Search of human proteins with 4505727

Search of human proteins with 4505727

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505727 peroxisomal biogenesis factor 3 [Homo sapiens]
         (373 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4505727 peroxisomal biogenesis factor 3 [Homo sapiens]             735   0.0  
gi|31083243 gamma isoform of regulatory subunit B56, protein pho...    34   0.24 
gi|240849359 gamma isoform of regulatory subunit B56, protein ph...    34   0.24 
gi|240849353 gamma isoform of regulatory subunit B56, protein ph...    34   0.24 
gi|31083236 gamma isoform of regulatory subunit B56, protein pho...    34   0.24 
gi|31083259 gamma isoform of regulatory subunit B56, protein pho...    34   0.24 
gi|22538495 UDP-GalNAc:polypeptide N-acetylgalactosaminyltransfe...    34   0.24 
gi|31083288 delta isoform of regulatory subunit B56, protein pho...    34   0.24 
gi|31083280 delta isoform of regulatory subunit B56, protein pho...    34   0.24 
gi|5453954 delta isoform of regulatory subunit B56, protein phos...    34   0.24 
gi|45439327 periplakin [Homo sapiens]                                  32   0.71 
gi|40549454 T-cell leukemia virus enhancer factor [Homo sapiens]       31   1.6  
gi|21362112 limb region 1 protein [Homo sapiens]                       31   2.1  
gi|169790926 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...    31   2.1  
gi|126090663 zinc finger homeodomain 4 [Homo sapiens]                  30   3.5  
gi|109148531 coiled-coil domain containing 98 [Homo sapiens]           29   6.0  
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa...    29   7.8  
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa...    29   7.8  
gi|215983098 hypothetical protein LOC63901 [Homo sapiens]              29   7.8  
gi|215983096 hypothetical protein LOC63901 [Homo sapiens]              29   7.8  
gi|215983094 hypothetical protein LOC63901 [Homo sapiens]              29   7.8  
gi|38505211 hypothetical protein LOC63901 [Homo sapiens]               29   7.8  
gi|38505209 hypothetical protein LOC63901 [Homo sapiens]               29   7.8  

>gi|4505727 peroxisomal biogenesis factor 3 [Homo sapiens]
          Length = 373

 Score =  735 bits (1898), Expect = 0.0
 Identities = 373/373 (100%), Positives = 373/373 (100%)

Query: 1   MLRSVWNFLKRHKKKCIFLGTVLGGVYILGKYGQKKIREIQEREAAEYIAQARRQYHFES 60
           MLRSVWNFLKRHKKKCIFLGTVLGGVYILGKYGQKKIREIQEREAAEYIAQARRQYHFES
Sbjct: 1   MLRSVWNFLKRHKKKCIFLGTVLGGVYILGKYGQKKIREIQEREAAEYIAQARRQYHFES 60

Query: 61  NQRTCNMTVLSMLPTLREALMQQLNSESLTALLKNRPSNKLEIWEDLKIISFTRSTVAVY 120
           NQRTCNMTVLSMLPTLREALMQQLNSESLTALLKNRPSNKLEIWEDLKIISFTRSTVAVY
Sbjct: 61  NQRTCNMTVLSMLPTLREALMQQLNSESLTALLKNRPSNKLEIWEDLKIISFTRSTVAVY 120

Query: 121 STCMLVVLLRVQLNIIGGYIYLDNAAVGKNGTTILAPPDVQQQYLSSIQHLLGDGLTELI 180
           STCMLVVLLRVQLNIIGGYIYLDNAAVGKNGTTILAPPDVQQQYLSSIQHLLGDGLTELI
Sbjct: 121 STCMLVVLLRVQLNIIGGYIYLDNAAVGKNGTTILAPPDVQQQYLSSIQHLLGDGLTELI 180

Query: 181 TVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLLCHYMMP 240
           TVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLLCHYMMP
Sbjct: 181 TVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLLCHYMMP 240

Query: 241 DEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFR 300
           DEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFR
Sbjct: 241 DEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFR 300

Query: 301 PTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCSETPSHFVQDLLTMEQVKDFAAN 360
           PTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCSETPSHFVQDLLTMEQVKDFAAN
Sbjct: 301 PTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCSETPSHFVQDLLTMEQVKDFAAN 360

