sapiens]             29   4.8  
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]          29   6.3  
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]         29   6.3  
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]         29   6.3  
gi|219842266 usherin isoform B [Homo sapiens]                          29   6.3  
gi|238231392 dedicator of cytokinesis 8 [Homo sapiens]                 29   6.3  
gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...    29   6.3  
gi|189011544 ubiquitously transcribed tetratricopeptide repeat, ...    28   8.2  
gi|24430212 interleukin 23 receptor precursor [Homo sapiens]           28   8.2  
gi|156104903 myomesin 2 [Homo sapiens]                                 28   8.2  
gi|217330592 LGP1 homolog isoform 2 [Homo sapiens]                     28   8.2  

>gi|13129032 hypothetical protein LOC79025 [Homo sapiens]
          Length = 318

 Score =  645 bits (1664), Expect = 0.0
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 1   MSTHVAGLGLDKMKLGNPQSFLDQEEADDQQLLEPEAWKTYTERRNALREFLTSDLSPHL 60
           MSTHVAGLGLDKMKLGNPQSFLDQEEADDQQLLEPEAWKTYTERRNALREFLTSDLSPHL
Sbjct: 1   MSTHVAGLGLDKMKLGNPQSFLDQEEADDQQLLEPEAWKTYTERRNALREFLTSDLSPHL 60

Query: 61  LKRHHARMQLLRKCSYYIEVLPKHLALGDQNPLVLPSALFQLIDPWKFQRMKKVGTAQTK 120
           LKRHHARMQLLRKCSYYIEVLPKHLALGDQNPLVLPSALFQLIDPWKFQRMKKVGTAQTK
Sbjct: 61  LKRHHARMQLLRKCSYYIEVLPKHLALGDQNPLVLPSALFQLIDPWKFQRMKKVGTAQTK 120

Query: 121 IQLLLLGDLLEQLDHGRAELDALLRSPDPRPFLADWALVERRLADVSAVMDSFLTMMVPG 180
           IQLLLLGDLLEQLDHGRAELDALLRSPDPRPFLADWALVERRLADVSAVMDSFLTMMVPG
Sbjct: 121 IQLLLLGDLLEQLDHGRAELDALLRSPDPRPFLADWALVERRLADVSAVMDSFLTMMVPG 180

Query: 181 RLHVKHRLVSDVSATKIPHIWLMLSTKMPVVFDRKASAAHQDWARLRWFVTIQPATSEQY 240
           RLHVKHRLVSDVSATKIPHIWLMLSTKMPVVFDRKASAAHQDWARLRWFVTIQPATSEQY
Sbjct: 181 RLHVKHRLVSDVSATKIPHIWLMLSTKMPVVFDRKASAAHQDWARLRWFVTIQPATSEQY 240

Query: 241 ELRFRLLDPRTQQECAQCGVIPVAACTFDVRNLLPNRSYKFTIKRAETSTLVYEPWRDSL 300
           ELRFRLLDPRTQQECAQCGVIPVAACTFDVRNLLPNRSYKFTIKRAETSTLVYEPWRDSL
Sbjct: 241 ELRFRLLDPRTQQECAQCGVIPVAACTFDVRNLLPNRSYKFTIKRAETSTLVYEPWRDSL 300

Query: 301 TLHTKPEPLEGPALSHSV 318
           TLHTKPEPLEGPALSHSV
Sbjct: 301 TLHTKPEPLEGPALSHSV 318


>gi|117968345 up-regulated gene 4 isoform 2 [Homo sapiens]
          Length = 888

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 214 RKASAAHQDWARLRWFVTIQPATSEQYELRFRLLDPRTQQ 253
           RKA+   +++ +L+W   + P    + ELR RLL+ R QQ
Sbjct: 459 RKAAQVEKEFCQLQW--AVDPPEKHRAELRRRLLELRMQQ 496


>gi|117968347 up-regulated gene 4 isoform 1 [Homo sapiens]
          Length = 922

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 214 RKASAAHQDWARLRWFVTIQPATSEQYELRFRLLDPRTQQ 253
           RKA+   +++ +L+W   + P    + ELR RLL+ R QQ
Sbjct: 493 RKAAQVEKEFCQLQW--AVDPPEKHRAELRRRLLELRMQQ 530


