Guide to the Human Genome
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Name: SCGB1D2 Sequence: fasta or formatted (90aa) NCBI GI: 5729909
Description:

lipophilin B precursor

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         10           2
 C cysteine            6.7          6           2
 D aspartate           3.3          3           1
 E glutamate           5.6          5           1
 F phenylalanine       6.7          6           3
 G glycine             1.1          1           1
 H histidine           0.0          0           0
 I isoleucine          3.3          3           1
 K lysine             10.0          9           2
 L leucine            18.9         17           3
 M methionine          2.2          2           1
 N asparagine          1.1          1           1
 P proline             4.4          4           2
 Q glutamine           3.3          3           1
 R arginine            2.2          2           1
 S serine              7.8          7           1
 T threonine           2.2          2           1
 V valine              8.9          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lipophilin B precursor 
SCGB1D1               0.539   lipophilin A precursor 
SCGB1D4               0.467   secretoglobin family 1D member 4 
SCGB1A1               0.145   secretoglobin, family 1A, member 1 (uteroglobin) [Hom...
SCGBL                 0.053   secretoglobin-like 
SCGB3A2               0.020   secretoglobin, family 3A, member 2 
ANXA10                0.000   annexin A10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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