Guide to the Human Genome
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Name: OGFOD2 Sequence: fasta or formatted (290aa) NCBI GI: 13375846
Description:

2-oxoglutarate and iron-dependent oxygenase domain containing 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         25           2
 C cysteine            2.4          7           2
 D aspartate           5.2         15           2
 E glutamate           9.7         28           2
 F phenylalanine       3.8         11           1
 G glycine             8.6         25           3
 H histidine           2.8          8           1
 I isoleucine          0.7          2           1
 K lysine              2.1          6           1
 L leucine            14.1         41           2
 M methionine          2.1          6           1
 N asparagine          2.4          7           2
 P proline             6.6         19           1
 Q glutamine           4.1         12           1
 R arginine            6.9         20           2
 S serine              3.8         11           2
 T threonine           4.5         13           1
 V valine              7.9         23           2
 W tryptophan          0.7          2           1
 Y tyrosine            3.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   2-oxoglutarate and iron-dependent oxygenase domain c... 
PLOD1                 0.056   lysyl hydroxylase 1 precursor 
PLOD3                 0.037   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 pr...
PLOD2                 0.034   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i...
PLOD2                 0.034   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i...
CAMSAP1L1             0.014   calmodulin regulated spectrin-associated protein 1-l...
DOPEY2                0.009   pad-1-like 
ERC1                  0.009   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.009   RAB6-interacting protein 2 isoform delta 
AMDHD2                0.007   amidohydrolase domain containing 2 isoform 2 
AMDHD2                0.007   amidohydrolase domain containing 2 isoform 1 
LOC100288069          0.005   PREDICTED: hypothetical protein XP_002342058 
ZDHHC19               0.005   zinc finger, DHHC domain containing 19 
HEATR1                0.005   protein BAP28 
LOC100133305          0.005   PREDICTED: hypothetical protein 
LOC100133305          0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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