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Search of human proteins with 44662826
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|44662826 S-phase 2 protein isoform 3 [Homo sapiens]
(316 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|44662828 S-phase 2 protein isoform 4 [Homo sapiens] 646 0.0
gi|44662830 S-phase 2 protein isoform 1 [Homo sapiens] 646 0.0
gi|44662826 S-phase 2 protein isoform 3 [Homo sapiens] 646 0.0
gi|44662832 S-phase 2 protein isoform 2 [Homo sapiens] 503 e-143
gi|193083145 SH3 domain containing 19 isoform c [Homo sapiens] 32 0.74
gi|24308527 stereocilin [Homo sapiens] 31 1.6
gi|148612838 hypothetical protein LOC158358 [Homo sapiens] 31 1.6
gi|212549782 caspase 8 associated protein 2 [Homo sapiens] 30 2.8
gi|6912288 caspase 8 associated protein 2 [Homo sapiens] 30 2.8
gi|212549532 caspase 8 associated protein 2 [Homo sapiens] 30 2.8
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 30 2.8
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 30 2.8
gi|145309324 FH2 domain containing 1 [Homo sapiens] 29 4.8
gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo ... 29 6.2
gi|31563352 mitochondrial ribosomal protein L55 isoform a [Homo ... 29 6.2
gi|31563366 mitochondrial ribosomal protein L55 isoform a [Homo ... 29 6.2
gi|31563364 mitochondrial ribosomal protein L55 isoform a [Homo ... 29 6.2
gi|169646394 mitochondrial ribosomal protein L55 isoform b [Homo... 29 6.2
gi|31563358 mitochondrial ribosomal protein L55 isoform a [Homo ... 29 6.2
gi|31563356 mitochondrial ribosomal protein L55 isoform a [Homo ... 29 6.2
gi|31563354 mitochondrial ribosomal protein L55 isoform a [Homo ... 29 6.2
gi|31563362 mitochondrial ribosomal protein L55 isoform a [Homo ... 29 6.2
>gi|44662828 S-phase 2 protein isoform 4 [Homo sapiens]
Length = 316
Score = 646 bits (1666), Expect = 0.0
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60
MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG
Sbjct: 1 MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60
Query: 61 CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120
CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT
Sbjct: 61 CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120
Query: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180
IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL
Sbjct: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180
Query: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240
SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD
Sbjct: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240
Query: 241 PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD 300
PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD
Sbjct: 241 PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD 300
Query: 301 AYDDLDQEDPDDDLDI 316
AYDDLDQEDPDDDLDI
Sbjct: 301 AYDDLDQEDPDDDLDI 316
>gi|44662830 S-phase 2 protein isoform 1 [Homo sapiens]
Length = 316
Score = 646 bits (1666), Expect = 0.0
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60
MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG
Sbjct: 1 MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60
Query: 61 CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120
CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT
Sbjct: 61 CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120
Query: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180
IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL
Sbjct: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180
Query: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240
SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD
Sbjct: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240
Query: 241 PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD 300
PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD
Sbjct: 241 PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD 300
Query: 301 AYDDLDQEDPDDDLDI 316
AYDDLDQEDPDDDLDI
Sbjct: 301 AYDDLDQEDPDDDLDI 316
>gi|44662826 S-phase 2 protein isoform 3 [Homo sapiens]
Length = 316
Score = 646 bits (1666), Expect = 0.0
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60
MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG
Sbjct: 1 MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60
Query: 61 CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120
CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT
