Search of human proteins with 4507117

Search of human proteins with 4507117

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507117 Stannin [Homo sapiens]
         (88 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4507117 Stannin [Homo sapiens]                                     179   4e-46
gi|46409276 transmembrane protein 207 [Homo sapiens]                   29   0.70 
gi|30179909 paired immunoglobulin-like type 2 receptor alpha iso...    28   2.0  
gi|22758136 MAP7 domain containing 2 [Homo sapiens]                    28   2.0  
gi|223029449 neural proliferation, differentiation and control, ...    27   3.5  
gi|52630342 major histocompatibility complex, class I, C precurs...    27   4.5  
gi|157694526 Fc receptor-like 5 [Homo sapiens]                         27   4.5  
gi|21264353 SWI/SNF related, matrix associated, actin dependent ...    27   4.5  
gi|51477704 SWI/SNF related, matrix associated, actin dependent ...    27   4.5  
gi|51477702 SWI/SNF related, matrix associated, actin dependent ...    27   4.5  
gi|210031822 Fc fragment of IgG, low affinity IIa, receptor isof...    26   5.9  
gi|50511936 Fc fragment of IgG, low affinity IIa, receptor isofo...    26   5.9  
gi|149999608 surfactant protein C [Homo sapiens]                       26   5.9  
gi|21686977 cell adhesion molecule 4 [Homo sapiens]                    26   7.7  
gi|189217881 carcinoembryonic antigen-related cell adhesion mole...    26   7.7  
gi|45267817 carcinoembryonic antigen-related cell adhesion molec...    26   7.7  

>gi|4507117 Stannin [Homo sapiens]
          Length = 88

 Score =  179 bits (454), Expect = 4e-46
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MSIMDHSPTTGVVTVIVILIAIAALGALILGCWCYLRLQRISQSEDEESIVGDGETKEPF 60
          MSIMDHSPTTGVVTVIVILIAIAALGALILGCWCYLRLQRISQSEDEESIVGDGETKEPF
Sbjct: 1  MSIMDHSPTTGVVTVIVILIAIAALGALILGCWCYLRLQRISQSEDEESIVGDGETKEPF 60

Query: 61 LLVQYSAKGPCVERKAKLMTPNGPEVHG 88
          LLVQYSAKGPCVERKAKLMTPNGPEVHG
Sbjct: 61 LLVQYSAKGPCVERKAKLMTPNGPEVHG 88


>gi|46409276 transmembrane protein 207 [Homo sapiens]
          Length = 146

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 5  DHSPTTGVVTVIVILIAIAAL--GALILGCWCYLRLQRISQSEDEESIVGDGE 55
          D  P    + ++++L+ +AAL  GA++L   C+LR  RI       ++   G+
Sbjct: 44 DQHPNGWYIWILLLLVLVAALLCGAVVLCLQCWLRRPRIDSHRRTMAVFAVGD 96


>gi|30179909 paired immunoglobulin-like type 2 receptor alpha
           isoform 1 precursor [Homo sapiens]
          Length = 303

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 14  TVIVILIAIAALGALILGCWCYLRLQRISQSEDEESIVGDGETKEPF 60
           T + + +A+  LG +ILG  C LR +R    + ++        +EPF
Sbjct: 196 TAVGVAVAVTVLGIMILGLICLLRWRR---RKGQQRTKATTPAREPF 239


>gi|22758136 MAP7 domain containing 2 [Homo sapiens]
          Length = 732

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 37  RLQRISQSEDEESIVGDGETKEPFLLVQYSAKGPCVERKAKLMTPNGPEVHG 88
           R+  I +   +  +    + ++P + VQ +    CVE+K KL+ PN  E++G
Sbjct: 543 RIDEIMKRTRKSDVPPQVKKEDPKVGVQPAV---CVEKKTKLVVPNKMEING 591


>gi|223029449 neural proliferation, differentiation and control, 1
           [Homo sapiens]
          Length = 325

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 11  GVVTVIVILIAIAALGALILG--CWCYLRLQ-RISQSEDEESIVGDGETKEP 59
           G+  V+++   +A   AL +   CWC L+ + R++Q  D  +    G    P
Sbjct: 182 GLALVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPAAP 233


>gi|52630342 major histocompatibility complex, class I, C precursor
           [Homo sapiens]
          Length = 366