Query: 361 VYEAFSTPQQLEK 373
           VYEAFSTPQQLEK
Sbjct: 361 VYEAFSTPQQLEK 373


>gi|31083243 gamma isoform of regulatory subunit B56, protein
           phosphatase 2A isoform c [Homo sapiens]
          Length = 449

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 33/163 (20%), Positives = 77/163 (47%), Gaps = 18/163 (11%)

Query: 174 DGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSW-----INKD 228
           +G+ EL+ ++   +      +  +H + LL +   L ++++L   H   ++     + KD
Sbjct: 219 NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD 278

Query: 229 GS--KPLLCHYMMPDEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLNTCLNR 286
            +  +P++   +    +T         SP+++  +  L E  D++E  +F  ++   L R
Sbjct: 279 STLTEPVVMALLKYWPKTH--------SPKEVMFLNELEEILDVIEPSEFVKIMEP-LFR 329

Query: 287 GFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIV 329
             ++ + +    F+  E+ L + N+   +S +S   AKI+PI+
Sbjct: 330 QLAKCVSS--PHFQVAERALYYWNNEYIMSLISDNAAKILPIM 370


>gi|240849359 gamma isoform of regulatory subunit B56, protein
           phosphatase 2A isoform f [Homo sapiens]
          Length = 540

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 33/163 (20%), Positives = 77/163 (47%), Gaps = 18/163 (11%)

Query: 174 DGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSW-----INKD 228
           +G+ EL+ ++   +      +  +H + LL +   L ++++L   H   ++     + KD
Sbjct: 274 NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD 333

Query: 229 GS--KPLLCHYMMPDEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLNTCLNR 286
            +  +P++   +    +T         SP+++  +  L E  D++E  +F  ++   L R
Sbjct: 334 STLTEPVVMALLKYWPKTH--------SPKEVMFLNELEEILDVIEPSEFVKIMEP-LFR 384

Query: 287 GFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIV 329
             ++ + +    F+  E+ L + N+   +S +S   AKI+PI+
Sbjct: 385 QLAKCVSS--PHFQVAERALYYWNNEYIMSLISDNAAKILPIM 425


>gi|240849353 gamma isoform of regulatory subunit B56, protein
           phosphatase 2A isoform e [Homo sapiens]
          Length = 555

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 33/163 (20%), Positives = 77/163 (47%), Gaps = 18/163 (11%)

Query: 174 DGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSW-----INKD 228
           +G+ EL+ ++   +      +  +H + LL +   L ++++L   H   ++     + KD
Sbjct: 250 NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD 309

Query: 229 GS--KPLLCHYMMPDEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLNTCLNR 286
            +  +P++   +    +T         SP+++  +  L E  D++E  +F  ++   L R
Sbjct: 310 STLTEPVVMALLKYWPKTH--------SPKEVMFLNELEEILDVIEPSEFVKIMEP-LFR 360

Query: 287 GFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIV 329
             ++ + +    F+  E+ L + N+   +S +S   AKI+PI+
Sbjct: 361 QLAKCVSS--PHFQVAERALYYWNNEYIMSLISDNAAKILPIM 401


>gi|31083236 gamma isoform of regulatory subunit B56, protein
           phosphatase 2A isoform b [Homo sapiens]
          Length = 485

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 33/163 (20%), Positives = 77/163 (47%), Gaps = 18/163 (11%)

Query: 174 DGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSW-----INKD 228
           +G+ EL+ ++   +      +  +H + LL +   L ++++L   H   ++     + KD
Sbjct: 219 NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD 278

Query: 229 GS--KPLLCHYMMPDEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLNTCLNR 286
            +  +P++   +    +T         SP+++  +  L E  D++E  +F  ++   L R
Sbjct: 279 STLTEPVVMALLKYWPKTH--------SPKEVMFLNELEEILDVIEPSEFVKIMEP-LFR 329

Query: 287 GFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIV 329
             ++ + +    F+  E+ L + N+   +S +S   AKI+PI+
Sbjct: 330 QLAKCVSS--PHFQVAERALYYWNNEYIMSLISDNAAKILPIM 370


>gi|31083259 gamma isoform of regulatory subunit B56, protein
           phosphatase 2A isoform a [Homo sapiens]
          Length = 524

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 33/163 (20%), Positives = 77/163 (47%), Gaps = 18/163 (11%)

Query: 174 DGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSW-----INKD 228
           +G+ EL+ ++   +      +  +H + LL +   L ++++L   H   ++     + KD
Sbjct: 219 NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD 278