Sbjct: 61 CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120
Query: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180
IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL
Sbjct: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180
Query: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240
SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD
Sbjct: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240
Query: 241 PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD 300
PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD
Sbjct: 241 PHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYEPD 300
Query: 301 AYDDLDQEDPDDDLDI 316
AYDDLDQEDPDDDLDI
Sbjct: 301 AYDDLDQEDPDDDLDI 316
>gi|44662832 S-phase 2 protein isoform 2 [Homo sapiens]
Length = 279
Score = 503 bits (1295), Expect = e-143
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60
MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG
Sbjct: 1 MTPSEGARAGTGRELEMLDSLLALGGLVLLRDSVEWEGRSLLKALVKKSALCGEQVHILG 60
Query: 61 CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120
CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT
Sbjct: 61 CEVSEEEFREGFDSDINNRLVYHDFFRDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVT 120
Query: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180
IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL
Sbjct: 121 IALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGAL 180
Query: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240
SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD
Sbjct: 181 SSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQWFSILPDFSLDLQEGPSVESQPYSD 240
Query: 241 PHIPPV 246
PHIPPV
Sbjct: 241 PHIPPV 246
>gi|193083145 SH3 domain containing 19 isoform c [Homo sapiens]
Length = 731
Score = 32.0 bits (71), Expect = 0.74
Identities = 40/150 (26%), Positives = 56/150 (37%), Gaps = 19/150 (12%)
Query: 157 SVGKVSVLGLLHEELHGPGPVGALSSLAQTEVTLGGTMGQASAHILCRRPRQRPTDQTQW 216
SVG VLGL HE+ P P+ A + T T+ G + R QT
Sbjct: 224 SVGSEMVLGL-HEDPQSPPPLPAEKPIGNTFSTVSGKLSNVER---TRNLESNHPGQTGG 279
Query: 217 FSILPDFSLDLQEGPSVESQPYSDPHIPPVDPTTHLTFNLHLSKK-EREARDSLILPFQF 275
F +P P + +P + IP P T + K R + LPF
Sbjct: 280 FVRVP---------PRLPPRPVNGKTIPTQQPPTKVPPERPPPPKLSATRRSNKKLPFNR 330
Query: 276 SS-----EKQQALLRPRPGQATSHIFYEPD 300
SS +K+Q+ L +A S +F D
Sbjct: 331 SSSDMDLQKKQSNLATGLSKAKSQVFKNQD 360
>gi|24308527 stereocilin [Homo sapiens]
Length = 1775
Score = 30.8 bits (68), Expect = 1.6
Identities = 46/176 (26%), Positives = 60/176 (34%), Gaps = 30/176 (17%)
Query: 27 LVLLRDSVEWEGRSLLKALVKKSALCGEQVHILGCEVSEEEFREGFDSDINNRLVYHDFF 86
LV LR S +WE L G+ + +LG E + +F LV+
Sbjct: 97 LVTLRGSPDWE---------PMLGLLGDMLALLGQEQTPRDF-----------LVHQAGV 136
Query: 87 RDPLNWSKTEEAFPGGPLGALRAMCKRTDPVPVTIALDSLSWLLLRLPCT---TLCQVLH 143
L PGGP R C R P +A D L LLL L T L QV
Sbjct: 137 LGGLVEVLLGALVPGGPPTPTRPPCTRDGPSDCVLAADWLPSLLLLLEGTRWQALVQVQP 196
Query: 144 AVSHQDSCPGDSSSVGKVSVLGLLHEELHGPGPVGALSSLAQTEVTLGGTMGQASA 199
+V ++ D + GLL G + L E GG + A
Sbjct: 197 SVDPTNATGLDGREAAPHFLQGLL-------GLLTPTGELGSKEALWGGLLRTVGA 245
>gi|148612838 hypothetical protein LOC158358 [Homo sapiens]
Length = 2103
Score = 30.8 bits (68), Expect = 1.6
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 117 VPVTIALDSLSWLLLRLPCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELHGPG- 175
+PVT+AL + P TT ++++ V H + PG + SV + H PG
Sbjct: 1742 IPVTVALPT--------PATTSPKIINTVPHSAAVPGATRSVSISKRQSRTSLQFHSPGI 1793
Query: 176 ----PVGALSSLAQTEVT 189
P ++ QTE++
Sbjct: 1794 STTVPTNVNTNKPQTELS 1811
>gi|212549782 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 30.0 bits (66), Expect = 2.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 33 SVEWEGRSLLKALVKKSALCGEQVHILGCEVSEEEFREGFDSDINNRLVYHD 84
SV+ R LLK + KS ++GC+ SEE +++ +S IN V HD
Sbjct: 1183 SVDNSNRELLKEKLSKSEDPVHYKSLVGCKKSEENYQDQNNSSINT--VKHD 1232
>gi|6912288 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 30.0 bits (66), Expect = 2.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 33 SVEWEGRSLLKALVKKSALCGEQVHILGCEVSEEEFREGFDSDINNRLVYHD 84
SV+ R LLK + KS ++GC+ SEE +++ +S IN V HD
Sbjct: 1183 SVDNSNRELLKEKLSKSEDPVHYKSLVGCKKSEENYQDQNNSSINT--VKHD 1232
>gi|212549532 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 30.0 bits (66), Expect = 2.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 33 SVEWEGRSLLKALVKKSALCGEQVHILGCEVSEEEFREGFDSDINNRLVYHD 84
SV+ R LLK + KS ++GC+ SEE +++ +S IN V HD