>gi|117968328 up-regulated gene 4 isoform 3 [Homo sapiens]
          Length = 931

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 214 RKASAAHQDWARLRWFVTIQPATSEQYELRFRLLDPRTQQ 253
           RKA+   +++ +L+W   + P    + ELR RLL+ R QQ
Sbjct: 502 RKAAQVEKEFCQLQW--AVDPPEKHRAELRRRLLELRMQQ 539


>gi|5803221 WD repeat-containing protein 3 [Homo sapiens]
          Length = 943

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 110 RMKKVGTAQTKIQL--LLLGDLLEQLDHGRAELDALLRSPDPRPFLADWALVERRLADVS 167
           R   +GT   K+QL  L  G+LLE +D     L ++  SPD R F+   A    +  D  
Sbjct: 467 RQVVIGTKTGKLQLYDLASGNLLETIDAHDGALWSMSLSPDQRGFVTGGADKSVKFWDFE 526

Query: 168 AVMDSFLTMMVPGRLHVK 185
            V D   T     RL VK
Sbjct: 527 LVKDENSTQK---RLSVK 541


>gi|154354985 hook homolog 2 isoform 1 [Homo sapiens]
          Length = 719

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 9   GLDKMKLGNPQ--SFLDQEEADDQQLLEPEAWKTYTERRNALREFLTSDLSPHLLKRHHA 66
           GL+     N Q  S L  +  D Q+ L+ +  KT     +A+   L   L  HL K H A
Sbjct: 498 GLETQHRLNQQQLSELRAQVEDLQKALQEQGGKT----EDAISILLKRKLEEHLQKLHEA 553

Query: 67  RMQLLRKCSYYIEVLP 82
            ++L RK  Y  E+ P
Sbjct: 554 DLELQRKREYIEELEP 569


>gi|22749129 RasGEF domain family, member 1B [Homo sapiens]
          Length = 473

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 19  QSFLDQEEADDQQLLEPEAWKT-----YTERRNALREFLTSDLSPHLLKRHHARMQLLRK 73
           Q+F+ ++  D+ +    E  KT     Y E  N L   + +++   + K+H ARM     
Sbjct: 231 QAFVQKDPLDNDKSCYSERKKTRNLEAYVEWFNRLSYLVATEICMPVKKKHRARM----- 285

Query: 74  CSYYIEVLPKHLALGDQNPLV 94
             Y+I+V  +   +G+ N L+
Sbjct: 286 IEYFIDVARECFNIGNFNSLM 306


>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
          Length = 1273

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 14/61 (22%)

Query: 22   LDQEEADDQQLLEPEAWKTYTERRNALREFLTSDLSPHLLKRHHAR--------MQLLRK 73
            LD EE +    +E E W  Y ER      ++ SD +   L+ H A+        ++ +RK
Sbjct: 1082 LDTEEENSDDPVEAERWSDYVER------YMNSDTTSPELREHLAQKPVFLPRNLRRIRK 1135

Query: 74   C 74
            C
Sbjct: 1136 C 1136


>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
          Length = 1273

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 14/61 (22%)

Query: 22   LDQEEADDQQLLEPEAWKTYTERRNALREFLTSDLSPHLLKRHHAR--------MQLLRK 73
            LD EE +    +E E W  Y ER      ++ SD +   L+ H A+        ++ +RK
Sbjct: 1082 LDTEEENSDDPVEAERWSDYVER------YMNSDTTSPELREHLAQKPVFLPRNLRRIRK 1135

Query: 74   C 74
            C
Sbjct: 1136 C 1136


>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
          Length = 1273

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 14/61 (22%)

Query: 22   LDQEEADDQQLLEPEAWKTYTERRNALREFLTSDLSPHLLKRHHAR--------MQLLRK 73
            LD EE +    +E E W  Y ER      ++ SD +   L+ H A+        ++ +RK
Sbjct: 1082 LDTEEENSDDPVEAERWSDYVER------YMNSDTTSPELREHLAQKPVFLPRNLRRIRK 1135

