Guide to the Human Genome
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Search of human proteins with 44662830

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|44662830 S-phase 2 protein isoform 1 [Homo sapiens]
         (316 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|44662828 S-phase 2 protein isoform 4 [Homo sapiens]                646   0.0  
gi|44662830 S-phase 2 protein isoform 1 [Homo sapiens]                646   0.0  
gi|44662826 S-phase 2 protein isoform 3 [Homo sapiens]                646   0.0  
gi|44662832 S-phase 2 protein isoform 2 [Homo sapiens]                503   e-143
gi|193083145 SH3 domain containing 19 isoform c [Homo sapiens]         32   0.74 
gi|24308527 stereocilin [Homo sapiens]                                 31   1.6  
gi|148612838 hypothetical protein LOC158358 [Homo sapiens]             31   1.6  
gi|212549782 caspase 8 associated protein 2 [Homo sapiens]             30   2.8  
gi|6912288 caspase 8 associated protein 2 [Homo sapiens]               30   2.8  
gi|212549532 caspase 8 associated protein 2 [Homo sapiens]             30   2.8  
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]           30   2.8  
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]           30   2.8  
gi|145309324 FH2 domain containing 1 [Homo sapiens]                    29   4.8  
gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo ...    29   6.2  
gi|31563352 mitochondrial ribosomal protein L55 isoform a [Homo ...    29   6.2  
gi|31563366 mitochondrial ribosomal protein L55 isoform a [Homo ...    29   6.2  
gi|31563364 mitochondrial ribosomal protein L55 isoform a [Homo ...    29   6.2  
gi|169646394 mitochondrial ribosomal protein L55 isoform b [Homo...    29   6.2  
gi|31563358 mitochondrial ribosomal protein L55 isoform a [Homo ...    29   6.2  
gi|31563356 mitochondrial ribosomal protein L55 isoform a [Homo ...    29   6.2  
gi|31563354 mitochondrial ribosomal protein L55 isoform a [Homo ...    29   6.2  
gi|31563362 mitochondrial ribosomal protein L55 isoform a [Homo ...    29   6.2  

>gi|44662828 S-phase 2 protein isoform 4 [Homo sapiens]
          Length = 316

 Score =  646 bits (1666), Expect = 0.0
 Identities = 316/316 (100%), Positives = 316/316 (100%)

Query: 1   MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60
           MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG
Sbjct: 1   MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60

Query: 61  CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120
           CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT
Sbjct: 61  CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120

Query: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180
           IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL
Sbjct: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180

Query: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240
           SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD
Sbjct: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240

Query: 241 PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD 300
           PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD
Sbjct: 241 PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD 300

Query: 301 AYDDLDQEDPDDDLDI 316
           AYDDLDQEDPDDDLDI
Sbjct: 301 AYDDLDQEDPDDDLDI 316


>gi|44662830 S-phase 2 protein isoform 1 [Homo sapiens]
          Length = 316

 Score =  646 bits (1666), Expect = 0.0
 Identities = 316/316 (100%), Positives = 316/316 (100%)

Query: 1   MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60
           MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG
Sbjct: 1   MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60

Query: 61  CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120
           CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT
Sbjct: 61  CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120

Query: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180
           IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL
Sbjct: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180

Query: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240
           SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD
Sbjct: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240

Query: 241 PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD 300
           PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD
Sbjct: 241 PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD 300

Query: 301 AYDDLDQEDPDDDLDI 316
           AYDDLDQEDPDDDLDI
Sbjct: 301 AYDDLDQEDPDDDLDI 316


>gi|44662826 S-phase 2 protein isoform 3 [Homo sapiens]
          Length = 316

 Score =  646 bits (1666), Expect = 0.0
 Identities = 316/316 (100%), Positives = 316/316 (100%)

Query: 1   MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60
           MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG
Sbjct: 1   MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60

Query: 61  CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120
           CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT
Sbjct: 61  CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120

Query: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180
           IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL
Sbjct: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180

Query: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240
           SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD
Sbjct: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240

Query: 241 PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD 300
           PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD
Sbjct: 241 PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD 300

