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Search of human proteins with 109138575
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109138575 protein tyrosine phosphatase, non-receptor type
20A isoform 10 [Homo sapiens]
(64 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|108802615 protein tyrosine phosphatase, non-receptor type 20 ... 140 2e-34
gi|108802621 protein tyrosine phosphatase, non-receptor type 20 ... 140 2e-34
gi|109138575 protein tyrosine phosphatase, non-receptor type 20A... 140 2e-34
gi|109138569 protein tyrosine phosphatase, non-receptor type 20A... 140 2e-34
gi|109138571 protein tyrosine phosphatase, non-receptor type 20A... 75 1e-14
gi|109138567 protein tyrosine phosphatase, non-receptor type 20A... 75 1e-14
gi|109138559 protein tyrosine phosphatase, non-receptor type 20A... 75 1e-14
gi|108802619 protein tyrosine phosphatase, non-receptor type 20 ... 75 1e-14
gi|108802613 protein tyrosine phosphatase, non-receptor type 20 ... 75 1e-14
gi|45243554 protein tyrosine phosphatase, non-receptor type 20 i... 75 1e-14
gi|108802609 protein tyrosine phosphatase, non-receptor type 20 ... 70 3e-13
gi|109138573 protein tyrosine phosphatase, non-receptor type 20A... 70 3e-13
gi|109138563 protein tyrosine phosphatase, non-receptor type 20A... 70 3e-13
gi|109138561 protein tyrosine phosphatase, non-receptor type 20A... 70 3e-13
gi|109138557 protein tyrosine phosphatase, non-receptor type 20A... 70 3e-13
gi|108802617 protein tyrosine phosphatase, non-receptor type 20 ... 70 3e-13
gi|108802607 protein tyrosine phosphatase, non-receptor type 20 ... 70 3e-13
gi|108802604 protein tyrosine phosphatase, non-receptor type 20 ... 70 3e-13
gi|31543980 zinc finger protein 263 [Homo sapiens] 27 3.5
gi|116734706 interferon regulatory factor 2 binding protein 2 is... 27 4.6
gi|116734704 interferon regulatory factor 2 binding protein 2 is... 27 4.6
gi|194097477 neuronal PAS domain protein 4 [Homo sapiens] 26 6.0
gi|11386181 H2.0-like homeobox [Homo sapiens] 26 7.8
gi|6912284 carbonic anhydrase XIV precursor [Homo sapiens] 26 7.8
gi|9966885 tumor endothelial marker 1 precursor [Homo sapiens] 26 7.8
gi|156627557 zinc finger protein 554 [Homo sapiens] 26 7.8
>gi|108802615 protein tyrosine phosphatase, non-receptor type 20
isoform 7 [Homo sapiens]
Length = 136
Score = 140 bits (353), Expect = 2e-34
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL 60
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL
Sbjct: 73 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL 132
Query: 61 RYCA 64
RYCA
Sbjct: 133 RYCA 136
>gi|108802621 protein tyrosine phosphatase, non-receptor type 20
isoform 10 [Homo sapiens]
Length = 64
Score = 140 bits (353), Expect = 2e-34
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL 60
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL
Sbjct: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL 60
Query: 61 RYCA 64
RYCA
Sbjct: 61 RYCA 64
>gi|109138575 protein tyrosine phosphatase, non-receptor type 20A
isoform 10 [Homo sapiens]
Length = 64
Score = 140 bits (353), Expect = 2e-34
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL 60
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL
Sbjct: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL 60
Query: 61 RYCA 64
RYCA
Sbjct: 61 RYCA 64
>gi|109138569 protein tyrosine phosphatase, non-receptor type 20A
isoform 7 [Homo sapiens]
Length = 136
Score = 140 bits (353), Expect = 2e-34
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL 60
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL
Sbjct: 73 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL 132
Query: 61 RYCA 64
RYCA
Sbjct: 133 RYCA 136
>gi|109138571 protein tyrosine phosphatase, non-receptor type 20A
isoform 9 [Homo sapiens]
Length = 145
Score = 74.7 bits (182), Expect = 1e-14
Identities = 32/35 (91%), Positives = 33/35 (94%)
Query: 30 LLSVQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA 64
+L QHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
Sbjct: 111 ILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA 145
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
>gi|109138567 protein tyrosine phosphatase, non-receptor type 20A
isoform 6 [Homo sapiens]
Length = 217
Score = 74.7 bits (182), Expect = 1e-14
Identities = 32/35 (91%), Positives = 33/35 (94%)
Query: 30 LLSVQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA 64
+L QHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
Sbjct: 183 ILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA 217
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 73 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 104
>gi|109138559 protein tyrosine phosphatase, non-receptor type 20A
isoform 2 [Homo sapiens]
Length = 226
Score = 74.7 bits (182), Expect = 1e-14
Identities = 32/35 (91%), Positives = 33/35 (94%)
Query: 30 LLSVQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA 64
+L QHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
Sbjct: 192 ILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA 226
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 82 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 113
>gi|108802619 protein tyrosine phosphatase, non-receptor type 20
isoform 9 [Homo sapiens]
Length = 145
Score = 74.7 bits (182), Expect = 1e-14
Identities = 32/35 (91%), Positives = 33/35 (94%)
Query: 30 LLSVQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA 64
+L QHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
