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Search of human proteins with 4504651
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504651 interleukin 17A precursor [Homo sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504651 interleukin 17A precursor [Homo sapiens] 329 7e-91
gi|16418375 interleukin 17F precursor [Homo sapiens] 126 7e-30
gi|7019435 interleukin 17C [Homo sapiens] 62 2e-10
gi|7657228 interleukin 17B precursor [Homo sapiens] 55 2e-08
gi|19923715 interleukin 17D precursor [Homo sapiens] 53 1e-07
gi|12232485 interleukin 25 isoform 1 precursor [Homo sapiens] 39 0.002
gi|27477081 interleukin 25 isoform 2 [Homo sapiens] 38 0.003
gi|157364974 sucrase-isomaltase [Homo sapiens] 30 0.64
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens] 30 0.64
gi|212549782 caspase 8 associated protein 2 [Homo sapiens] 28 2.4
gi|6912288 caspase 8 associated protein 2 [Homo sapiens] 28 2.4
gi|212549532 caspase 8 associated protein 2 [Homo sapiens] 28 2.4
gi|18379328 WW domain-containing adapter with a coiled-coil regi... 28 2.4
gi|18379332 WW domain-containing adapter with a coiled-coil regi... 28 2.4
gi|221316760 L1 cell adhesion molecule isoform 3 precursor [Homo... 28 4.1
gi|13435353 L1 cell adhesion molecule isoform 2 precursor [Homo ... 28 4.1
gi|4557707 L1 cell adhesion molecule isoform 1 precursor [Homo s... 28 4.1
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens] 27 5.4
gi|242332527 hypothetical protein LOC65250 [Homo sapiens] 27 7.0
gi|57242761 receptor (TNFRSF)-interacting serine-threonine kinas... 27 9.2
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 27 9.2
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 27 9.2
gi|6453813 butyrophilin, subfamily 2, member A2 isoform a [Homo ... 27 9.2
>gi|4504651 interleukin 17A precursor [Homo sapiens]
Length = 155
Score = 329 bits (843), Expect = 7e-91
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MTPGKTSLVSLLLLLSLEAIVKAGITIPRNPGCPNSEDKNFPRTVMVNLNIHNRNTNTNP 60
MTPGKTSLVSLLLLLSLEAIVKAGITIPRNPGCPNSEDKNFPRTVMVNLNIHNRNTNTNP
Sbjct: 1 MTPGKTSLVSLLLLLSLEAIVKAGITIPRNPGCPNSEDKNFPRTVMVNLNIHNRNTNTNP 60
Query: 61 KRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNSVPIQQEIL 120
KRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNSVPIQQEIL
Sbjct: 61 KRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNSVPIQQEIL 120
Query: 121 VLRREPPHCPNSFRLEKILVSVGCTCVTPIVHHVA 155
VLRREPPHCPNSFRLEKILVSVGCTCVTPIVHHVA
Sbjct: 121 VLRREPPHCPNSFRLEKILVSVGCTCVTPIVHHVA 155
>gi|16418375 interleukin 17F precursor [Homo sapiens]
Length = 163
Score = 126 bits (317), Expect = 7e-30
Identities = 61/108 (56%), Positives = 76/108 (70%)
Query: 47 VNLNIHNRNTNTNPKRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNV 106
+ L+I N N S + +RSTSPWN DP RYPS + +A+CR+LGCINA G
Sbjct: 55 MKLDIGIINENQRVSMSRNIESRSTSPWNYTVTWDPNRYPSEVVQAQCRNLGCINAQGKE 114
Query: 107 DYHMNSVPIQQEILVLRREPPHCPNSFRLEKILVSVGCTCVTPIVHHV 154
D MNSVPIQQE LV+RR+ C SF+LEK+LV+VGCTCVTP++HHV
Sbjct: 115 DISMNSVPIQQETLVVRRKHQGCSVSFQLEKVLVTVGCTCVTPVIHHV 162
