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Search of human proteins with 4506597
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506597 ribosomal protein L12 [Homo sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506597 ribosomal protein L12 [Homo sapiens] 331 2e-91
gi|25306275 mitochondrial ribosomal protein L11 isoform c [Homo ... 32 0.33
gi|7705618 mitochondrial ribosomal protein L11 isoform a [Homo s... 32 0.33
gi|167466272 cytoskeleton associated protein 2-like [Homo sapiens] 31 0.43
gi|169790837 runt-related transcription factor 1 isoform AML1a [... 31 0.56
gi|19923198 runt-related transcription factor 1 isoform AML1c [H... 31 0.56
gi|49574546 runt-related transcription factor 1 isoform AML1b [H... 31 0.56
gi|21450832 spindle and KT associated 1 [Homo sapiens] 30 0.73
gi|88014625 spindle and KT associated 1 [Homo sapiens] 30 0.73
gi|209969686 GRAM domain containing 1A isoform 2 [Homo sapiens] 30 0.95
gi|92110010 GRAM domain containing 1A isoform 1 [Homo sapiens] 30 0.95
gi|24308075 RAB11 family interacting protein 5 (class I) [Homo s... 28 2.8
gi|56550073 peptidoglycan recognition protein-I-beta precursor [... 28 3.6
gi|84043967 REV1-like isoform 2 [Homo sapiens] 28 4.7
gi|7706681 REV1-like isoform 1 [Homo sapiens] 28 4.7
gi|126116565 MYC binding protein 2 [Homo sapiens] 28 4.7
gi|208022687 GTPase regulator associated with the focal adhesion... 27 8.0
gi|7662208 GTPase regulator associated with the focal adhesion k... 27 8.0
gi|21687188 hypothetical protein LOC146325 [Homo sapiens] 27 8.0
>gi|4506597 ribosomal protein L12 [Homo sapiens]
Length = 165
Score = 331 bits (849), Expect = 2e-91
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
Query: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS 120
KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS
Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS 120
Query: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS 165
LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS 165
>gi|25306275 mitochondrial ribosomal protein L11 isoform c [Homo
sapiens]
Length = 181
Score = 31.6 bits (70), Expect = 0.33
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 28 LAPKIGPLGLSPKKVGDDIAKATGDWK-GLRITVKLTIQ-NRQAQIEVVPSASALIIKAL 85
L P +G G+S + + + T D K G+ + K+ ++ +R +I++ + +KA
Sbjct: 35 LGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAA 94
Query: 86 KEPPRDRKKQKNIKHSGNITFDEIVNIAR-QMRHRSLARE---LSGTIKEILGTAQSVGC 141
+ + Q + +G +T + IAR + + + A + LS ++ I+G+A+S+G
Sbjct: 95 AGIEKGAR-QTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGI 153
Query: 142 NV 143
V
Sbjct: 154 RV 155
>gi|7705618 mitochondrial ribosomal protein L11 isoform a [Homo
sapiens]
Length = 192
Score = 31.6 bits (70), Expect = 0.33
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 28 LAPKIGPLGLSPKKVGDDIAKATGDWK-GLRITVKLTIQ-NRQAQIEVVPSASALIIKAL 85
L P +G G+S + + + T D K G+ + K+ ++ +R +I++ + +KA
Sbjct: 35 LGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAA 94
Query: 86 KEPPRDRKKQKNIKHSGNITFDEIVNIAR-QMRHRSLARE---LSGTIKEILGTAQSVGC 141
+ + Q + +G +T + IAR + + + A + LS ++ I+G+A+S+G
Sbjct: 95 AGIEKGAR-QTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGI 153
Query: 142 NV 143
V
Sbjct: 154 RV 155
>gi|167466272 cytoskeleton associated protein 2-like [Homo sapiens]