Query: 229 GS--KPLLCHYMMPDEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLNTCLNR 286
            +  +P++   +    +T         SP+++  +  L E  D++E  +F  ++   L R
Sbjct: 279 STLTEPVVMALLKYWPKTH--------SPKEVMFLNELEEILDVIEPSEFVKIMEP-LFR 329

Query: 287 GFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIV 329
             ++ + +    F+  E+ L + N+   +S +S   AKI+PI+
Sbjct: 330 QLAKCVSS--PHFQVAERALYYWNNEYIMSLISDNAAKILPIM 370


>gi|22538495 UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase-like 3 [Homo sapiens]
          Length = 598

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 13/66 (19%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 292 LDNMAEFFRPTE-QDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCSETPSHFVQDLLT 350
           LD     +RPT+ ++L++   +  +S + + + + + ++   +HS  + TP+H +++++ 
Sbjct: 130 LDRSIPDYRPTKCKELKYSKDLPQISIIFIFVNEALSVILRSVHSAVNHTPTHLLKEIIL 189

Query: 351 MEQVKD 356
           ++   D
Sbjct: 190 VDDNSD 195


>gi|31083288 delta isoform of regulatory subunit B56, protein
           phosphatase 2A isoform 3 [Homo sapiens]
          Length = 496

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 22/165 (13%)

Query: 174 DGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPL 233
           +G+ EL+        ++LGS+    +L L + E K+  IR L+  HK  S ++    +  
Sbjct: 189 NGIAELL--------EILGSIINGFALPLKE-EHKMFLIRVLLPLHKVKS-LSVYHPQLA 238

Query: 234 LCHYMMPDEETPLAVQAC-GL--------SPRDITTIKLLNETRDMLESPDFSTVLNTCL 284
            C     ++E+ L      GL        SP+++  +  L E  D++E  +FS V+   L
Sbjct: 239 YCVVQFLEKESSLTEPVIVGLLKFWPKTHSPKEVMFLNELEEILDVIEPSEFSKVMEP-L 297

Query: 285 NRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIV 329
            R  ++ +   +  F+  E+ L + N+   +S +S   A+++PI+
Sbjct: 298 FRQLAKCVS--SPHFQVAERALYYWNNEYIMSLISDNAARVLPIM 340


>gi|31083280 delta isoform of regulatory subunit B56, protein
           phosphatase 2A isoform 2 [Homo sapiens]
          Length = 570

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 22/165 (13%)

Query: 174 DGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPL 233
           +G+ EL+        ++LGS+    +L L + E K+  IR L+  HK  S ++    +  
Sbjct: 263 NGIAELL--------EILGSIINGFALPLKE-EHKMFLIRVLLPLHKVKS-LSVYHPQLA 312

Query: 234 LCHYMMPDEETPLAVQAC-GL--------SPRDITTIKLLNETRDMLESPDFSTVLNTCL 284
            C     ++E+ L      GL        SP+++  +  L E  D++E  +FS V+   L
Sbjct: 313 YCVVQFLEKESSLTEPVIVGLLKFWPKTHSPKEVMFLNELEEILDVIEPSEFSKVMEP-L 371

Query: 285 NRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIV 329
            R  ++ +   +  F+  E+ L + N+   +S +S   A+++PI+
Sbjct: 372 FRQLAKCVS--SPHFQVAERALYYWNNEYIMSLISDNAARVLPIM 414


>gi|5453954 delta isoform of regulatory subunit B56, protein
           phosphatase 2A isoform 1 [Homo sapiens]
          Length = 602

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 22/165 (13%)

Query: 174 DGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPL 233
           +G+ EL+        ++LGS+    +L L + E K+  IR L+  HK  S ++    +  
Sbjct: 295 NGIAELL--------EILGSIINGFALPLKE-EHKMFLIRVLLPLHKVKS-LSVYHPQLA 344

Query: 234 LCHYMMPDEETPLAVQAC-GL--------SPRDITTIKLLNETRDMLESPDFSTVLNTCL 284
            C     ++E+ L      GL        SP+++  +  L E  D++E  +FS V+   L
Sbjct: 345 YCVVQFLEKESSLTEPVIVGLLKFWPKTHSPKEVMFLNELEEILDVIEPSEFSKVMEP-L 403

