Guide to the Human Genome
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Name: MRPL55 Sequence: fasta or formatted (128aa) NCBI GI: 31563366
Description:

mitochondrial ribosomal protein L55 isoform a

Referenced in:

Ribosomes

Other entries for this name:
alt prot [164aa] mitochondrial ribosomal protein L55 isoform b
alt mRNA [128aa] mitochondrial ribosomal protein L55 isoform a
alt mRNA [128aa] mitochondrial ribosomal protein L55 isoform a
alt mRNA [128aa] mitochondrial ribosomal protein L55 isoform a
alt mRNA [128aa] mitochondrial ribosomal protein L55 isoform a
alt mRNA [128aa] mitochondrial ribosomal protein L55 isoform a
alt mRNA [128aa] mitochondrial ribosomal protein L55 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         11           2
 C cysteine            0.0          0           0
 D aspartate           4.7          6           2
 E glutamate           6.2          8           2
 F phenylalanine       0.8          1           1
 G glycine             3.1          4           1
 H histidine           3.1          4           1
 I isoleucine          2.3          3           1
 K lysine              4.7          6           2
 L leucine            12.5         16           2
 M methionine          2.3          3           1
 N asparagine          0.0          0           0
 P proline             3.9          5           1
 Q glutamine           5.5          7           1
 R arginine           17.2         22           2
 S serine              8.6         11           2
 T threonine           6.2          8           1
 V valine              4.7          6           1
 W tryptophan          1.6          2           1
 Y tyrosine            3.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial ribosomal protein L55 isoform a 
MRPL55                1.000   mitochondrial ribosomal protein L55 isoform a 
MRPL55                1.000   mitochondrial ribosomal protein L55 isoform a 
MRPL55                1.000   mitochondrial ribosomal protein L55 isoform a 
MRPL55                1.000   mitochondrial ribosomal protein L55 isoform a 
MRPL55                1.000   mitochondrial ribosomal protein L55 isoform a 
MRPL55                1.000   mitochondrial ribosomal protein L55 isoform a 
MRPL55                0.934   mitochondrial ribosomal protein L55 isoform b [Homo...
RASAL2                0.044   RAS protein activator like 2 isoform 2 
RASAL2                0.044   RAS protein activator like 2 isoform 1 
C19orf29              0.039   chromosome 19 open reading frame 29 
C19orf29              0.039   chromosome 19 open reading frame 29 
KIAA0182              0.031   genetic suppressor element 1 isoform 2 
KIAA0182              0.031   genetic suppressor element 1 isoform 1 
C17orf81              0.017   S-phase 2 protein isoform 4 
C17orf81              0.017   S-phase 2 protein isoform 1 
C17orf81              0.017   S-phase 2 protein isoform 3 
MLLT4                 0.013   myeloid/lymphoid or mixed-lineage leukemia (trithora...
HDGF2                 0.013   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.013   hepatoma-derived growth factor-related protein 2 iso...
HMMR                  0.013   hyaluronan-mediated motility receptor isoform d [Ho...
HMMR                  0.013   hyaluronan-mediated motility receptor isoform a [Ho...
HMMR                  0.013   hyaluronan-mediated motility receptor isoform c [Ho...
HMMR                  0.013   hyaluronan-mediated motility receptor isoform b [Ho...
AKAP13                0.013   A-kinase anchor protein 13 isoform 1 
AKAP13                0.013   A-kinase anchor protein 13 isoform 3 
AKAP13                0.013   A-kinase anchor protein 13 isoform 2 
SETD1B                0.013   SET domain containing 1B 
ATAD3A                0.013   ATPase family, AAA domain containing 3A 
SMARCB1               0.013   SWI/SNF related, matrix associated, actin dependent ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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