Length = 745
Score = 31.2 bits (69), Expect = 0.43
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 35 LGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKK 94
L + K D+ G I K T ++R+ Q+E + K K PP + K
Sbjct: 432 LNKTAPKTQADVTTVNGTQTNPNIKKKATAEDRRKQLEEWQKSKG---KTYKRPPMELKT 488
Query: 95 QKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDD 154
++ + NI+F + +I ++ + ELS I L ++ ++G P + I +
Sbjct: 489 KRKVIKEMNISFWK--SIEKEEEEKKAQLELSSKINNTLTECLNL---IEGGVPSNEILN 543
Query: 155 INSGAVE 161
I S E
Sbjct: 544 ILSSIPE 550
>gi|169790837 runt-related transcription factor 1 isoform AML1a
[Homo sapiens]
Length = 250
Score = 30.8 bits (68), Expect = 0.56
Identities = 15/68 (22%), Positives = 33/68 (48%)
Query: 54 KGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIA 113
+G T+ +T+ Q+ A + + +EP R R+K + G+++F E ++
Sbjct: 142 RGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSEL 201
Query: 114 RQMRHRSL 121
Q+R ++
Sbjct: 202 EQLRRTAM 209
>gi|19923198 runt-related transcription factor 1 isoform AML1c [Homo
sapiens]
Length = 480
Score = 30.8 bits (68), Expect = 0.56
Identities = 15/68 (22%), Positives = 33/68 (48%)
Query: 54 KGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIA 113
+G T+ +T+ Q+ A + + +EP R R+K + G+++F E ++
Sbjct: 169 RGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSEL 228
Query: 114 RQMRHRSL 121
Q+R ++
Sbjct: 229 EQLRRTAM 236
>gi|49574546 runt-related transcription factor 1 isoform AML1b [Homo
sapiens]
Length = 453
Score = 30.8 bits (68), Expect = 0.56
Identities = 15/68 (22%), Positives = 33/68 (48%)
Query: 54 KGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIA 113
+G T+ +T+ Q+ A + + +EP R R+K + G+++F E ++
Sbjct: 142 RGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSEL 201
Query: 114 RQMRHRSL 121
Q+R ++
Sbjct: 202 EQLRRTAM 209
>gi|21450832 spindle and KT associated 1 [Homo sapiens]
Length = 255
Score = 30.4 bits (67), Expect = 0.73
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 85 LKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEI 132
+K+PP K+Q++IK IT DE + M+ R +++ IKEI
Sbjct: 124 VKKPP---KEQRSIKEMPFITCDEFNGVPSYMKSRLTYNQINDVIKEI 168
>gi|88014625 spindle and KT associated 1 [Homo sapiens]
Length = 255
Score = 30.4 bits (67), Expect = 0.73
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 85 LKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEI 132
+K+PP K+Q++IK IT DE + M+ R +++ IKEI
Sbjct: 124 VKKPP---KEQRSIKEMPFITCDEFNGVPSYMKSRLTYNQINDVIKEI 168
>gi|209969686 GRAM domain containing 1A isoform 2 [Homo sapiens]
Length = 713
Score = 30.0 bits (66), Expect = 0.95
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 7 PNEIKVVYLRCTGGEVGATSALAPKIGPLGL----SPKKVGDDIA 47
P E+ + +C G E+G TS + PL L +PK+VGD IA
Sbjct: 199 PRELWHLVHQCYGSELGLTSEDEDYVSPLQLNGLGTPKEVGDVIA 243
>gi|92110010 GRAM domain containing 1A isoform 1 [Homo sapiens]
Length = 724
Score = 30.0 bits (66), Expect = 0.95
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 7 PNEIKVVYLRCTGGEVGATSALAPKIGPLGL----SPKKVGDDIA 47
P E+ + +C G E+G TS + PL L +PK+VGD IA
Sbjct: 206 PRELWHLVHQCYGSELGLTSEDEDYVSPLQLNGLGTPKEVGDVIA 250
>gi|24308075 RAB11 family interacting protein 5 (class I) [Homo
sapiens]
Length = 653
Score = 28.5 bits (62), Expect = 2.8
