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Search of human proteins with 4506649
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506649 ribosomal protein L3 isoform a [Homo sapiens]
(403 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506649 ribosomal protein L3 isoform a [Homo sapiens] 822 0.0
gi|76496472 ribosomal protein L3 isoform b [Homo sapiens] 697 0.0
gi|4826988 ribosomal protein L3-like [Homo sapiens] 666 0.0
gi|169215858 PREDICTED: similar to ribosomal protein L3, partial... 253 3e-67
gi|6005862 mitochondrial ribosomal protein L3 [Homo sapiens] 39 0.006
gi|224493919 zinc finger and SCAN domain containing 18 isoform 2... 31 2.3
gi|224493912 zinc finger and SCAN domain containing 18 isoform 3... 31 2.3
gi|226371704 zinc finger and SCAN domain containing 18 isoform 3... 31 2.3
gi|224493905 zinc finger and SCAN domain containing 18 isoform 1... 31 2.3
gi|75677365 dynein heavy chain domain 3 [Homo sapiens] 30 5.1
gi|222418570 hypothetical protein LOC728591 isoform b [Homo sapi... 29 6.6
gi|222418567 hypothetical protein LOC728591 isoform b [Homo sapi... 29 6.6
gi|62243374 MAD1-like 1 protein [Homo sapiens] 29 6.6
gi|62243369 MAD1-like 1 protein [Homo sapiens] 29 6.6
gi|62243332 MAD1-like 1 protein [Homo sapiens] 29 6.6
gi|4885583 Rho-associated, coiled-coil containing protein kinase... 29 8.6
gi|222418565 hypothetical protein LOC728591 isoform a [Homo sapi... 29 8.6
gi|33457316 pleckstrin homology domain containing, family O memb... 29 8.6
>gi|4506649 ribosomal protein L3 isoform a [Homo sapiens]
Length = 403
Score = 822 bits (2122), Expect = 0.0
Identities = 403/403 (100%), Positives = 403/403 (100%)
Query: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360
Query: 361 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA 403
EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA
Sbjct: 361 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA 403
>gi|76496472 ribosomal protein L3 isoform b [Homo sapiens]
Length = 354
Score = 697 bits (1800), Expect = 0.0
Identities = 354/403 (87%), Positives = 354/403 (87%), Gaps = 49/403 (12%)
Query: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
NWHKSK KKAHL
Sbjct: 121 NWHKSK-------------------------------------------------KKAHL 131
Query: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
Sbjct: 132 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 191
Query: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 192 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 251
Query: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 252 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 311
Query: 361 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA 403
EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA
Sbjct: 312 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA 354
>gi|4826988 ribosomal protein L3-like [Homo sapiens]
Length = 407
Score = 666 bits (1719), Expect = 0.0
Identities = 311/394 (78%), Positives = 359/394 (91%)
Query: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
MSHRKFSAPRHG LGFLP KRS RHRGKVK++P+DDPS+PVHLTAFLGYKAGMTH +REV
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
RPG K++K+E VEAVTIVETPP+VVVG+VGYV TPRGLR+FKT+FAEH+SDEC+RRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
+WHKSKKKAFTK CK+W+D DGKKQL+KDF++MKKYC+VIRVI HTQM+LLP RQKKAH+
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
MEIQ+NGGTVAEK+ WA+ RLE+QVPV+ VF Q E+IDVI VTKG+G KGVTSRWHTKKL
Sbjct: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240
Query: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
PRKTH+GLRKVACIGAWHPARV S+ARAGQKGYHHRTE+NKKI++IG+G ++DGKL+K
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVK 300
Query: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360
NNAST YD++ KSI PLGGF HYGEV NDFVMLKGC+ GTKKRV+TLRKSLLV R+A+
Sbjct: 301 NNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAV 360
Query: 361 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKK 394
