Search of human proteins with 44888831

Search of human proteins with 44888831

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|44888831 apolipoprotein B [Homo sapiens]
         (367 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|44888831 apolipoprotein B [Homo sapiens]                           763   0.0  
gi|153251865 hypothetical protein LOC84226 [Homo sapiens]              33   0.53 
gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic poly...    32   0.90 
gi|38373671 SEC24-related protein C [Homo sapiens]                     32   0.90 
gi|38373669 SEC24-related protein C [Homo sapiens]                     32   0.90 
gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic poly...    32   1.2  
gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic poly...    32   1.2  
gi|191252812 target of myb1-like 1 [Homo sapiens]                      31   1.5  
gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]        31   1.5  
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]        31   2.0  
gi|133505169 macrophage expressed gene 1 [Homo sapiens]                30   3.4  
gi|47578113 hypothetical protein LOC140699 isoform 3 [Homo sapiens]    29   7.6  
gi|114431248 hypothetical protein LOC205717 [Homo sapiens]             28   10.0 
gi|38016202 SATB homeobox 2 [Homo sapiens]                             28   10.0 
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]                  28   10.0 

>gi|44888831 apolipoprotein B [Homo sapiens]
          Length = 367

 Score =  763 bits (1970), Expect = 0.0
 Identities = 367/367 (100%), Positives = 367/367 (100%)

Query: 1   MEPIYEEYLANHGTIVKPYYWLSFSLDCSNCPYHIRTGEEARVSLTEFCQIFGFPYGTTF 60
           MEPIYEEYLANHGTIVKPYYWLSFSLDCSNCPYHIRTGEEARVSLTEFCQIFGFPYGTTF
Sbjct: 1   MEPIYEEYLANHGTIVKPYYWLSFSLDCSNCPYHIRTGEEARVSLTEFCQIFGFPYGTTF 60

Query: 61  PQTKHLTFYELKTSSGSLVQKGHASSCTGNYIHPESMLFEMNGYLDSAIYNNDSIRHIIL 120
           PQTKHLTFYELKTSSGSLVQKGHASSCTGNYIHPESMLFEMNGYLDSAIYNNDSIRHIIL
Sbjct: 61  PQTKHLTFYELKTSSGSLVQKGHASSCTGNYIHPESMLFEMNGYLDSAIYNNDSIRHIIL 120

Query: 121 YSNNSPCNEANHCCISKMYNFLITYPGITLSIYFSQLYHTEMDFPASAWNREALRSLASL 180
           YSNNSPCNEANHCCISKMYNFLITYPGITLSIYFSQLYHTEMDFPASAWNREALRSLASL
Sbjct: 121 YSNNSPCNEANHCCISKMYNFLITYPGITLSIYFSQLYHTEMDFPASAWNREALRSLASL 180

Query: 181 WPRVVLSPISGGIWHSVLHSFISGVSGSHVFQPILTGRALADRHNAYEINAITGVKPYFT 240
           WPRVVLSPISGGIWHSVLHSFISGVSGSHVFQPILTGRALADRHNAYEINAITGVKPYFT
Sbjct: 181 WPRVVLSPISGGIWHSVLHSFISGVSGSHVFQPILTGRALADRHNAYEINAITGVKPYFT 240

Query: 241 DVLLQTKRNPNTKAQEALESYPLNNAFPGQFFQMPSGQLQPNLPPDLRAPVVFVLVPLRD 300
           DVLLQTKRNPNTKAQEALESYPLNNAFPGQFFQMPSGQLQPNLPPDLRAPVVFVLVPLRD
Sbjct: 241 DVLLQTKRNPNTKAQEALESYPLNNAFPGQFFQMPSGQLQPNLPPDLRAPVVFVLVPLRD 300

Query: 301 LPPMHMGQNPNKPRNIVRHLNMPQMSFQETKDLGRLPTGRSVEIVEITEQFASSKEADEK 360
           LPPMHMGQNPNKPRNIVRHLNMPQMSFQETKDLGRLPTGRSVEIVEITEQFASSKEADEK
Sbjct: 301 LPPMHMGQNPNKPRNIVRHLNMPQMSFQETKDLGRLPTGRSVEIVEITEQFASSKEADEK 360

Query: 361 KKKKGKK 367
           KKKKGKK
Sbjct: 361 KKKKGKK 367


>gi|153251865 hypothetical protein LOC84226 [Homo sapiens]
          Length = 1984

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 283 LPPDLRAPVVFVLVPL-RDLPPMHMGQNPNKPRNIVRHLNMPQMSFQETKDLGRL---PT 338
           L PDL+ P    L P+ RD     +G  P K   I+  + +   S    KD+G L   P 
Sbjct: 197 LQPDLQVPKFVDLTPMVRDQGSKFLGLTPEKSYQILETMELLSQSRPRVKDVGELYMKPL 256