Query: 74   C 74
            C
Sbjct: 1136 C 1136


>gi|219842266 usherin isoform B [Homo sapiens]
          Length = 5202

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 262  PVAACTFDVRNLLPNRSYKFTIKRAETSTLVYEPWRDSLTLHTKPEPLEGPAL 314
            P A+ +++V +L P   Y F +  +      +  W   +T   KP P+  P L
Sbjct: 2489 PSASLSYEVSDLQPYTEYMFRLVASNGFGSAHSSWIPFMTAEDKPGPVVPPIL 2541


>gi|238231392 dedicator of cytokinesis 8 [Homo sapiens]
          Length = 2099

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 201 WLMLSTK---MPVVFDRKASAAHQDWARLRWFVTIQPATSEQYELRFRLLDPRTQQECAQ 257
           WL+++ K    P +   K + + +D+ +     T +  T E  E   +         C  
Sbjct: 129 WLIVNRKNQGSPEICGFKKTGSRKDFHKTLPKQTFESETLECSEPAAQAGPRHLNVLCDV 188

Query: 258 CGVIPVAACTFDVRNLLPNR 277
            G  PV AC FD+R+L P++
Sbjct: 189 SGKGPVTACDFDLRSLQPDK 208


>gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
           3 [Homo sapiens]
          Length = 1544

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 219 AHQDWARLRWFVTIQPATSE---QYELRFRLLDPRTQQECAQCG 259
           A    AR  W   +Q A +E    YE+  ++   R  ++CA CG
Sbjct: 465 AESGGARQSWAAALQEAVTETLSDYEVAEKIWSNRANRQCADCG 508


>gi|189011544 ubiquitously transcribed tetratricopeptide repeat, X
           chromosome [Homo sapiens]
          Length = 1401

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 47  ALREFLTSDLSPHLLKRHHARMQLLRKCSYYIEVLPKH--LALGDQNPLVLPSALFQLID 104
           A +E L  D S    K  H R+ L+ K +   E   KH  LAL D NP  L +A  Q   
Sbjct: 152 AFQEVLYVDPSFCRAKEIHLRLGLMFKVNTDYESSLKHFQLALVDCNPCTLSNAEIQFHI 211

Query: 105 PWKFQRMKKVGTAQTKIQLLL 125
              ++  +K  +A+   + LL
Sbjct: 212 AHLYETQRKYHSAKEAYEQLL 232


>gi|24430212 interleukin 23 receptor precursor [Homo sapiens]
          Length = 629

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 273 LLPNRSYKFTIKRAETSTLVYEPWRDSLTLHTKPE 307
           L PN  Y F ++  ET    ++PW  SL  H  PE
Sbjct: 284 LEPNIKYVFQVRCQETGKRYWQPW-SSLFFHKTPE 317


>gi|156104903 myomesin 2 [Homo sapiens]
          Length = 1465

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 257 QCGVIPVAACTFDVRNLLPNRSYKFTIKRAETSTLVYEPWRDS 299
           QC   PV  C + V  L   RSY F + RA  S  +  P R S
Sbjct: 431 QCNDAPVKICKYPVTGLFEGRSYIFRV-RAVNSAGISRPSRVS 472


>gi|217330592 LGP1 homolog isoform 2 [Homo sapiens]
          Length = 491

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 33  LEPEAWKTYTERRNALREFLTSDLSPHLLKRHHARMQLLRKCSYYIEVLPKHLALGDQNP 92
           LE      +  ++ ALR  L     PH   R    +   R      +  P+ LA G    
Sbjct: 55  LEQSTLHVHQSQQQALRWCLQGAQRPHCSLRRSTDISTFRNHLPLTKAYPEVLAQGRTAR 114

Query: 93  LVLPSALFQLIDPWKFQRMKKVGTAQTKIQLLLLGDLL 130
           + L S   + + PW    + +VGT  TK    LL D L
Sbjct: 115 VTLTSPWPRPL-PWPGNTLGQVGTPGTKDPRALLLDAL 151


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,488,669
Number of Sequences: 37866
Number of extensions: 523146
Number of successful extensions: 1183
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 18
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.