E I+LKFIDTTSKFGHGRFQT +EK+AFMGP KK
Sbjct: 361 ENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK 394
>gi|169215858 PREDICTED: similar to ribosomal protein L3, partial
[Homo sapiens]
Length = 126
Score = 253 bits (645), Expect = 3e-67
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 278 TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV 337
TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV
Sbjct: 1 TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV 60
Query: 338 VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI 397
VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI
Sbjct: 61 VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI 120
Query: 398 AKEEGA 403
AKEEGA
Sbjct: 121 AKEEGA 126
>gi|6005862 mitochondrial ribosomal protein L3 [Homo sapiens]
Length = 348
Score = 39.3 bits (90), Expect = 0.006
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 211 FGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP-----RKTHRGLRKVACIGAWHPARVAFS 265
F + +DV T GKG++GV RW K P KTH R+ + RV
Sbjct: 198 FRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTH---RRPGAVATGDIGRVWPG 254
Query: 266 VARAGQKGYHHRTEINKKIYKI 287
G+ G +RTE K+++I
Sbjct: 255 TKMPGKMGNIYRTEYGLKVWRI 276
>gi|224493919 zinc finger and SCAN domain containing 18 isoform 2
[Homo sapiens]
Length = 374
Score = 30.8 bits (68), Expect = 2.3
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 212 GQDEMIDVIGVTKGKGYK----GVTSRWHTKKLPR-KTHRGLRKVACIGAWHPARVAFSV 266
GQ D G+++GK Y G W + + +H G ++ AC G W + ++
Sbjct: 261 GQGPGADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLAL 320
Query: 267 ARAGQKGYHHRTEINKKIYKIG 288
A H +T +K Y +G
Sbjct: 321 AE------HQKTHEKEKSYALG 336
>gi|224493912 zinc finger and SCAN domain containing 18 isoform 3
[Homo sapiens]
Length = 510
Score = 30.8 bits (68), Expect = 2.3
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 212 GQDEMIDVIGVTKGKGYK----GVTSRWHTKKLPR-KTHRGLRKVACIGAWHPARVAFSV 266
GQ D G+++GK Y G W + + +H G ++ AC G W + ++
Sbjct: 397 GQGPGADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLAL 456
Query: 267 ARAGQKGYHHRTEINKKIYKIG 288
A H +T +K Y +G
Sbjct: 457 AE------HQKTHEKEKSYALG 472
>gi|226371704 zinc finger and SCAN domain containing 18 isoform 3
[Homo sapiens]
Length = 510
Score = 30.8 bits (68), Expect = 2.3
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 212 GQDEMIDVIGVTKGKGYK----GVTSRWHTKKLPR-KTHRGLRKVACIGAWHPARVAFSV 266
GQ D G+++GK Y G W + + +H G ++ AC G W + ++
Sbjct: 397 GQGPGADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLAL 456
Query: 267 ARAGQKGYHHRTEINKKIYKIG 288
A H +T +K Y +G
Sbjct: 457 AE------HQKTHEKEKSYALG 472
>gi|224493905 zinc finger and SCAN domain containing 18 isoform 1
[Homo sapiens]
Length = 566
Score = 30.8 bits (68), Expect = 2.3
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 212 GQDEMIDVIGVTKGKGYK----GVTSRWHTKKLPR-KTHRGLRKVACIGAWHPARVAFSV 266
GQ D G+++GK Y G W + + +H G ++ AC G W + ++
Sbjct: 453 GQGPGADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLAL 512
Query: 267 ARAGQKGYHHRTEINKKIYKIG 288
A H +T +K Y +G
Sbjct: 513 AE------HQKTHEKEKSYALG 528
>gi|75677365 dynein heavy chain domain 3 [Homo sapiens]
Length = 4427
Score = 29.6 bits (65), Expect = 5.1
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 152 SMKKYCQVIRVIAHTQMR----LLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQV 205
+M+ Y ++ RV+ ++R L LR+K+A L E Q VAEKL+ +++ ++++
Sbjct: 3202 AMELYGRLYRVVEPKRIRMNAALAQLREKQAALAEAQEKLREVAEKLEMLKKQYDEKL 3259
>gi|222418570 hypothetical protein LOC728591 isoform b [Homo
sapiens]
Length = 139
Score = 29.3 bits (64), Expect = 6.6
Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 171 LPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 230
+P+ L +++ T+ ++ + +LEQ+ Q + + +++G G
Sbjct: 1 MPVESLNTLLKQLEEEKKTLESQVKYYALKLEQESKAYQKINNERRTYLAEMSQGSGLHQ 60
Query: 231 VTSRWHTKKLPRKTHRGLRKVACIGAWHPARVA----FSVARAGQKGYHHRTEINKK 283
V+ R +LPR ++ + P +V+ + AG G +RT + +K