>gi|7019435 interleukin 17C [Homo sapiens]
Length = 197
Score = 62.4 bits (150), Expect = 2e-10
Identities = 39/96 (40%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 64 SDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINA-DGNVDYHMNSVPIQQEILVL 122
+D + RS SPW + D +RYP + A+C GCI+A G +NSV + Q +LVL
Sbjct: 99 ADTHQRSISPWRYRVDTDEDRYPQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVL 158
Query: 123 RREPPHCPNS---------FRLEKILVSVGCTCVTP 149
RR P S F E I V VGCTCV P
Sbjct: 159 RRRPCSRDGSGLPTPGAFAFHTEFIHVPVGCTCVLP 194
>gi|7657228 interleukin 17B precursor [Homo sapiens]
Length = 180
Score = 55.1 bits (131), Expect = 2e-08
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 69 RSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINA-DGNVDYHMNSVPIQQEILVLRR--E 125
RS SPW N DP R P + EA+C LGC+N D M SVP+ ++ V RR
Sbjct: 96 RSLSPWGYSINHDPSRIPVDLPEARCLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCP 155
Query: 126 PPHCPNSFRLEKIL--VSVGCTCV 147
PP R ++ ++VGCTC+
Sbjct: 156 PPPRTGPCRQRAVMETIAVGCTCI 179
>gi|19923715 interleukin 17D precursor [Homo sapiens]
Length = 202
Score = 52.8 bits (125), Expect = 1e-07
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 69 RSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINA-DGNVDYHMNSVPIQQEILVLRREPP 127
RS SPW + DP RYP + EA C GC+ G D S P+ +VLRR P
Sbjct: 89 RSVSPWAYRISYDPARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRRTPA 148
Query: 128 HCPNS---FRLEKILVSVGCTCV 147
C + + + VGCTCV
Sbjct: 149 -CAGGRSVYTEAYVTIPVGCTCV 170
>gi|12232485 interleukin 25 isoform 1 precursor [Homo sapiens]
Length = 177
Score = 38.5 bits (88), Expect = 0.002
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 6 TSLVSLLL-LLSLEAIVKAGITIPRNPGCPNSEDKNFPRTVM-------VNLNIHNRNTN 57
+SL+SL L +++ A+V T P C S+ ++ ++ L N +
Sbjct: 11 SSLISLFLQVVAFLAMVMGTHTYSHWPSCCPSKGQDTSEELLRWSTVPVPPLEPARPNRH 70
Query: 58 TNPKRSSD---YYNRSTSPWNLHRNEDPERYPSVIWEAK--CRHLGCINADGNVDYHMNS 112
R+S+ +R+ SPW + D R P ++ A+ C H + ++D NS
Sbjct: 71 PESCRASEDGPLNSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNS 130
Query: 113 VPIQQEILVLRREPPH----CPNSFRLEKIL--VSVGCTCVTPIV 151
+ V R P H + LE+ L VS+ C CV P V
Sbjct: 131 ELLYHNQTVFYRRPCHGEKGTHKGYCLERRLYRVSLACVCVRPRV 175
>gi|27477081 interleukin 25 isoform 2 [Homo sapiens]
Length = 161
Score = 38.1 bits (87), Expect = 0.003
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 68 NRSTSPWNLHRNEDPERYPSVIWEAK--CRHLGCINADGNVDYHMNSVPIQQEILVLRRE 125
+R+ SPW + D R P ++ A+ C H + ++D NS + V R
Sbjct: 68 SRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQTVFYRR 127
Query: 126 PPH----CPNSFRLEKIL--VSVGCTCVTPIV 151
P H + LE+ L VS+ C CV P V
Sbjct: 128 PCHGEKGTHKGYCLERRLYRVSLACVCVRPRV 159
>gi|157364974 sucrase-isomaltase [Homo sapiens]
Length = 1827
Score = 30.4 bits (67), Expect = 0.64
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 7 SLVSLLLLLSLEAIVKAGITIPRNPGCPN-SEDKNFPRTVMVNLNIHNRNTNTNPKRSSD 65
SL+ L +++++ AI + + P S+ + P T V TNP S