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 8   PTTGVVTVIVILIAIAALGALILGCWC 34
           P  G+V  + +L+ +A LGA++    C
Sbjct: 307 PIMGIVAGLAVLVVLAVLGAVVTAMMC 333


>gi|157694526 Fc receptor-like 5 [Homo sapiens]
          Length = 977

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 10  TGVVTVIVILIAIAALGALILGCWCYLRLQRISQSEDEESIVGDGETKEP 59
           TGV   ++ +  +AA GAL+L CW   +  R   S+   S   D +++EP
Sbjct: 850 TGVAGGLLSIAGLAA-GALLLYCWLSRKAGRKPASDPARS-PSDSDSQEP 897


>gi|21264353 SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily d, member 3 isoform 1
           [Homo sapiens]
          Length = 470

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 27  ALILGCWCYLRLQRISQSEDEESIVGD 53
           A++   W Y++  R+  S D+E I GD
Sbjct: 269 AIVQALWQYVKTNRLQDSHDKEYINGD 295


>gi|51477704 SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily d, member 3 isoform 1
           [Homo sapiens]
          Length = 470

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 27  ALILGCWCYLRLQRISQSEDEESIVGD 53
           A++   W Y++  R+  S D+E I GD
Sbjct: 269 AIVQALWQYVKTNRLQDSHDKEYINGD 295


>gi|51477702 SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily d, member 3 isoform 2
           [Homo sapiens]
          Length = 483

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 27  ALILGCWCYLRLQRISQSEDEESIVGD 53
           A++   W Y++  R+  S D+E I GD
Sbjct: 282 AIVQALWQYVKTNRLQDSHDKEYINGD 308


>gi|210031822 Fc fragment of IgG, low affinity IIa, receptor isoform
           1 [Homo sapiens]
          Length = 317

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 4   MDHSPTTGVVTVIVILIAIAALGALILGCWCYLRLQRISQSEDE 47
           M  S   G++  +VI  A+AA+ A ++    Y R +RIS +  +
Sbjct: 210 MGSSSPMGIIVAVVIATAVAAIVAAVVAL-IYCRKKRISANSTD 252


>gi|50511936 Fc fragment of IgG, low affinity IIa, receptor isoform
           2 [Homo sapiens]
          Length = 316

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 4   MDHSPTTGVVTVIVILIAIAALGALILGCWCYLRLQRISQSEDE 47
           M  S   G++  +VI  A+AA+ A ++    Y R +RIS +  +
Sbjct: 209 MGSSSPMGIIVAVVIATAVAAIVAAVVAL-IYCRKKRISANSTD 251


>gi|149999608 surfactant protein C [Homo sapiens]
          Length = 197

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 9/20 (45%), Positives = 16/20 (80%)

Query: 12 VVTVIVILIAIAALGALILG 31
          +V V+V+LI +  +GAL++G
Sbjct: 38 IVVVVVVLIVVVIVGALLMG 57


>gi|21686977 cell adhesion molecule 4 [Homo sapiens]
          Length = 388

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 11  GVVTVIVILIAIAALGALILGCWCYLRLQRISQSEDEESIVGDGETKEPFL 61
           G++ ++V LI    +G +    WC +R +    + +   +   GE +E FL
Sbjct: 328 GILALLVFLIICVLVGMV----WCSVRQKGSYLTHEASGLDEQGEAREAFL 374


>gi|189217881 carcinoembryonic antigen-related cell adhesion
           molecule 19 isoform 1 [Homo sapiens]
          Length = 299

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 6   HSPTTGVVTVIVILIAIAALGALILGCWCYLRLQR 40
           H PT   +    I+ ++AA GAL++ C  YL + R
Sbjct: 151 HLPTNAGILAATIIGSLAA-GALLISCIAYLLVTR 184


>gi|45267817 carcinoembryonic antigen-related cell adhesion molecule
           19 isoform 2 [Homo sapiens]
          Length = 300

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 6   HSPTTGVVTVIVILIAIAALGALILGCWCYLRLQR 40
           H PT   +    I+ ++AA GAL++ C  YL + R
Sbjct: 151 HLPTNAGILAATIIGSLAA-GALLISCIAYLLVTR 184


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,233,719
Number of Sequences: 37866
Number of extensions: 110441
Number of successful extensions: 308
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 16
length of query: 88
length of database: 18,247,518
effective HSP length: 60
effective length of query: 28
effective length of database: 15,975,558
effective search space: 447315624
effective search space used: 447315624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.