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Search of human proteins with 4557471
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557471 adaptor-related protein complex 1, sigma 1 subunit
[Homo sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4557471 adaptor-related protein complex 1, sigma 1 subunit [H... 316 6e-87
gi|22027655 adaptor-related protein complex 1 sigma 2 subunit [H... 283 4e-77
gi|88703051 adaptor-related protein complex 1, sigma 3 subunit [... 229 6e-61
gi|70906430 adaptor-related protein complex 2, sigma 1 subunit i... 144 2e-35
gi|189409104 adaptor-related protein complex 4, sigma 1 subunit ... 116 7e-27
gi|5031581 adaptor-related protein complex 3, sigma 2 subunit [H... 111 2e-25
gi|4502861 adaptor-related protein complex 3, sigma 1 subunit [H... 108 2e-24
gi|21361394 adaptor-related protein complex 4, sigma 1 subunit i... 92 2e-19
gi|11038643 adaptor-related protein complex 2, sigma 1 subunit i... 83 1e-16
gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Hom... 38 0.003
gi|68799814 adaptor-related protein complex 2, mu 1 subunit isof... 38 0.004
gi|14917109 adaptor-related protein complex 2, mu 1 subunit isof... 35 0.020
gi|6912240 adaptor-related protein complex 3, mu 1 subunit [Homo... 35 0.027
gi|46370095 adaptor-related protein complex 3, mu 1 subunit [Hom... 35 0.027
gi|197209857 adaptor-related protein complex 3, mu 2 subunit [Ho... 35 0.027
gi|5803000 adaptor-related protein complex 3, mu 2 subunit [Homo... 35 0.027
gi|9506797 adaptor-related protein complex 1, mu 2 subunit [Homo... 35 0.027
gi|7706337 coatomer protein complex, subunit zeta 1 [Homo sapiens] 35 0.035
gi|194473724 adaptor-related protein complex 1, mu 1 subunit iso... 32 0.29
gi|14210504 adaptor-related protein complex 1, mu 1 subunit isof... 32 0.29
gi|11863154 archain isoform 1 [Homo sapiens] 30 1.1
gi|64085161 thyroid stimulating hormone receptor isoform 2 precu... 28 3.3
gi|4758638 peroxiredoxin 6 [Homo sapiens] 28 3.3
gi|6912626 fascin 2 isoform 1 [Homo sapiens] 28 3.3
gi|199560536 hypothetical protein LOC283643 isoform 4 [Homo sapi... 28 4.3
gi|199560438 hypothetical protein LOC283643 isoform 2 [Homo sapi... 28 4.3
gi|239757058 PREDICTED: hypothetical protein [Homo sapiens] 27 7.3
gi|110347443 TATA element modulatory factor 1 [Homo sapiens] 27 7.3
gi|196114970 protein tyrosine phosphatase, non-receptor type 12 ... 27 9.5
gi|196114967 protein tyrosine phosphatase, non-receptor type 12 ... 27 9.5
>gi|4557471 adaptor-related protein complex 1, sigma 1 subunit [Homo
sapiens]
Length = 158
Score = 316 bits (809), Expect = 6e-87
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
Query: 121 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA 158
GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA 158
>gi|22027655 adaptor-related protein complex 1 sigma 2 subunit [Homo
sapiens]
Length = 157
Score = 283 bits (724), Expect = 4e-77
Identities = 137/156 (87%), Positives = 150/156 (96%)
Query: 2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61
M+FMLLFSRQGKLRLQKWY+ SDKE+KK+ REL+Q VLARKPKMCSFLEWRDLK+VYKR
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 62 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121
YASLYFCCAIE QDNELITLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL+GG
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 122 DVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGL 157
+VQ+TSKK+VLKAIEQADLLQEE E+PRSVLEE+GL
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEEAETPRSVLEEIGL 156
>gi|88703051 adaptor-related protein complex 1, sigma 3 subunit