Query: 301 AYDDLDQEDPDDDLDI 316
           AYDDLDQEDPDDDLDI
Sbjct: 301 AYDDLDQEDPDDDLDI 316


>gi|44662832 S-phase 2 protein isoform 2 [Homo sapiens]
          Length = 279

 Score =  503 bits (1295), Expect = e-143
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60
           MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG
Sbjct: 1   MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60

Query: 61  CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120
           CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT
Sbjct: 61  CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120

Query: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180
           IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL
Sbjct: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180

Query: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240
           SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD
Sbjct: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240

Query: 241 PHIPPV 246
           PHIPPV
Sbjct: 241 PHIPPV 246


>gi|193083145 SH3 domain containing 19 isoform c [Homo sapiens]
          Length = 731

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 40/150 (26%), Positives = 56/150 (37%), Gaps = 19/150 (12%)

Query: 157 SVGKVSVLGLLHEELHGPGPVGALSSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQW 216
           SVG   VLGL HE+   P P+ A   +  T  T+ G +         R        QT  
Sbjct: 224 SVGSEMVLGL-HEDPQSPPPLPAEKPIGNTFSTVSGKLSNVER---TRNLESNHPGQTGG 279

Query: 217 FSILPDFSLDLQEGPSVESQPYSDPHIPPVDPTTHLTFNLHLSKK-EREARDSLILPFQF 275
           F  +P         P +  +P +   IP   P T +        K     R +  LPF  
Sbjct: 280 FVRVP---------PRLPPRPVNGKTIPTQQPPTKVPPERPPPPKLSATRRSNKKLPFNR 330

Query: 276 SS-----EKQQALLRPRPGQATSHIFYEPD 300
           SS     +K+Q+ L     +A S +F   D
Sbjct: 331 SSSDMDLQKKQSNLATGLSKAKSQVFKNQD 360


>gi|24308527 stereocilin [Homo sapiens]
          Length = 1775

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 46/176 (26%), Positives = 60/176 (34%), Gaps = 30/176 (17%)

Query: 27  LVLLRDSVEWEGRSLLKALVKKSALCGEQVHILGCEVSEEEFREGFDSDINNRLVYHDFF 86
           LV LR S +WE             L G+ + +LG E +  +F           LV+    
Sbjct: 97  LVTLRGSPDWE---------PMLGLLGDMLALLGQEQTPRDF-----------LVHQAGV 136

Query: 87  RDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVTIALDSLSWLLLRLPCT---TLCQVLH 143
              L         PGGP    R  C R  P    +A D L  LLL L  T    L QV  
Sbjct: 137 LGGLVEVLLGALVPGGPPTPTRPPCTRDGPSDCVLAADWLPSLLLLLEGTRWQALVQVQP 196

Query: 144 AVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGALSSLAQTEVTLGGTMGQASA 199
           +V   ++   D        + GLL       G +     L   E   GG +    A
Sbjct: 197 SVDPTNATGLDGREAAPHFLQGLL-------GLLTPTGELGSKEALWGGLLRTVGA 245


>gi|148612838 hypothetical protein LOC158358 [Homo sapiens]
          Length = 2103

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 117  VPVTIALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPG- 175
            +PVT+AL +        P TT  ++++ V H  + PG + SV           + H PG 
Sbjct: 1742 IPVTVALPT--------PATTSPKIINTVPHSAAVPGATRSVSISKRQSRTSLQFHSPGI 1793

Query: 176  ----PVGALSSLAQTEVT 189
                P    ++  QTE++
Sbjct: 1794 STTVPTNVNTNKPQTELS 1811


>gi|212549782 caspase 8 associated protein 2 [Homo sapiens]
          Length = 1982

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 33   SVEWEGRSLLKALVKKSALCGEQVHILGCEVSEEEFREGFDSDINNRLVYHD 84
            SV+   R LLK  + KS        ++GC+ SEE +++  +S IN   V HD
Sbjct: 1183 SVDNSNRELLKEKLSKSEDPVHYKSLVGCKKSEENYQDQNNSSINT--VKHD 1232


>gi|6912288 caspase 8 associated protein 2 [Homo sapiens]
          Length = 1982

