Guide to the Human Genome
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Name: C17orf81 Sequence: fasta or formatted (316aa) NCBI GI: 44662826
Description:

S-phase 2 protein isoform 3

Referenced in:

Additional Genes in Development

Other entries for this name:
alt mRNA [316aa] S-phase 2 protein isoform 4
alt mRNA [316aa] S-phase 2 protein isoform 1
alt prot [279aa] S-phase 2 protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         18           1
 C cysteine            2.2          7           1
 D aspartate           7.9         25           3
 E glutamate           7.3         23           3
 F phenylalanine       3.5         11           2
 G glycine             7.3         23           2
 H histidine           3.5         11           1
 I isoleucine          2.8          9           1
 K lysine              2.8          9           2
 L leucine            14.2         45           3
 M methionine          1.3          4           1
 N asparagine          1.3          4           2
 P proline             7.6         24           2
 Q glutamine           4.7         15           2
 R arginine            5.7         18           2
 S serine              9.2         29           3
 T threonine           5.1         16           2
 V valine              5.4         17           1
 W tryptophan          1.3          4           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S-phase 2 protein isoform 3 
C17orf81              1.000   S-phase 2 protein isoform 4 
C17orf81              1.000   S-phase 2 protein isoform 1 
C17orf81              0.770   S-phase 2 protein isoform 2 
SH3D19                0.011   SH3 domain containing 19 isoform c 
STRC                  0.010   stereocilin 
KIAA2026              0.010   hypothetical protein LOC158358 
CASP8AP2              0.008   caspase 8 associated protein 2 
CASP8AP2              0.008   caspase 8 associated protein 2 
CASP8AP2              0.008   caspase 8 associated protein 2 
TCF20                 0.008   transcription factor 20 isoform 2 
TCF20                 0.008   transcription factor 20 isoform 1 
FHDC1                 0.006   FH2 domain containing 1 
LOC100291947          0.006   PREDICTED: hypothetical protein XP_002345753 
MRPL55                0.006   mitochondrial ribosomal protein L55 isoform a 
MRPL55                0.006   mitochondrial ribosomal protein L55 isoform a 
MRPL55                0.006   mitochondrial ribosomal protein L55 isoform a 
MRPL55                0.006   mitochondrial ribosomal protein L55 isoform b [Homo...
MRPL55                0.006   mitochondrial ribosomal protein L55 isoform a 
MRPL55                0.006   mitochondrial ribosomal protein L55 isoform a 
MRPL55                0.006   mitochondrial ribosomal protein L55 isoform a 
MRPL55                0.006   mitochondrial ribosomal protein L55 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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