Query: 339 GRSVEIVEITEQ 350
            ++VE   IT +
Sbjct: 257 QQTVEYEGITPE 268


>gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3F isoform a [Homo sapiens]
          Length = 373

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 12/56 (21%)

Query: 125 SPCNEANHCCISKMYNFLITYPGITLSIYFSQLYHTEMDFPASAWNREALRSLASL 180
           +PC +    C++K+  FL  +P +TL+I  ++LY+         W R+  R+L  L
Sbjct: 94  TPCPD----CVAKLAEFLAEHPNVTLTISAARLYY--------YWERDYRRALCRL 137


>gi|38373671 SEC24-related protein C [Homo sapiens]
          Length = 1094

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 268 PGQFFQMPSGQLQPN---LPPDLRAPVVFVLVPLRDLPPMHMGQNP 310
           PGQ F  PS   QPN    PP    P   +  PL  LPPMH  Q P
Sbjct: 232 PGQSFGGPSVS-QPNHVSSPPQALPPGTQMTGPLGPLPPMHSPQQP 276


>gi|38373669 SEC24-related protein C [Homo sapiens]
          Length = 1094

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 268 PGQFFQMPSGQLQPN---LPPDLRAPVVFVLVPLRDLPPMHMGQNP 310
           PGQ F  PS   QPN    PP    P   +  PL  LPPMH  Q P
Sbjct: 232 PGQSFGGPSVS-QPNHVSSPPQALPPGTQMTGPLGPLPPMHSPQQP 276


>gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3G [Homo sapiens]
          Length = 384

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 13/86 (15%)

Query: 93  HPESMLFEMNGYLDSAIYNNDSIRHIILYSNNSPCNEANHCCISKMYNFLITYPGITLSI 152
           HPE   F    +      + D    +  Y + SPC +    C   M  FL   P +TL+I
Sbjct: 65  HPEMRFFHW--FSKWRKLHRDQEYEVTWYISWSPCTK----CTRDMATFLAEDPKVTLTI 118

Query: 153 YFSQLYH-TEMDFPASAWNREALRSL 177
           + ++LY+  + D+      +EALRSL
Sbjct: 119 FVARLYYFWDPDY------QEALRSL 138


>gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3B [Homo sapiens]
          Length = 382

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 12/56 (21%)

Query: 125 SPCNEANHCCISKMYNFLITYPGITLSIYFSQLYHTEMDFPASAWNREALRSLASL 180
           +PC +    C++K+  FL  +P +TL+I  ++LY+         W R+  R+L  L
Sbjct: 95  TPCPD----CVAKLAEFLSEHPNVTLTISAARLYY--------YWERDYRRALCRL 138


>gi|191252812 target of myb1-like 1 [Homo sapiens]
          Length = 476

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 5/130 (3%)

Query: 218 RALADRHNAYEINAITGVKPYFTDVLLQTKRNPNTKAQEALESYPLNNAFPGQFFQMPSG 277
           R L    N  E    T      +  LL    +P        E   +NN   G  F +PS 
Sbjct: 292 RILEQNKNQKEATNTTSEPSAPSQDLLDLSPSPRMPRATLGELNTMNNQLSGLNFSLPSS 351

Query: 278 QLQPNLPPDLRAPVVFVLVPLRDLPPMHMGQNPNKPR-----NIVRHLNMPQMSFQETKD 332
            +  NL P L   +  + +   ++PP     + N        N + H N   +     + 
Sbjct: 352 DVTNNLKPSLHPQMNLLALENTEIPPFAQRTSQNLTSSHAYDNFLEHSNSVFLQPVSLQT 411

Query: 333 LGRLPTGRSV 342
           +   P+ +S+
Sbjct: 412 IAAAPSNQSL 421


>gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]
          Length = 236

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 11/56 (19%)

Query: 125 SPCNEANHCCISKMYNFLITYPGITLSIYFSQLY-HTEMDFPASAWNREALRSLAS 179
           SPC E    C   +  FL  +PG+TL IY ++L+ H +        NR+ LR L +
Sbjct: 91  SPCWE----CSQAIREFLSRHPGVTLVIYVARLFWHMDQQ------NRQGLRDLVN 136


>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
          Length = 818

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 262 PLNNAFPGQFFQMPSGQLQPNLPPDLRAPVVFVLVPLRDLPPMHMGQNPNKPRNIVRHLN 321
           P   ++P Q + + SGQL P   P L +P VF     +  P     Q P  P      +N
Sbjct: 689 PYGLSYP-QGYSLASGQLSPAAAPPLASPSVFTSTLSKSRPTPKPRQRPTLPPPQPPTVN 747

