Guide to the Human Genome
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Name: SCGB1A1 Sequence: fasta or formatted (91aa) NCBI GI: 4507809
Description:

secretoglobin, family 1A, member 1 (uteroglobin)

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9          9           2
 C cysteine            4.4          4           2
 D aspartate           4.4          4           1
 E glutamate           7.7          7           1
 F phenylalanine       2.2          2           1
 G glycine             1.1          1           1
 H histidine           0.0          0           0
 I isoleucine          5.5          5           2
 K lysine              6.6          6           2
 L leucine            14.3         13           2
 M methionine          5.5          5           1
 N asparagine          1.1          1           1
 P proline             5.5          5           1
 Q glutamine           5.5          5           1
 R arginine            3.3          3           1
 S serine             11.0         10           2
 T threonine           6.6          6           1
 V valine              4.4          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   secretoglobin, family 1A, member 1 (uteroglobin) [Hom... 
SCGB1D1               0.164   lipophilin A precursor 
SCGB1D2               0.145   lipophilin B precursor 
SCGB1D4               0.118   secretoglobin family 1D member 4 
SCGB1C1               0.092   secretoglobin, family 1C, member 1 
LOC653486             0.079   secretoglobin, family 1C, member 1-like 
TOPBP1                0.020   topoisomerase (DNA) II binding protein 1 
NLRC5                 0.020   nucleotide-binding oligomerization domains 27 [Homo...
ATR                   0.013   ataxia telangiectasia and Rad3 related protein [Hom...
CDON                  0.013   surface glycoprotein, Ig superfamily member 
ID1                   0.013   inhibitor of DNA binding 1 isoform a 
ID1                   0.013   inhibitor of DNA binding 1 isoform b 
EIF4A3                0.013   eukaryotic translation initiation factor 4A, isoform ...
TBC1D27               0.007   PREDICTED: TBC1 domain family, member 27 
TBC1D27               0.007   PREDICTED: TBC1 domain family, member 27 
TBC1D27               0.007   PREDICTED: TBC1 domain family, member 27 
FAM129C               0.007   B-cell novel protein 1 isoform b 
RGS7BP                0.007   regulator of G-protein signaling 7 binding protein [...
FAM129C               0.007   B-cell novel protein 1 isoform a 
SCGB3A2               0.007   secretoglobin, family 3A, member 2 
TRMT5                 0.007   tRNA methyltransferase 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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