Sbjct: 1183 SVDNSNRELLKEKLSKSEDPVHYKSLVGCKKSEENYQDQNNSSINT--VKHD 1232
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 30.0 bits (66), Expect = 2.8
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 222 DFSLDLQEGPSVESQPYSDPHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQ 281
DF+ L+ P P DPH H+ N H++ ER R SL PF +SE
Sbjct: 1011 DFAEKLKMSPGRSRGPGGDPH--------HM--NPHMTFSERANRSSLHTPFSPNSE--- 1057
Query: 282 ALLRPRPGQATSHIFYEPDA 301
L +H + +P+A
Sbjct: 1058 TLASAYHANTRAHAYGDPNA 1077
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 30.0 bits (66), Expect = 2.8
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 222 DFSLDLQEGPSVESQPYSDPHIPPVDPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQ 281
DF+ L+ P P DPH H+ N H++ ER R SL PF +SE
Sbjct: 1011 DFAEKLKMSPGRSRGPGGDPH--------HM--NPHMTFSERANRSSLHTPFSPNSE--- 1057
Query: 282 ALLRPRPGQATSHIFYEPDA 301
L +H + +P+A
Sbjct: 1058 TLASAYHANTRAHAYGDPNA 1077
>gi|145309324 FH2 domain containing 1 [Homo sapiens]
Length = 1143
Score = 29.3 bits (64), Expect = 4.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 231 PSVESQPYSDPHIPPVDPTTHLTFNLHLSKKER 263
P + +P P P + PTTH+ HL KK+R
Sbjct: 64 PPLPGEPPIPPPPPGLPPTTHMNGYSHLGKKKR 96
>gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo
sapiens]
Length = 186
Score = 28.9 bits (63), Expect = 6.2
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 134 PCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELH---GPGPV 177
PC C + H+V+ +SC G +S G + V +LH +LH P PV
Sbjct: 52 PC---CPIFHSVALIESCLGTASLAGPLGV-EILHIQLHSYLSPVPV 94
>gi|31563352 mitochondrial ribosomal protein L55 isoform a [Homo
sapiens]
Length = 128
Score = 28.9 bits (63), Expect = 6.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
RE R L +P S E+++A LR R Q S YE + DDL E
Sbjct: 69 REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117
>gi|31563366 mitochondrial ribosomal protein L55 isoform a [Homo
sapiens]
Length = 128
Score = 28.9 bits (63), Expect = 6.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
RE R L +P S E+++A LR R Q S YE + DDL E
Sbjct: 69 REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117
>gi|31563364 mitochondrial ribosomal protein L55 isoform a [Homo
sapiens]
Length = 128
Score = 28.9 bits (63), Expect = 6.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
RE R L +P S E+++A LR R Q S YE + DDL E
Sbjct: 69 REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117
>gi|169646394 mitochondrial ribosomal protein L55 isoform b [Homo
sapiens]
Length = 164
Score = 28.9 bits (63), Expect = 6.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
RE R L +P S E+++A LR R Q S YE + DDL E
Sbjct: 105 REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 153
>gi|31563358 mitochondrial ribosomal protein L55 isoform a [Homo
sapiens]
Length = 128
Score = 28.9 bits (63), Expect = 6.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
RE R L +P S E+++A LR R Q S YE + DDL E
Sbjct: 69 REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117
>gi|31563356 mitochondrial ribosomal protein L55 isoform a [Homo
sapiens]
Length = 128
Score = 28.9 bits (63), Expect = 6.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
RE R L +P S E+++A LR R Q S YE + DDL E
Sbjct: 69 REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117
>gi|31563354 mitochondrial ribosomal protein L55 isoform a [Homo
sapiens]
Length = 128
Score = 28.9 bits (63), Expect = 6.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
RE R L +P S E+++A LR R Q S YE + DDL E
Sbjct: 69 REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117
>gi|31563362 mitochondrial ribosomal protein L55 isoform a [Homo
sapiens]
Length = 128
Score = 28.9 bits (63), Expect = 6.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 263 REARDSLILPFQF---SSEKQQALLRPRPGQATSHIFYEPDAYDDLDQE 308
RE R L +P S E+++A LR R Q S YE + DDL E
Sbjct: 69 REPRRMLAMPIDLDTLSPEERRARLRKREAQLQSRKEYEQELSDDLHVE 117
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,504,590
Number of Sequences: 37866
Number of extensions: 707584
Number of successful extensions: 1649
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1641
Number of HSP's gapped (non-prelim): 22
length of query: 316
length of database: 18,247,518
effective HSP length: 102
effective length of query: 214
effective length of database: 14,385,186
effective search space: 3078429804
effective search space used: 3078429804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.