Search of human proteins with 44662813

Search of human proteins with 44662813

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|44662813 transmembrane protein 88 [Homo sapiens]
         (159 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|44662813 transmembrane protein 88 [Homo sapiens]                   321   1e-88
gi|226442744 hypothetical protein LOC643965 [Homo sapiens]             63   1e-10
gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo sap...    63   1e-10
gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo sap...    33   0.13 
gi|170932492 transmembrane protease, serine 5 [Homo sapiens]           30   1.1  
gi|18426873 asialoglycoprotein receptor 2 isoform a [Homo sapiens]     28   2.5  
gi|4502253 asialoglycoprotein receptor 2 isoform a [Homo sapiens]      28   2.5  
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [...    28   3.3  
gi|46485465 Numb-interacting protein [Homo sapiens]                    28   4.3  
gi|18426877 asialoglycoprotein receptor 2 isoform c [Homo sapiens]     28   4.3  
gi|18426875 asialoglycoprotein receptor 2 isoform b [Homo sapiens]     28   4.3  
gi|169171444 PREDICTED: hypothetical protein LOC154860 [Homo sap...    27   5.6  
gi|6912348 lysophosphatidic acid receptor 3 [Homo sapiens]             27   5.6  
gi|40255101 solute carrier family 39 (zinc transporter), member ...    27   5.6  
gi|190014617 solute carrier family 39 (zinc transporter), member...    27   5.6  
gi|216548560 hypothetical protein LOC51093 isoform 1 [Homo sapiens]    27   7.4  
gi|134244285 Notch homolog 3 [Homo sapiens]                            27   9.6  

>gi|44662813 transmembrane protein 88 [Homo sapiens]
          Length = 159

 Score =  321 bits (823), Expect = 1e-88
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MADVPGAQRAVPGDGPEPRDPLDCWACAVLVTAQNLLVAAFNLLLLVLVLGTILLPAVTM 60
           MADVPGAQRAVPGDGPEPRDPLDCWACAVLVTAQNLLVAAFNLLLLVLVLGTILLPAVTM
Sbjct: 1   MADVPGAQRAVPGDGPEPRDPLDCWACAVLVTAQNLLVAAFNLLLLVLVLGTILLPAVTM 60

Query: 61  LGFGFLCHSQFLRSQAPPCTAHLRDPGFTALLVTGFLLLVPLLVLALASYRRLCLRLRLA 120
           LGFGFLCHSQFLRSQAPPCTAHLRDPGFTALLVTGFLLLVPLLVLALASYRRLCLRLRLA
Sbjct: 61  LGFGFLCHSQFLRSQAPPCTAHLRDPGFTALLVTGFLLLVPLLVLALASYRRLCLRLRLA 120

Query: 121 DCLVPYSRALYRRRRAPQPRQIRASPGSQAVPTSGKVWV 159
           DCLVPYSRALYRRRRAPQPRQIRASPGSQAVPTSGKVWV
Sbjct: 121 DCLVPYSRALYRRRRAPQPRQIRASPGSQAVPTSGKVWV 159


>gi|226442744 hypothetical protein LOC643965 [Homo sapiens]
          Length = 163

 Score = 62.8 bits (151), Expect = 1e-10
 Identities = 39/94 (41%), Positives = 49/94 (52%)

Query: 25  WACAVLVTAQNLLVAAFNLLLLVLVLGTILLPAVTMLGFGFLCHSQFLRSQAPPCTAHLR 84
           W+   L+  + L     +LLL       +LLPA  ++  GFLCHS+   +  P C A   
Sbjct: 41  WSGPPLLPGRLLAGLLLHLLLPAAAFLLVLLPAAAVVYLGFLCHSRVHPAPGPRCRALFS 100

Query: 85  DPGFTALLVTGFLLLVPLLVLALASYRRLCLRLR 118
           D G  AL+V G L L PLLVLA A   RL  RLR
Sbjct: 101 DRGSAALIVFGLLSLPPLLVLASAVRARLARRLR 134


>gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo
           sapiens]
          Length = 487

 Score = 62.8 bits (151), Expect = 1e-10
 Identities = 39/94 (41%), Positives = 49/94 (52%)