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 21 EVGATSALAPKIGP-LGLSPKKVGDDIAKATGDWKGLR 57
E+G S+L K GP LG SP KA W GLR
Sbjct: 476 ELGRRSSLGEKGGPILGASPHHSSSGEEKAKSSWFGLR 513
>gi|56550073 peptidoglycan recognition protein-I-beta precursor
[Homo sapiens]
Length = 373
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 78 SALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQ 137
SAL I+A + ++ + K + F+ I Q+ + L ++S T+ A+
Sbjct: 9 SALGIQAWGDSSWNKTQAKQVSEGLQYLFENI----SQLTEKGLPTDVSTTVSRKAWGAE 64
Query: 138 SVGCNVDGRHPHDIIDDINSGAVEC 162
+VGC++ P +++ + +EC
Sbjct: 65 AVGCSIQLTTPVNVLVIHHVPGLEC 89
>gi|84043967 REV1-like isoform 2 [Homo sapiens]
Length = 1250
Score = 27.7 bits (60), Expect = 4.7
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 4 KFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLS-PKKVGDDIAKATGDWKGLRITVKL 62
K E K V+ E+ + S + P P + A+++G W GL V
Sbjct: 862 KSTEEEHKEVFRAAVDLEISSASRTCTFLPPFPAHLPTSPDTNKAESSGKWNGLHTPV-- 919
Query: 63 TIQNRQAQIEVVPSASALIIKALKEPPRDRKKQ 95
++Q+R VPS S L L+ P D ++Q
Sbjct: 920 SVQSRLNLSIEVPSPSQLDQSVLEALPPDLREQ 952
>gi|7706681 REV1-like isoform 1 [Homo sapiens]
Length = 1251
Score = 27.7 bits (60), Expect = 4.7
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 4 KFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLS-PKKVGDDIAKATGDWKGLRITVKL 62
K E K V+ E+ + S + P P + A+++G W GL V
Sbjct: 863 KSTEEEHKEVFRAAVDLEISSASRTCTFLPPFPAHLPTSPDTNKAESSGKWNGLHTPV-- 920
Query: 63 TIQNRQAQIEVVPSASALIIKALKEPPRDRKKQ 95
++Q+R VPS S L L+ P D ++Q
Sbjct: 921 SVQSRLNLSIEVPSPSQLDQSVLEALPPDLREQ 953
>gi|126116565 MYC binding protein 2 [Homo sapiens]
Length = 4640
Score = 27.7 bits (60), Expect = 4.7
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 74 VPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEIL 133
+P S +K +PPR+R K + + + + + +R RS + + K+
Sbjct: 2812 LPQKSTAPVKTKLDPPRERSKSDSYTLDPDTLRKKKMPLTEPLRGRSTSPKPKSVPKD-- 2869
Query: 134 GTAQSVGCNVDGRHPHDIIDDINSGAVE-CPAS 165
+ S G PH + ++++S VE C +S
Sbjct: 2870 -STDSPGSENRAPSPHVVQENLHSEVVEVCTSS 2901
>gi|208022687 GTPase regulator associated with the focal adhesion
kinase pp125 isoform b [Homo sapiens]
Length = 759
Score = 26.9 bits (58), Expect = 8.0
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 43 GDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRK 93
G ++AK GD+K + ++IQN + + E S ++K +KE P + K
Sbjct: 214 GYELAKDFGDFK---TQLTISIQNTRNRFEGTRSEVESLMKKMKENPLEHK 261
>gi|7662208 GTPase regulator associated with the focal adhesion
kinase pp125 isoform a [Homo sapiens]
Length = 814
Score = 26.9 bits (58), Expect = 8.0
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 43 GDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRK 93
G ++AK GD+K + ++IQN + + E S ++K +KE P + K
Sbjct: 214 GYELAKDFGDFK---TQLTISIQNTRNRFEGTRSEVESLMKKMKENPLEHK 261
>gi|21687188 hypothetical protein LOC146325 [Homo sapiens]
Length = 571
Score = 26.9 bits (58), Expect = 8.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 33 GPLGLSPKKVGDDIAKATGDW 53
GP+ SP+ VG+D+ +A GD+
Sbjct: 395 GPVPGSPEHVGEDLTRALGDY 415
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,320,128
Number of Sequences: 37866
Number of extensions: 237829
Number of successful extensions: 654
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 20
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.