Sbjct: 12 SLIVLFVIVTIIAIALIVVLATKTPAVDEISDSTSTPATTRVT---------TNPSDSGK 62
Query: 66 YYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGC 99
N P N+ N PE++P+ E C GC
Sbjct: 63 CPNVLNDPVNVRINCIPEQFPT---EGICAQRGC 93
>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
Length = 1417
Score = 30.4 bits (67), Expect = 0.64
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 63 SSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLG----CINADGNVDYHMNSVPIQQE 118
SSDYYN+ +L N R+ I E + LG ++ N DY N P + E
Sbjct: 123 SSDYYNKDNEEESLLANVASLRHELKITEWSLQSLGEELSSVSPSENSDYAPN--PSRSE 180
Query: 119 ILVLRREPPH 128
L+L +P H
Sbjct: 181 KLILDVQPSH 190
>gi|212549782 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 28.5 bits (62), Expect = 2.4
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 53 NRNTNTNPKRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNS 112
N + + KRS D NR L ++EDP Y S++ GC ++ N NS
Sbjct: 1173 NAQYSNSQKRSVDNSNRELLKEKLSKSEDPVHYKSLV--------GCKKSEENYQDQNNS 1224
>gi|6912288 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 28.5 bits (62), Expect = 2.4
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 53 NRNTNTNPKRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNS 112
N + + KRS D NR L ++EDP Y S++ GC ++ N NS
Sbjct: 1173 NAQYSNSQKRSVDNSNRELLKEKLSKSEDPVHYKSLV--------GCKKSEENYQDQNNS 1224
>gi|212549532 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 28.5 bits (62), Expect = 2.4
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 53 NRNTNTNPKRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNS 112
N + + KRS D NR L ++EDP Y S++ GC ++ N NS
Sbjct: 1173 NAQYSNSQKRSVDNSNRELLKEKLSKSEDPVHYKSLV--------GCKKSEENYQDQNNS 1224
>gi|18379328 WW domain-containing adapter with a coiled-coil region
isoform 1 [Homo sapiens]
Length = 647
Score = 28.5 bits (62), Expect = 2.4
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 37 EDKNFPRTVMVNLNIHNRNTNTNPKRSSDYYNRSTSPWNLHRNEDPERY 85
++ + + + + N H+ N + NP ++SD S W+ H + ++Y
Sbjct: 98 QENSHNHSALHSSNSHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKY 146
>gi|18379332 WW domain-containing adapter with a coiled-coil region
isoform 3 [Homo sapiens]
Length = 544
Score = 28.5 bits (62), Expect = 2.4
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 37 EDKNFPRTVMVNLNIHNRNTNTNPKRSSDYYNRSTSPWNLHRNEDPERY 85
++ + + + + N H+ N + NP ++SD S W+ H + ++Y
Sbjct: 98 QENSHNHSALHSSNSHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKY 146
>gi|221316760 L1 cell adhesion molecule isoform 3 precursor [Homo
sapiens]
Length = 1248
Score = 27.7 bits (60), Expect = 4.1
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 33 CPNSEDKNFPRTVMVNLNIHNRNTNTNPKRSSDYYNRSTSPWNLHRNEDPERYPSVIWEA 92
C + D+N T+M NL + + T RS+ S + + DP PS+ W
Sbjct: 492 CLAANDQNNV-TIMANLKVKDATQITQGPRSTIEKKGSRVTFTCQASFDPSLQPSITWRG 550
Query: 93 KCRHL 97
R L
Sbjct: 551 DGRDL 555
>gi|13435353 L1 cell adhesion molecule isoform 2 precursor [Homo
sapiens]
Length = 1253
Score = 27.7 bits (60), Expect = 4.1
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 33 CPNSEDKNFPRTVMVNLNIHNRNTNTNPKRSSDYYNRSTSPWNLHRNEDPERYPSVIWEA 92