Query: 285 NRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIV 329
            R  ++ +   +  F+  E+ L + N+   +S +S   A+++PI+
Sbjct: 404 FRQLAKCVS--SPHFQVAERALYYWNNEYIMSLISDNAARVLPIM 446


>gi|45439327 periplakin [Homo sapiens]
          Length = 1756

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 25/157 (15%)

Query: 168 IQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSW--- 224
           IQ L G G T L+    +   +       +H L LLDL Q+  ++ N +E+    SW   
Sbjct: 574 IQALPGSGTTPLLRTRVEDTNR-----KYEHLLQLLDLAQEKVDVANRLEKSLQQSWELL 628

Query: 225 ------INKDGSKPLLCHYMMPDEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFST 278
                 +N+D + P     ++  +   LA  AC L  +      LL E    L++     
Sbjct: 629 ATHENHLNQDDTVPESSR-VLDSKGQELAAMACELQAQK----SLLGEVEQNLQA----- 678

Query: 279 VLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSL 315
               C +   SR  ++  +  R   +  + G   N+L
Sbjct: 679 -AKQCSSTLASRFQEHCPDLERQEAEVHKLGQRFNNL 714


>gi|40549454 T-cell leukemia virus enhancer factor [Homo sapiens]
          Length = 431

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 6/130 (4%)

Query: 195 SLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLLCHYMMPDEETPLAVQACGLS 254
           S++H+LSL    QK++     V   K S W      KP L   +     +  + Q   LS
Sbjct: 159 SVRHNLSLNKCFQKVERSHGKVNG-KGSLWCVDPEYKPNLIQALKKQPFSSASSQNGSLS 217

Query: 255 PRDITTIKLLNETRDMLESPDFST----VLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGN 310
           P  ++++   N+ R++ ES   +     +LNT + +G     +         ++   +GN
Sbjct: 218 PHYLSSVIKQNQVRNLKESDIDAAAAMMLLNTSIEQGILE-CEKPLPLKTALQKKRSYGN 276

Query: 311 SMNSLSSVSL 320
           + +  S+V L
Sbjct: 277 AFHHPSAVRL 286


>gi|21362112 limb region 1 protein [Homo sapiens]
          Length = 490

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 17/78 (21%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 179 LITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNL---VEQHKSSSWINKDGSKPLLC 235
           +IT+ ++A+Q+ L  +S     ++++LEQ+L+ ++ L   +E+ K +S   ++   P + 
Sbjct: 239 IITLEEEALQRRLNGLSSSVEYNIMELEQELENVKTLKTKLERRKKASAWERNLVYPAVM 298

Query: 236 HYMMPDEETPLAVQACGL 253
             ++ +    + + AC +
Sbjct: 299 VLLLIETSISVLLVACNI 316


>gi|169790926 UDP-N-acetyl-alpha-D-galactosamine:polypeptide
           N-acetylgalactosaminyltransferase 9 isoform A [Homo
           sapiens]
          Length = 603

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 292 LDNMAEFFRPTE-QDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCSETPSHFVQDLLT 350
           LD     +RP + + + +   +  +S V + + + + ++   +HSV + TPS  +++++ 
Sbjct: 129 LDRSIPDYRPRKCRQMSYAQDLPQVSVVFIFVNEALSVILRSVHSVVNHTPSQLLKEVIL 188

Query: 351 MEQVKDFAANVYEAFSTPQQLEK 373
           ++   D   NV   F+  Q + K
Sbjct: 189 VDDNSD---NVELKFNLDQYVNK 208


>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
          Length = 3571

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 16/124 (12%)

Query: 175 GLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLL 234
           GL+ L+      V   + SVSL HS S      + K+  N  E+ K S+ ++ +G  P+ 
Sbjct: 410 GLSSLV------VNTPITSVSLSHSSSESSKMSESKDQENNCERPKESNVLHPNGECPVK 463

Query: 235 CHYMMPDEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLNTCLNRGFSRLLDN 294
                P +E      +  L   ++     L E  D + + DF       LN+  S L  +
Sbjct: 464 SEPTEPGDEDEEDAYSNELDDEEV-----LGELTDSIGNKDF-----PLLNQSISPLSSS 513

Query: 295 MAEF 298
           + +F
Sbjct: 514 VLKF 517


>gi|109148531 coiled-coil domain containing 98 [Homo sapiens]
          Length = 409

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 25/220 (11%)

