Guide to the Human Genome
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Name: MDK Sequence: fasta or formatted (143aa) NCBI GI: 4505135
Description:

midkine

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt mRNA [143aa] midkine
alt mRNA [143aa] midkine
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         14           1
 C cysteine            7.0         10           1
 D aspartate           3.5          5           1
 E glutamate           4.2          6           1
 F phenylalanine       2.8          4           1
 G glycine            11.9         17           2
 H histidine           0.7          1           1
 I isoleucine          1.4          2           1
 K lysine             16.1         23           3
 L leucine             6.3          9           3
 M methionine          0.7          1           1
 N asparagine          2.1          3           1
 P proline             4.2          6           1
 Q glutamine           4.2          6           1
 R arginine            5.6          8           1
 S serine              2.8          4           2
 T threonine           8.4         12           1
 V valine              4.2          6           1
 W tryptophan          2.8          4           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   midkine 
MDK                   1.000   midkine 
MDK                   1.000   midkine 
PTN                   0.433   pleiotrophin 
LOC100130825          0.028   PREDICTED: hypothetical protein 
PEAR1                 0.025   platelet endothelial aggregation receptor 1 
SSPO                  0.025   SCO-spondin 
ADAMTS9               0.025   ADAM metallopeptidase with thrombospondin type 1 mot...
C6                    0.025   complement component 6 precursor 
C6                    0.025   complement component 6 precursor 
ADAMTS15              0.021   a disintegrin-like and metalloprotease (reprolysin t...
ADAMTS17              0.018   ADAM metallopeptidase with thrombospondin type 1 mo...
KRTAP5-1              0.018   keratin associated protein 5-1 
RSPO3                 0.014   R-spondin 3 
SPON1                 0.014   spondin 1, extracellular matrix protein 
SEMA5A                0.014   semaphorin 5A 
SEMA5B                0.011   semaphorin 5B isoform 1 
ADAMTS19              0.011   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS13              0.011   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.011   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.011   ADAM metallopeptidase with thrombospondin type 1 mot...
RSPO1                 0.011   R-spondin1 
LOC100132515          0.011   PREDICTED: similar to hCG2045429 
LOC729983             0.011   PREDICTED: hypothetical protein 
LOC100132515          0.011   PREDICTED: similar to hCG2045429 
LOC100132515          0.011   PREDICTED: similar to hCG2045429 
THSD4                 0.011   thrombospondin, type I, domain containing 4 
ZNF776                0.011   zinc finger protein 776 
BHLHB9                0.011   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.011   basic helix-loop-helix domain containing, class B, ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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