Guide to the Human Genome
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Name: C20orf195 Sequence: fasta or formatted (318aa) NCBI GI: 13129032
Description:

hypothetical protein LOC79025

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         25           2
 C cysteine            1.3          4           1
 D aspartate           6.3         20           2
 E glutamate           5.3         17           2
 F phenylalanine       3.5         11           1
 G glycine             3.1         10           1
 H histidine           3.8         12           2
 I isoleucine          2.5          8           1
 K lysine              5.3         17           2
 L leucine            15.4         49           4
 M methionine          2.8          9           2
 N asparagine          1.6          5           1
 P proline             6.6         21           1
 Q glutamine           5.3         17           2
 R arginine            7.5         24           2
 S serine              6.0         19           1
 T threonine           5.7         18           1
 V valine              6.0         19           2
 W tryptophan          2.2          7           1
 Y tyrosine            1.9          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79025 
URG4                  0.008   up-regulated gene 4 isoform 2 
URG4                  0.008   up-regulated gene 4 isoform 1 
URG4                  0.008   up-regulated gene 4 isoform 3 
WDR3                  0.008   WD repeat-containing protein 3 
HOOK2                 0.008   hook homolog 2 isoform 1 
RASGEF1B              0.006   RasGEF domain family, member 1B 
SIN3A                 0.006   transcriptional co-repressor Sin3A 
SIN3A                 0.006   transcriptional co-repressor Sin3A 
SIN3A                 0.006   transcriptional co-repressor Sin3A 
USH2A                 0.006   usherin isoform B 
DOCK8                 0.006   dedicator of cytokinesis 8 
ARAP3                 0.006   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
KDM6A                 0.005   ubiquitously transcribed tetratricopeptide repeat, ...
IL23R                 0.005   interleukin 23 receptor precursor 
MYOM2                 0.005   myomesin 2 
GHDC                  0.005   LGP1 homolog isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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