C + D+N T+M NL + + T RS+ S + + DP PS+ W
Sbjct: 497 CLAANDQNNV-TIMANLKVKDATQITQGPRSTIEKKGSRVTFTCQASFDPSLQPSITWRG 555
Query: 93 KCRHL 97
R L
Sbjct: 556 DGRDL 560
>gi|4557707 L1 cell adhesion molecule isoform 1 precursor [Homo
sapiens]
Length = 1257
Score = 27.7 bits (60), Expect = 4.1
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 33 CPNSEDKNFPRTVMVNLNIHNRNTNTNPKRSSDYYNRSTSPWNLHRNEDPERYPSVIWEA 92
C + D+N T+M NL + + T RS+ S + + DP PS+ W
Sbjct: 497 CLAANDQNNV-TIMANLKVKDATQITQGPRSTIEKKGSRVTFTCQASFDPSLQPSITWRG 555
Query: 93 KCRHL 97
R L
Sbjct: 556 DGRDL 560
>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
Length = 1495
Score = 27.3 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 89 IWEAKCRHLGCINADGNVDYHMNSVPIQQEILVLRRE 125
++ + C LG N+D N+D ++ Q ++L+L +E
Sbjct: 338 LYGSSCSRLGFKNSDVNIDIQFPAIMSQPDVLLLVQE 374
>gi|242332527 hypothetical protein LOC65250 [Homo sapiens]
Length = 3197
Score = 26.9 bits (58), Expect = 7.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 22 KAGITIPRNPGCPNSEDKNFPRTVMVNLNIHNRN 55
+A IT+P P P +E++ +PR +++ ++ N
Sbjct: 2377 RASITVPSTPIQPIAEERKYPRLSLLHSHLSPEN 2410
>gi|57242761 receptor (TNFRSF)-interacting serine-threonine kinase 1
[Homo sapiens]
Length = 671
Score = 26.6 bits (57), Expect = 9.2
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 52 HNRNTNTNPKRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMN 111
H + N P SD Y+ + W + N++P Y + I E + + CI + D
Sbjct: 197 HLNDVNAKPTEKSDVYSFAVVLWAIFANKEP--YENAICEQQL--IMCIKSGNRPDVDDI 252
Query: 112 SVPIQQEILVLRR 124
+ +EI+ L +
Sbjct: 253 TEYCPREIISLMK 265
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 26.6 bits (57), Expect = 9.2
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 29 RNPGCPNSEDKNFPRTVMVNL----------NIHNRNTNTN---PKRSSDYYNRSTSPWN 75
+NPG P ++D ++VNL ++N+ NTN PK+ + S +
Sbjct: 870 QNPGFPVNKDVTLTSPLLVNLLQSDISAGHFGVNNKQNNTNANKPKKKKPPRKKKNSQQD 929
Query: 76 LHRNEDPERYPSVIWEA 92
L+ P+ P+ + EA
Sbjct: 930 LN---TPDTRPAGLEEA 943
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 26.6 bits (57), Expect = 9.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 27 IPRNPGCPNSEDK------NFPRTVMVNLNIHNRNTNTNPKRSSDYYNRSTSPWNLHRNE 80
+P + PNS ++ + P TV V H+ T + S+YYN +S + RN
Sbjct: 216 VPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTT--ESWSNYYNNHSSSNSFGRNL 273
Query: 81 DPER 84
P+R
Sbjct: 274 PPKR 277
>gi|6453813 butyrophilin, subfamily 2, member A2 isoform a [Homo
sapiens]
Length = 523
Score = 26.6 bits (57), Expect = 9.2
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 3 PGKTSLVSLLLLLSLEAIVKAGITI--PRNP 31
P L+ LLLLLSL A+V A T+ P NP
Sbjct: 12 PASLLLLLLLLLLSLCALVSAQFTVVGPANP 42
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,930,507
Number of Sequences: 37866
Number of extensions: 300973
Number of successful extensions: 572
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 551
Number of HSP's gapped (non-prelim): 23
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.