[Homo sapiens]
Length = 154
Score = 229 bits (585), Expect = 6e-61
Identities = 104/146 (71%), Positives = 131/146 (89%)
Query: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
M+ F+LLFSRQGKLRLQKWY+ DKERKK+ RE++Q++L+R + SF++W++LK+VYK
Sbjct: 1 MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYK 60
Query: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
RYASLYFCCAIE QDNEL+TLE++HRYVELLDKYFG+VCELDIIFNFEKAYFILDEF++G
Sbjct: 61 RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120
Query: 121 GDVQDTSKKSVLKAIEQADLLQEEDE 146
G++Q+TSKK +KAIE +D+LQE E
Sbjct: 121 GEIQETSKKIAVKAIEDSDMLQETME 146
>gi|70906430 adaptor-related protein complex 2, sigma 1 subunit
isoform AP17 [Homo sapiens]
Length = 142
Score = 144 bits (364), Expect = 2e-35
Identities = 62/135 (45%), Positives = 97/135 (71%)
Query: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
M+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F+E+R+ K++Y+
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE +
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 121 GDVQDTSKKSVLKAI 135
G++++TS+ VLK +
Sbjct: 121 GEIRETSQTKVLKQL 135
>gi|189409104 adaptor-related protein complex 4, sigma 1 subunit
isoform 2 [Homo sapiens]
Length = 144
Score = 116 bits (291), Expect = 7e-27
Identities = 51/143 (35%), Positives = 92/143 (64%)
Query: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
M++F L+ ++QG+ RL K+Y +R + E+++ L+R + CSF+E++D K++Y+
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
+YA+L+ + +NE+ E IH +VE+LD+YF V ELDI+FN +K + ILDE ++
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 121 GDVQDTSKKSVLKAIEQADLLQE 143
G + +T++ +L + D + E
Sbjct: 121 GCIVETNRARILAPLLILDKMSE 143
>gi|5031581 adaptor-related protein complex 3, sigma 2 subunit [Homo
sapiens]
Length = 193
Score = 111 bits (278), Expect = 2e-25
Identities = 56/151 (37%), Positives = 97/151 (64%), Gaps = 6/151 (3%)
Query: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 54
M++ +L+F+ GK RL ++Y ++ ++++VRE +VL R +C+FLE D
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 55 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 114
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K ++IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 115 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 145
E +MGG V +T+ ++ IE + L++ +
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSE 151
>gi|4502861 adaptor-related protein complex 3, sigma 1 subunit [Homo
sapiens]
Length = 193
Score = 108 bits (270), Expect = 2e-24
Identities = 55/151 (36%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEW------RD 54
M++ +L+F+ GK RL K+Y S+ +++++RE +V R +C+FLE D
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 55 LKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 114
K++Y+ YA+LYF ++ ++EL L+LI +VE LDK F +VCELD+IF+ +K + IL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 115 DEFLMGGDVQDTSKKSVLKAIEQADLLQEED 145
E +MGG V +T+ ++ I+ + L++ +
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLEKSE 151
>gi|21361394 adaptor-related protein complex 4, sigma 1 subunit
isoform 1 [Homo sapiens]
Length = 159
Score = 92.0 bits (227), Expect = 2e-19
Identities = 39/105 (37%), Positives = 69/105 (65%)
Query: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
M++F L+ ++QG+ RL K+Y +R + E+++ L+R + CSF+E++D K++Y+
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIF 105
+YA+L+ + +NE+ E IH +VE+LD+YF V ELD+ F
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDVSF 105
>gi|11038643 adaptor-related protein complex 2, sigma 1 subunit
isoform AP17delta [Homo sapiens]
Length = 104
