Guide to the Human Genome
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Name: MRPL11 Sequence: fasta or formatted (181aa) NCBI GI: 25306275
Description:

mitochondrial ribosomal protein L11 isoform c

Referenced in:

Ribosomes

Other entries for this name:
alt prot [166aa] mitochondrial ribosomal protein L11 isoform b
alt prot [192aa] mitochondrial ribosomal protein L11 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         16           3
 C cysteine            1.1          2           1
 D aspartate           2.8          5           1
 E glutamate           5.5         10           1
 F phenylalanine       2.8          5           1
 G glycine            10.5         19           2
 H histidine           0.6          1           1
 I isoleucine          8.3         15           2
 K lysine              8.8         16           1
 L leucine             7.7         14           1
 M methionine          1.7          3           1
 N asparagine          2.2          4           1
 P proline             6.1         11           2
 Q glutamine           3.3          6           1
 R arginine            8.8         16           1
 S serine              7.2         13           2
 T threonine           3.3          6           1
 V valine              9.4         17           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial ribosomal protein L11 isoform c 
MRPL11                0.859   mitochondrial ribosomal protein L11 isoform a 
MRPL11                0.660   mitochondrial ribosomal protein L11 isoform b 
RPL12                 0.021   ribosomal protein L12 
OSBPL7                0.015   oxysterol-binding protein-like protein 7 
HNRNPR                0.012   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.012   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.012   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.012   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
NCAM1                 0.009   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.009   neural cell adhesion molecule 1 isoform 2 
NCAM1                 0.009   neural cell adhesion molecule 1 isoform 3 
FAM178B               0.009   hypothetical protein LOC51252 isoform A 
GON4L                 0.009   gon-4-like isoform a 
GON4L                 0.009   gon-4-like isoform b 
LOC100291259          0.009   PREDICTED: hypothetical protein XP_002348181 
NF1                   0.009   neurofibromin isoform 1 
NF1                   0.009   neurofibromin isoform 2 
STAG3                 0.009   stromal antigen 3 
CNN2                  0.009   calponin 2 isoform a 
CIT                   0.006   citron 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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