Query: 322 MPQMSFQETK 331
           +   S Q T+
Sbjct: 748 LSASSPQSTE 757


>gi|133505169 macrophage expressed gene 1 [Homo sapiens]
          Length = 716

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 12/85 (14%)

Query: 208 SHVFQPILTGRALADRHNAYEINAITGVKPYFTDVLLQTKRNPNTKAQEALESYPLNNAF 267
           ++  Q +LT   L++R N+  + +I GV P++  + LQ  +   T    A++     +  
Sbjct: 255 NYTSQNVLTKSYLSNRTNS-RVQSIGGV-PFYPGITLQAWQQGITNHLVAID----RSGL 308

Query: 268 PGQFFQMPSGQLQPNLPPDLRAPVV 292
           P  FF      + PN+ PDL  P+V
Sbjct: 309 PLHFF------INPNMLPDLPGPLV 327


>gi|47578113 hypothetical protein LOC140699 isoform 3 [Homo sapiens]
          Length = 573

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 13/73 (17%)

Query: 7   EYLANHGTIVKPYYWLSFSLDCSNCPYHIRTGEEARVSLTEFCQIFGFPYGTTFPQTKHL 66
           E+L  H +  K +Y         NCP+ I    E  +   E CQ       TTF   K+L
Sbjct: 399 EFLELHSSAAKCFY---------NCPFRIAQVFEGFLDSNELCQFI----MTTFDTLKNL 445

Query: 67  TFYELKTSSGSLV 79
               ++ S+G L+
Sbjct: 446 KHPCIQRSAGELL 458


>gi|114431248 hypothetical protein LOC205717 [Homo sapiens]
          Length = 2245

 Score = 28.5 bits (62), Expect = 10.0
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 21/72 (29%)

Query: 237  PYFTDVLLQTKRNPNTKAQEALESYPLNNAFPGQFFQMPS--GQLQPNLPPDLRAPVVFV 294
            PYF + +     NP+T   E + S  LNN F G     P   G  QP+ P          
Sbjct: 2128 PYFPNQMFS---NPST---EKVNSGSLNNRF-GSILSPPRPVGFAQPSFP---------- 2170

Query: 295  LVPLRDLPPMHM 306
            L+P  D+PPMHM
Sbjct: 2171 LLP--DMPPMHM 2180


>gi|38016202 SATB homeobox 2 [Homo sapiens]
          Length = 733

 Score = 28.5 bits (62), Expect = 10.0
 Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 25/164 (15%)

Query: 145 YPGITLSIYFSQLYHTEMDFPASAWN----REALRSLASLWPRVVLS---PISGGIWHSV 197
           Y  +TL I        E D PA  WN    R AL+ L     +  L+   P+S  +  S+
Sbjct: 147 YHVVTLKIQLQSCSKLE-DLPAEQWNHATVRNALKELLKEMNQSTLAKECPLSQSMISSI 205

Query: 198 LHS-FISGVSGSHV---------FQPILTGRALADRHNAYEINAITGVKPYFTDVLLQT- 246
           ++S + + VS +           ++ I   R   +  + Y    + G +P     + Q  
Sbjct: 206 VNSTYYANVSATKCQEFGRWYKKYKKIKVERVERENLSDY---CVLGQRPMHLPNMNQLA 262

Query: 247 ---KRNPNTKAQEALESYPLNNAFPGQFFQMPSGQLQPNLPPDL 287
              K N  +   +   S P+ N  P     M  G L P L P L
Sbjct: 263 SLGKTNEQSPHSQIHHSTPIRNQVPALQPIMSPGLLSPQLSPQL 306


>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
          Length = 1726

 Score = 28.5 bits (62), Expect = 10.0
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 248  RNPN-TKAQEALESYPLNNAFPGQ--FFQMPSGQLQPNLPPDLRAPVVFVLVPLRDL--P 302
            +NPN T AQ A   Y    +  G   +   P+   QP   P L  P      P + +  P
Sbjct: 1575 QNPNATPAQWASSQYGYGGSGGGSSAYHVFPTPAQQPVATP-LMTPSYSYTTPSQPITTP 1633

Query: 303  PMHMGQNPNKPRNIVRHLNMPQMSFQETKDLGRLPTGRSVEIVEITEQFASSKEADEKKK 362
              H  Q    P++  +    P  S ++ +   +  +  +++  ++ EQ+   KEA+ +K+
Sbjct: 1634 QYHQLQASTTPQS-AQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQ 1692

Query: 363  KK 364
            K+
Sbjct: 1693 KQ 1694


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,693,650
Number of Sequences: 37866
Number of extensions: 677223
Number of successful extensions: 1535
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1529
Number of HSP's gapped (non-prelim): 16
length of query: 367
length of database: 18,247,518
effective HSP length: 104
effective length of query: 263
effective length of database: 14,309,454
effective search space: 3763386402
effective search space used: 3763386402
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.