Sbjct: 111 ILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA 145
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
>gi|108802613 protein tyrosine phosphatase, non-receptor type 20
isoform 6 [Homo sapiens]
Length = 217
Score = 74.7 bits (182), Expect = 1e-14
Identities = 32/35 (91%), Positives = 33/35 (94%)
Query: 30 LLSVQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA 64
+L QHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
Sbjct: 183 ILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA 217
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 73 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 104
>gi|45243554 protein tyrosine phosphatase, non-receptor type 20
isoform 2 [Homo sapiens]
Length = 226
Score = 74.7 bits (182), Expect = 1e-14
Identities = 32/35 (91%), Positives = 33/35 (94%)
Query: 30 LLSVQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA 64
+L QHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
Sbjct: 192 ILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA 226
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 82 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 113
>gi|108802609 protein tyrosine phosphatase, non-receptor type 20
isoform 4 [Homo sapiens]
Length = 269
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 73 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 104
>gi|109138573 protein tyrosine phosphatase, non-receptor type 20A
isoform 8 [Homo sapiens]
Length = 339
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
>gi|109138563 protein tyrosine phosphatase, non-receptor type 20A
isoform 4 [Homo sapiens]
Length = 269
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 73 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 104
>gi|109138561 protein tyrosine phosphatase, non-receptor type 20A
isoform 3 [Homo sapiens]
Length = 411
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 73 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 104
>gi|109138557 protein tyrosine phosphatase, non-receptor type 20A
isoform 1 [Homo sapiens]
Length = 420
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 82 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 113
>gi|108802617 protein tyrosine phosphatase, non-receptor type 20
isoform 8 [Homo sapiens]
Length = 339
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
>gi|108802607 protein tyrosine phosphatase, non-receptor type 20
isoform 3 [Homo sapiens]
Length = 411
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 73 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 104
>gi|108802604 protein tyrosine phosphatase, non-receptor type 20
isoform 1 [Homo sapiens]
Length = 420
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 32
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS
Sbjct: 82 MWTARGPFRRDRWSSEDEEAAGPSQALSPLLS 113
>gi|31543980 zinc finger protein 263 [Homo sapiens]
Length = 683
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 8 FRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERT 45
FRR R+ +EAAGP +ALS L + HG+ P RT
Sbjct: 44 FRRFRF----QEAAGPREALSRLQEL-CHGWLRPEMRT 76
>gi|116734706 interferon regulatory factor 2 binding protein 2
isoform B [Homo sapiens]
Length = 571
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 10 RDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNE 43
+ R S E + P LL++ HG+SGP E
Sbjct: 289 KSRGSGEQDWVNRPKTVRDTLLALHQHGHSGPFE 322
>gi|116734704 interferon regulatory factor 2 binding protein 2
isoform A [Homo sapiens]
Length = 587
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 10 RDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNE 43
+ R S E + P LL++ HG+SGP E
Sbjct: 289 KSRGSGEQDWVNRPKTVRDTLLALHQHGHSGPFE 322
>gi|194097477 neuronal PAS domain protein 4 [Homo sapiens]
Length = 802
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 7 PFRRDRWSSEDEEAAGPSQALSPL--LSVQHHGY 38
P + W S D EA GP A SP LS + H +
Sbjct: 720 PDPSEEWGSGDPEAEGPGGAPSPCNNLSPEDHSF 753
>gi|11386181 H2.0-like homeobox [Homo sapiens]
Length = 488
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 4 ARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHH 36
AR P R + E AG Q LSPL + HH
Sbjct: 89 ARSPLRPTPVVAPSEVPAGFPQRLSPLSAAYHH 121
>gi|6912284 carbonic anhydrase XIV precursor [Homo sapiens]
Length = 337
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 2 WTARGPFRRDRWSSEDEEAAGPSQA----------LSP-LLSVQHHGYSGPNERTTFWHG 50
WT GP +D W + E +Q+ P L ++Q HGY P H
Sbjct: 22 WTYEGPHGQDHWPASYPECGNNAQSPIDIQTDSVTFDPDLPALQPHGYDQPGTEPLDLHN 81
Query: 51 S 51
+
Sbjct: 82 N 82
>gi|9966885 tumor endothelial marker 1 precursor [Homo sapiens]
Length = 757
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 2 WTARGP-FRRDRWSSEDEEAAGPS 24
W A GP +D W++E A GPS
Sbjct: 9 WAAAGPTLGQDPWAAEPRAACGPS 32
>gi|156627557 zinc finger protein 554 [Homo sapiens]
Length = 538
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 13 WSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNE 53
W ++ P LS S+ H + P E+ T WHG E
Sbjct: 186 WKQLEDSHEDPQGLLSQKASL--HVVAVPQEKATAWHGFGE 224
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,907,099
Number of Sequences: 37866
Number of extensions: 100296
Number of successful extensions: 327
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 32
length of query: 64
length of database: 18,247,518
effective HSP length: 37
effective length of query: 27
effective length of database: 16,846,476
effective search space: 454854852
effective search space used: 454854852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.