Score = 82.8 bits (203), Expect = 1e-16
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 38/135 (28%)
Query: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
M+RF+L+ +R GK RL KWY+ D E++K++ E+ VV R K +F
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNF----------- 49
Query: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
VE+L++YF +VCELD++FNF K Y ++DE +
Sbjct: 50 ---------------------------VEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 82
Query: 121 GDVQDTSKKSVLKAI 135
G++++TS+ VLK +
Sbjct: 83 GEIRETSQTKVLKQL 97
>gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Homo
sapiens]
Length = 453
Score = 38.1 bits (87), Expect = 0.003
Identities = 26/79 (32%), Positives = 37/79 (46%)
Query: 58 VYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEF 117
++ R++ LY + LEL+ R LL Y GS+ E I N Y +LDE
Sbjct: 57 IHIRHSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEV 116
Query: 118 LMGGDVQDTSKKSVLKAIE 136
L G VQ TS + + I+
Sbjct: 117 LDYGYVQTTSTEMLRNFIQ 135
>gi|68799814 adaptor-related protein complex 2, mu 1 subunit isoform
b [Homo sapiens]
Length = 433
Score = 37.7 bits (86), Expect = 0.004
Identities = 27/155 (17%), Positives = 67/155 (43%), Gaps = 2/155 (1%)
Query: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
M+ + +++ +G++ + + Y D R + + V+ AR+ +
Sbjct: 1 MIGGLFIYNHKGEVLISRVY--RDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV 58
Query: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
+ ++++ + N + E +++ +++ YFG + E +I NF Y +LDE L
Sbjct: 59 KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 118
Query: 121 GDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 155
G Q++ ++ I Q + + E + ++
Sbjct: 119 GYPQNSETGALKTFITQQGIKSQTKEEQSQITSQV 153
>gi|14917109 adaptor-related protein complex 2, mu 1 subunit isoform
a [Homo sapiens]
Length = 435
Score = 35.4 bits (80), Expect = 0.020
Identities = 26/137 (18%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
Query: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
M+ + +++ +G++ + + Y D R + + V+ AR+ +
Sbjct: 1 MIGGLFIYNHKGEVLISRVY--RDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV 58
Query: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
+ ++++ + N + E +++ +++ YFG + E +I NF Y +LDE L
Sbjct: 59 KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 118
Query: 121 GDVQDTSKKSVLKAIEQ 137
G Q++ ++ I Q
Sbjct: 119 GYPQNSETGALKTFITQ 135
>gi|6912240 adaptor-related protein complex 3, mu 1 subunit [Homo
sapiens]
Length = 418
Score = 35.0 bits (79), Expect = 0.027
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 65 LYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQ 124
L+F I+ + L +E +HR + YFG E I N Y +L+E L G
Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123
Query: 125 DTSKKSVLKAIEQADLLQ 142
T + + I+ +L+
Sbjct: 124 ATESNILKELIKPPTILR 141
>gi|46370095 adaptor-related protein complex 3, mu 1 subunit [Homo
sapiens]
Length = 418
Score = 35.0 bits (79), Expect = 0.027
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 65 LYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQ 124
L+F I+ + L +E +HR + YFG E I N Y +L+E L G
Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123
Query: 125 DTSKKSVLKAIEQADLLQ 142
T + + I+ +L+
Sbjct: 124 ATESNILKELIKPPTILR 141
>gi|197209857 adaptor-related protein complex 3, mu 2 subunit [Homo
sapiens]
Length = 418
Score = 35.0 bits (79), Expect = 0.027
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 65 LYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQ 124
++F I+ + L +E +HR V+ YFG E I N Y +L+E L G
Sbjct: 64 IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPL 123