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 33   SVEWEGRSLLKALVKKSALCGEQVHILGCEVSEEEFREGFDSDINNRLVYHD 84
            SV+   R LLK  + KS        ++GC+ SEE +++  +S IN   V HD
Sbjct: 1183 SVDNSNRELLKEKLSKSEDPVHYKSLVGCKKSEENYQDQNNSSINT--VKHD 1232


>gi|212549532 caspase 8 associated protein 2 [Homo sapiens]
          Length = 1982

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 33   SVEWEGRSLLKALVKKSALCGEQVHILGCEVSEEEFREGFDSDINNRLVYHD 84
            SV+   R LLK  + KS        ++GC+ SEE +++  +S IN   V HD
Sbjct: 1183 SVDNSNRELLKEKLSKSEDPVHYKSLVGCKKSEENYQDQNNSSINT--VKHD 1232


>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
          Length = 1938

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 222  DFSLDLQEGPSVESQPYSDPHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQ 281
            DF+  L+  P     P  DPH        H+  N H++  ER  R SL  PF  +SE   
Sbjct: 1011 DFAEKLKMSPGRSRGPGGDPH--------HM--NPHMTFSERANRSSLHTPFSPNSE--- 1057

Query: 282  ALLRPRPGQATSHIFYEPDA 301
             L         +H + +P+A
Sbjct: 1058 TLASAYHANTRAHAYGDPNA 1077


>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
          Length = 1960

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 222  DFSLDLQEGPSVESQPYSDPHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQ 281
            DF+  L+  P     P  DPH        H+  N H++  ER  R SL  PF  +SE   
Sbjct: 1011 DFAEKLKMSPGRSRGPGGDPH--------HM--NPHMTFSERANRSSLHTPFSPNSE--- 1057

Query: 282  ALLRPRPGQATSHIFYEPDA 301
             L         +H + +P+A
Sbjct: 1058 TLASAYHANTRAHAYGDPNA 1077


>gi|145309324 FH2 domain containing 1 [Homo sapiens]
          Length = 1143

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 231 PSVESQPYSDPHIPPVDPTTHLTFNLHLSKKER 263
           P +  +P   P  P + PTTH+    HL KK+R
Sbjct: 64  PPLPGEPPIPPPPPGLPPTTHMNGYSHLGKKKR 96


>gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo
           sapiens]
          Length = 186

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 134 PCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELH---GPGPV 177
           PC   C + H+V+  +SC G +S  G + V  +LH +LH    P PV
Sbjct: 52  PC---CPIFHSVALIESCLGTASLAGPLGV-EILHIQLHSYLSPVPV 94


>gi|31563352 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
           RE R  L +P      S E+++A LR R  Q  S   YE +  DDL  E
Sbjct: 69  REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117


>gi|31563366 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
           RE R  L +P      S E+++A LR R  Q  S   YE +  DDL  E
Sbjct: 69  REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117


>gi|31563364 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
           RE R  L +P      S E+++A LR R  Q  S   YE +  DDL  E
Sbjct: 69  REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117


>gi|169646394 mitochondrial ribosomal protein L55 isoform b [Homo
           sapiens]
          Length = 164

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
           RE R  L +P      S E+++A LR R  Q  S   YE +  DDL  E
Sbjct: 105 REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 153


>gi|31563358 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
           RE R  L +P      S E+++A LR R  Q  S   YE +  DDL  E
Sbjct: 69  REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117


>gi|31563356 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
           RE R  L +P      S E+++A LR R  Q  S   YE +  DDL  E
Sbjct: 69  REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117


>gi|31563354 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
           RE R  L +P      S E+++A LR R  Q  S   YE +  DDL  E
Sbjct: 69  REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117


>gi|31563362 mitochondrial ribosomal protein L55 isoform a [Homo
           sapiens]
          Length = 128

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
           RE R  L +P      S E+++A LR R  Q  S   YE +  DDL  E
Sbjct: 69  REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,504,590
Number of Sequences: 37866
Number of extensions: 707584
Number of successful extensions: 1649
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1641
Number of HSP's gapped (non-prelim): 22
length of query: 316
length of database: 18,247,518
effective HSP length: 102
effective length of query: 214
effective length of database: 14,385,186
effective search space: 3078429804
effective search space used: 3078429804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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