Query: 115 STVAVYSTCMLVVLLRVQLNIIG---GYIYLDNAAVGKNGTTILAPPDVQQQYLSSIQ-- 169
           ST AV S  +L  L    LN      G++  +     KN  T     DV+  Y   IQ  
Sbjct: 5   STSAVLSGFVLGALAFQHLNTDSDTEGFLLGEVKGEAKNSITDSQMDDVEVVYTIDIQKY 64

Query: 170 ---HLLGDGLTELITVIKQAVQKVLGSVSL---------KHSLSLLDLEQKLKEIRNLVE 217
              + L         V +QA++K+L +V           +HS  ++   ++L  +   ++
Sbjct: 65  IPCYQLFSFYNSSGEVNEQALKKILSNVKKNVVGWYKFRRHSDQIMTFRERL--LHKNLQ 122

Query: 218 QHKSSSWINKDGSKPLLCHYMMPDEETPLAVQACGLSPRD--ITTIKLLNETRDMLESPD 275
           +H S    N+D    LL   ++ +  +   ++     P+      + L+     M E   
Sbjct: 123 EHFS----NQDLVFLLLTPSIITESCSTHRLEHSLYKPQKGLFHRVPLVVANLGMSEQLG 178

Query: 276 FSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSL 315
           + TV  +C++ GFSR +   +  F   +  L+  + +N +
Sbjct: 179 YKTVSGSCMSTGFSRAVQTHSSKFFEEDGSLKEVHKINEM 218


>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
            sapiens]
          Length = 1690

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 19/93 (20%)

Query: 25   GVYILGKYGQKKIREIQEREAAEYIAQARRQYHFESNQRTCNMTVLSMLPTLREALMQQL 84
            GVY  GK  +KK++E+ E+E  + +                    L  L  L E L +  
Sbjct: 1081 GVYGSGKNRRKKVKELIEKEKEKDLD-------------------LEPLSDLEEGLEETR 1121

Query: 85   NSESLTALLKNRPSNKLEIWEDLKIISFTRSTV 117
            ++  + A+ K R   ++E    L+  +  + T+
Sbjct: 1122 DTAMVVAVFKEREQKEIEAMHSLRAANLAKMTM 1154


>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
            sapiens]
          Length = 1641

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 19/93 (20%)

Query: 25   GVYILGKYGQKKIREIQEREAAEYIAQARRQYHFESNQRTCNMTVLSMLPTLREALMQQL 84
            GVY  GK  +KK++E+ E+E  + +                    L  L  L E L +  
Sbjct: 1081 GVYGSGKNRRKKVKELIEKEKEKDLD-------------------LEPLSDLEEGLEETR 1121

Query: 85   NSESLTALLKNRPSNKLEIWEDLKIISFTRSTV 117
            ++  + A+ K R   ++E    L+  +  + T+
Sbjct: 1122 DTAMVVAVFKEREQKEIEAMHSLRAANLAKMTM 1154


>gi|215983098 hypothetical protein LOC63901 [Homo sapiens]
          Length = 611

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 19/134 (14%)

Query: 76  LREALMQQ---LNSESLTALLKNRPSNKLEIWEDL-KIISFTRSTVAVYSTCMLVVLLRV 131
           LRE ++ Q   L  ES   +   +   K++  E L ++   T   V   S+ + VV L V
Sbjct: 292 LREQIVAQYPSLKRESEKIIENFKKKMKVKNGETLFELHRTTFGKVTKNSSSIKVVKLLV 351

Query: 132 QLNIIGGYIYLDNAAVGK------NGTTILAPPDVQQQYLSSIQHLLGDGL--TELITVI 183
           +L+   GY++ D+A  G        G  IL    V       I  ++GDG+  ++  T+I
Sbjct: 352 RLSDSVGYLFWDSATTGYATCFVFKGLFILTCRHV-------IDSIVGDGIEPSKWATII 404

Query: 184 KQAVQKVLGSVSLK 197
            Q V+   G   LK
Sbjct: 405 GQCVRVTFGYEELK 418


>gi|215983096 hypothetical protein LOC63901 [Homo sapiens]
          Length = 611

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 19/134 (14%)

Query: 76  LREALMQQ---LNSESLTALLKNRPSNKLEIWEDL-KIISFTRSTVAVYSTCMLVVLLRV 131
           LRE ++ Q   L  ES   +   +   K++  E L ++   T   V   S+ + VV L V
Sbjct: 292 LREQIVAQYPSLKRESEKIIENFKKKMKVKNGETLFELHRTTFGKVTKNSSSIKVVKLLV 351