Query: 125 DTSKKSVLKAIEQADLLQ 142
T + + I+ +L+
Sbjct: 124 ATESNILKELIKPPTILR 141
>gi|5803000 adaptor-related protein complex 3, mu 2 subunit [Homo
sapiens]
Length = 418
Score = 35.0 bits (79), Expect = 0.027
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 65 LYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQ 124
++F I+ + L +E +HR V+ YFG E I N Y +L+E L G
Sbjct: 64 IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPL 123
Query: 125 DTSKKSVLKAIEQADLLQ 142
T + + I+ +L+
Sbjct: 124 ATESNILKELIKPPTILR 141
>gi|9506797 adaptor-related protein complex 1, mu 2 subunit [Homo
sapiens]
Length = 423
Score = 35.0 bits (79), Expect = 0.027
Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 32 VRELMQVVLARKPK--MCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVE 89
+ M +++ R+ + + L + ++ ++++LY N + +++ +E
Sbjct: 30 IEHFMPLLVQREEEGALAPLLSHGQVHFLWIKHSNLYLVATTSKNANASLVYSFLYKTIE 89
Query: 90 LLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQ 137
+ +YF + E I NF Y +LDE + G Q T K + + I Q
Sbjct: 90 VFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQTTDSKILQEYITQ 137
>gi|7706337 coatomer protein complex, subunit zeta 1 [Homo sapiens]
Length = 177
Score = 34.7 bits (78), Expect = 0.035
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 2 MRFMLLFSRQGKLRLQKWYLAT--SDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVY 59
++ +L+ G K+Y T S KE+K + + R + LE L VVY
Sbjct: 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVY 69
Query: 60 KRYASLYFCCAIEGQDNELITLELIHRYVELLDKYF-GSVCELDIIFNFEKAYFILDEFL 118
K LYF +NEL+ + +++ + L + +V + ++ N E + +DE +
Sbjct: 70 KSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIV 129
Query: 119 MGGDVQDTSKKSVLKAI 135
GG + ++ + V+ +
Sbjct: 130 DGGVILESDPQQVVHRV 146
>gi|194473724 adaptor-related protein complex 1, mu 1 subunit
isoform 1 [Homo sapiens]
Length = 435
Score = 31.6 bits (70), Expect = 0.29
Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Query: 11 QGKLRLQKWYLATSDKERKKMVRELMQVVLARKPK--MCSFLEWRDLKVVYKRYASLYFC 68
+GK+ + + Y D V M +++ ++ + + L ++ ++ ++ +LY
Sbjct: 12 KGKVLICRNYRGDVDMSE---VEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLV 68
Query: 69 CAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSK 128
+ + +++ V++ +YF + E I NF Y +LDE + G Q T
Sbjct: 69 ATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDS 128
Query: 129 KSVLKAIEQ 137
K + + I Q
Sbjct: 129 KILQEYITQ 137
>gi|14210504 adaptor-related protein complex 1, mu 1 subunit isoform
2 [Homo sapiens]
Length = 423
Score = 31.6 bits (70), Expect = 0.29
Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Query: 11 QGKLRLQKWYLATSDKERKKMVRELMQVVLARKPK--MCSFLEWRDLKVVYKRYASLYFC 68
+GK+ + + Y D V M +++ ++ + + L ++ ++ ++ +LY
Sbjct: 12 KGKVLICRNYRGDVDMSE---VEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLV 68
Query: 69 CAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSK 128
+ + +++ V++ +YF + E I NF Y +LDE + G Q T
Sbjct: 69 ATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDS 128
Query: 129 KSVLKAIEQ 137
K + + I Q
Sbjct: 129 KILQEYITQ 137
>gi|11863154 archain isoform 1 [Homo sapiens]
Length = 511
Score = 29.6 bits (65), Expect = 1.1
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 30 KMVRELMQVVLARKPKMCS------FLEWRDLKVVYKRYASLYFCCAIEGQDNELITLEL 83
+M R ++ +LA PK+ + F+E ++ VY+ LY N L LE
Sbjct: 23 EMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLET 82
Query: 84 IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG-------------DVQDTSKKS 130
+ + ++ +Y ++ E +I + F DE + G D+ ++
Sbjct: 83 LRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEK 142