Sbjct: 61 VSKRQQVDQLPRMQENLVKTLLLKEELDPLKVSCLETLGFSAAGVAGPENRTCLGQK 117
>gi|222418567 hypothetical protein LOC728591 isoform b [Homo
sapiens]
Length = 139
Score = 29.3 bits (64), Expect = 6.6
Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 171 LPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKG 230
+P+ L +++ T+ ++ + +LEQ+ Q + + +++G G
Sbjct: 1 MPVESLNTLLKQLEEEKKTLESQVKYYALKLEQESKAYQKINNERRTYLAEMSQGSGLHQ 60
Query: 231 VTSRWHTKKLPRKTHRGLRKVACIGAWHPARVA----FSVARAGQKGYHHRTEINKK 283
V+ R +LPR ++ + P +V+ + AG G +RT + +K
Sbjct: 61 VSKRQQVDQLPRMQENLVKTLLLKEELDPLKVSCLETLGFSAAGVAGPENRTCLGQK 117
>gi|62243374 MAD1-like 1 protein [Homo sapiens]
Length = 718
Score = 29.3 bits (64), Expect = 6.6
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 147 EKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQ 204
E+D + +K + + + L LR++ AHL E++ G + E+L+ + +L +Q
Sbjct: 236 EQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQ 293
>gi|62243369 MAD1-like 1 protein [Homo sapiens]
Length = 718
Score = 29.3 bits (64), Expect = 6.6
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 147 EKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQ 204
E+D + +K + + + L LR++ AHL E++ G + E+L+ + +L +Q
Sbjct: 236 EQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQ 293
>gi|62243332 MAD1-like 1 protein [Homo sapiens]
Length = 718
Score = 29.3 bits (64), Expect = 6.6
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 147 EKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQ 204
E+D + +K + + + L LR++ AHL E++ G + E+L+ + +L +Q
Sbjct: 236 EQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQ 293
>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
[Homo sapiens]
Length = 1354
Score = 28.9 bits (63), Expect = 8.6
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 6/143 (4%)
Query: 100 RTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQV 159
RT KT +++ R+ +K +KKA T+ +K + E+ K QLE + K V
Sbjct: 996 RTLKTQAVNKLAEIMNRKDFKI---DRKKANTQDLRKKEKENRKLQLELNQEREKFNQMV 1052
Query: 160 IRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARER---LEQQVPVNQVFGQDEM 216
++ L ++ AH E+Q+ + ++ R + L V DE
Sbjct: 1053 VKHQKELNDMQAQLVEECAHRNELQMQLASKESDIEQLRAKLLDLSDSTSVASFPSADET 1112
Query: 217 IDVIGVTKGKGYKGVTSRWHTKK 239
+ ++ +G+ V +R + K+
Sbjct: 1113 DGNLPESRIEGWLSVPNRGNIKR 1135
>gi|222418565 hypothetical protein LOC728591 isoform a [Homo
sapiens]
Length = 214
Score = 28.9 bits (63), Expect = 8.6
Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 9/128 (7%)
Query: 143 KKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202
K+++EK + IRV +P+ L +++ T+ ++ + +LE
Sbjct: 80 KEKVEKIHGNSSDRLSSIRVYER-----MPVESLNTLLKQLEEEKKTLESQVKYYALKLE 134
Query: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARV 262
Q+ Q + + +++G G V+ R +LPR ++ G ++PA+
Sbjct: 135 QESKAYQKINNERRTYLAEMSQGSGLHQVSKRQQVDQLPRMQENLVK----TGRYNPAKQ 190
Query: 263 AFSVARAG 270
A+ G
Sbjct: 191 KTVSAKRG 198
>gi|33457316 pleckstrin homology domain containing, family O member
2 [Homo sapiens]
Length = 490
Score = 28.9 bits (63), Expect = 8.6
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 137 WQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDW 196
+++ED +K +E + CQ +R + + R + LR + +I+ T EK W
Sbjct: 51 YENEDDQKCVETVELGSYEKCQDLRALLKRKHRFILLRSPGNKVSDIKFQAPTGEEKESW 110
Query: 197 ARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVT 232
+ E +N+ G+++ D + V K + VT
Sbjct: 111 IKALNE---GINR--GKNKAFDEVKVDKSCALEHVT 141
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,482,943
Number of Sequences: 37866
Number of extensions: 683086
Number of successful extensions: 1515
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1506
Number of HSP's gapped (non-prelim): 19
length of query: 403
length of database: 18,247,518
effective HSP length: 105
effective length of query: 298
effective length of database: 14,271,588
effective search space: 4252933224
effective search space used: 4252933224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.