Query: 132 QLNIIGGYIYLDNAAVGK------NGTTILAPPDVQQQYLSSIQHLLGDGL--TELITVI 183
           +L+   GY++ D+A  G        G  IL    V       I  ++GDG+  ++  T+I
Sbjct: 352 RLSDSVGYLFWDSATTGYATCFVFKGLFILTCRHV-------IDSIVGDGIEPSKWATII 404

Query: 184 KQAVQKVLGSVSLK 197
            Q V+   G   LK
Sbjct: 405 GQCVRVTFGYEELK 418


>gi|215983094 hypothetical protein LOC63901 [Homo sapiens]
          Length = 611

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 19/134 (14%)

Query: 76  LREALMQQ---LNSESLTALLKNRPSNKLEIWEDL-KIISFTRSTVAVYSTCMLVVLLRV 131
           LRE ++ Q   L  ES   +   +   K++  E L ++   T   V   S+ + VV L V
Sbjct: 292 LREQIVAQYPSLKRESEKIIENFKKKMKVKNGETLFELHRTTFGKVTKNSSSIKVVKLLV 351

Query: 132 QLNIIGGYIYLDNAAVGK------NGTTILAPPDVQQQYLSSIQHLLGDGL--TELITVI 183
           +L+   GY++ D+A  G        G  IL    V       I  ++GDG+  ++  T+I
Sbjct: 352 RLSDSVGYLFWDSATTGYATCFVFKGLFILTCRHV-------IDSIVGDGIEPSKWATII 404

Query: 184 KQAVQKVLGSVSLK 197
            Q V+   G   LK
Sbjct: 405 GQCVRVTFGYEELK 418


>gi|38505211 hypothetical protein LOC63901 [Homo sapiens]
          Length = 611

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 19/134 (14%)

Query: 76  LREALMQQ---LNSESLTALLKNRPSNKLEIWEDL-KIISFTRSTVAVYSTCMLVVLLRV 131
           LRE ++ Q   L  ES   +   +   K++  E L ++   T   V   S+ + VV L V
Sbjct: 292 LREQIVAQYPSLKRESEKIIENFKKKMKVKNGETLFELHRTTFGKVTKNSSSIKVVKLLV 351

Query: 132 QLNIIGGYIYLDNAAVGK------NGTTILAPPDVQQQYLSSIQHLLGDGL--TELITVI 183
           +L+   GY++ D+A  G        G  IL    V       I  ++GDG+  ++  T+I
Sbjct: 352 RLSDSVGYLFWDSATTGYATCFVFKGLFILTCRHV-------IDSIVGDGIEPSKWATII 404

Query: 184 KQAVQKVLGSVSLK 197
            Q V+   G   LK
Sbjct: 405 GQCVRVTFGYEELK 418


>gi|38505209 hypothetical protein LOC63901 [Homo sapiens]
          Length = 611

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 19/134 (14%)

Query: 76  LREALMQQ---LNSESLTALLKNRPSNKLEIWEDL-KIISFTRSTVAVYSTCMLVVLLRV 131
           LRE ++ Q   L  ES   +   +   K++  E L ++   T   V   S+ + VV L V
Sbjct: 292 LREQIVAQYPSLKRESEKIIENFKKKMKVKNGETLFELHRTTFGKVTKNSSSIKVVKLLV 351

Query: 132 QLNIIGGYIYLDNAAVGK------NGTTILAPPDVQQQYLSSIQHLLGDGL--TELITVI 183
           +L+   GY++ D+A  G        G  IL    V       I  ++GDG+  ++  T+I
Sbjct: 352 RLSDSVGYLFWDSATTGYATCFVFKGLFILTCRHV-------IDSIVGDGIEPSKWATII 404

Query: 184 KQAVQKVLGSVSLK 197
            Q V+   G   LK
Sbjct: 405 GQCVRVTFGYEELK 418


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,156,928
Number of Sequences: 37866
Number of extensions: 539382
Number of successful extensions: 1573
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1569
Number of HSP's gapped (non-prelim): 25
length of query: 373
length of database: 18,247,518
effective HSP length: 104
effective length of query: 269
effective length of database: 14,309,454
effective search space: 3849243126
effective search space used: 3849243126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.