Query: 131 VLKAIEQADLLQEEDESPRSVLE 153
V +A+ + + + E R E
Sbjct: 143 VFRAVRETQEREAKAEMRRKAKE 165
>gi|64085161 thyroid stimulating hormone receptor isoform 2
precursor [Homo sapiens]
Length = 253
Score = 28.1 bits (61), Expect = 3.3
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 70 AIEGQDNELITLELIHRYVELLDKYFGSVCELDIIF-NFEKAYFILDEFLMGGDVQDTSK 128
A +G NE +TL+L + + Y + +LD ++ N K ++D+ GG S
Sbjct: 171 AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY---SG 227
Query: 129 KSVLKAIEQADLLQEEDESPRS 150
S+L + + L E ++PRS
Sbjct: 228 PSLLLPLGRKSLSFETQKAPRS 249
>gi|4758638 peroxiredoxin 6 [Homo sapiens]
Length = 224
Score = 28.1 bits (61), Expect = 3.3
Identities = 12/52 (23%), Positives = 30/52 (57%)
Query: 3 RFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRD 54
R + +F KL+L Y AT+ + +++R ++ + L + ++ + ++W+D
Sbjct: 132 RVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKD 183
>gi|6912626 fascin 2 isoform 1 [Homo sapiens]
Length = 492
Score = 28.1 bits (61), Expect = 3.3
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 50 LEWRDLKVVYKRYASLYFCCAIEGQ---------DNELITLELIHRYVELLDKYFGSVC 99
+EWR +V K Y C GQ +E TL+LI+R + +L G VC
Sbjct: 336 MEWRGRRVALKASNGRYVCMKKNGQLAAISDFVGKDEEFTLKLINRPILVLRGLDGFVC 394
>gi|199560536 hypothetical protein LOC283643 isoform 4 [Homo
sapiens]
Length = 352
Score = 27.7 bits (60), Expect = 4.3
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 12 GKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRY 62
GKLR + L +S +E+ ++ +L++ + ++ + L WR ++V+ R+
Sbjct: 132 GKLRFRWRQLVSSQQEQCALLSKLLRTLERENQRLEAVLAWRRSELVFWRW 182
>gi|199560438 hypothetical protein LOC283643 isoform 2 [Homo
sapiens]
Length = 393
Score = 27.7 bits (60), Expect = 4.3
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 12 GKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRY 62
GKLR + L +S +E+ ++ +L++ + ++ + L WR ++V+ R+
Sbjct: 173 GKLRFRWRQLVSSQQEQCALLSKLLRTLERENQRLEAVLAWRRSELVFWRW 223
>gi|239757058 PREDICTED: hypothetical protein [Homo sapiens]
Length = 603
Score = 26.9 bits (58), Expect = 7.3
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 70 AIEGQDNELITLELIHRYV---ELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121
A++ + EL++ E I Y+ +LL + SVC+ +F F +F + L GG
Sbjct: 180 ALKEKQTELLSEEKIVFYLSSPQLLAYFLISVCDQLALFRFHSTHFPRNTVLRGG 234
>gi|110347443 TATA element modulatory factor 1 [Homo sapiens]
Length = 1093
Score = 26.9 bits (58), Expect = 7.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 132 LKAIEQADLLQEEDESPRSVLEE 154
L + E ADLL+E+DE R ++EE
Sbjct: 539 LNSSETADLLKEKDEQIRGLMEE 561
>gi|196114970 protein tyrosine phosphatase, non-receptor type 12
isoform 3 [Homo sapiens]
Length = 650
Score = 26.6 bits (57), Expect = 9.5
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 96 GSVCELDIIFNFEKAYFILDEFLMGGDVQD--TSKKSVLKAIEQADLL 141
G++C +D +N KA I +EF + +Q+ T + S ++ EQ +L+
Sbjct: 109 GAICAIDYTWNLLKAGKIPEEFNVFNLIQEMRTQRHSAVQTKEQYELV 156
>gi|196114967 protein tyrosine phosphatase, non-receptor type 12
isoform 2 [Homo sapiens]
Length = 661
Score = 26.6 bits (57), Expect = 9.5
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 96 GSVCELDIIFNFEKAYFILDEFLMGGDVQD--TSKKSVLKAIEQADLL 141
G++C +D +N KA I +EF + +Q+ T + S ++ EQ +L+
Sbjct: 120 GAICAIDYTWNLLKAGKIPEEFNVFNLIQEMRTQRHSAVQTKEQYELV 167
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.139 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,450,717
Number of Sequences: 37866
Number of extensions: 216061
Number of successful extensions: 723
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 34
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.