Query: 25  WACAVLVTAQNLLVAAFNLLLLVLVLGTILLPAVTMLGFGFLCHSQFLRSQAPPCTAHLR 84
           W+   L+  + L     +LLL       +LLPA  ++  GFLCHS+   +  P C A   
Sbjct: 365 WSGPPLLPGRLLAGLLLHLLLPAAAFLLVLLPAAAVVYLGFLCHSRVHPAPGPRCRALFS 424

Query: 85  DPGFTALLVTGFLLLVPLLVLALASYRRLCLRLR 118
           D G  AL+V G L L PLLVLA A   RL  RLR
Sbjct: 425 DRGSAALIVFGLLSLPPLLVLASAVRARLARRLR 458


>gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo
           sapiens]
          Length = 451

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 25  WACAVLVTAQNLLVAAFNLLLLVLVLGTILLPAVTMLGFGFLCHSQFL-----RSQAPPC 79
           W+   L+  + L     +LLL       +LLPA  ++  GFLCHS+ L     ++  PP 
Sbjct: 365 WSGPPLLPGRLLAGLLLHLLLPAAAFLLVLLPAAAVVYLGFLCHSRGLQPASGQTPGPPA 424

Query: 80  TA 81
            A
Sbjct: 425 AA 426


>gi|170932492 transmembrane protease, serine 5 [Homo sapiens]
          Length = 457

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 21/51 (41%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 5  PGAQRAVPGDGPEPRDPLDCW-----ACAVLVTAQNLLVAAFNLLLLVLVL 50
          PG  RA PGD   P     CW      CAVL     L  A     LLVL L
Sbjct: 22 PGIFRAEPGDQQHPISQAVCWRSMRRGCAVLGALGLLAGAGVGSWLLVLYL 72


>gi|18426873 asialoglycoprotein receptor 2 isoform a [Homo
          sapiens]
          Length = 311

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 8/54 (14%)

Query: 5  PGAQRAVPG------DGPEPRDPLDCWACAVLVTAQNLLVAAFNLLLLVLVLGT 52
          PG +R  P        GP P  PL    C+++  +  LL  +FN+LLLV++  T
Sbjct: 26 PGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS--LLALSFNILLLVVICVT 77


>gi|4502253 asialoglycoprotein receptor 2 isoform a [Homo sapiens]
          Length = 311

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 8/54 (14%)

Query: 5  PGAQRAVPG------DGPEPRDPLDCWACAVLVTAQNLLVAAFNLLLLVLVLGT 52
          PG +R  P        GP P  PL    C+++  +  LL  +FN+LLLV++  T
Sbjct: 26 PGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS--LLALSFNILLLVVICVT 77


>gi|148528975 LON peptidase N-terminal domain and ring finger 2
           [Homo sapiens]
          Length = 754

 Score = 28.1 bits (61), Expect = 3.3
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 2   ADVPGAQRAVPGDG---PEPRDPLDCWAC 27
           A+ PG +   PG+G   PEPR P D   C
Sbjct: 115 AENPGGEPEAPGEGGPAPEPRAPRDLLGC 143


>gi|46485465 Numb-interacting protein [Homo sapiens]
          Length = 483

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 37  LVAAFNLLLLVLVLGTILLPAVTMLGFGFLCHSQFLRSQAPPCTAHL--------RDPGF 88
           L+A   L + VLV G  +L A  +     L       S   PC  HL          P F
Sbjct: 192 LLANVMLSMPVLVYGGYMLLATGIFQLLALLFFSMATSLTSPCPLHLGASVLHTHHGPAF 251

Query: 89  TALLVTGFLLLVPLLVLALASYRRL 113
              L TG  LL  LL LA+A   R+
Sbjct: 252 WITLTTG--LLCVLLGLAMAVAHRM 274


>gi|18426877 asialoglycoprotein receptor 2 isoform c [Homo
          sapiens]
          Length = 292

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 15 GPEPRDPLDCWACAVLVTAQNLLVAAFNLLLLVLVLGT 52
          GP P  PL    C+++  +  LL  +FN+LLLV++  T
Sbjct: 23 GPPPAQPLAQRLCSMVCFS--LLALSFNILLLVVICVT 58


>gi|18426875 asialoglycoprotein receptor 2 isoform b [Homo
          sapiens]
          Length = 287

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 15 GPEPRDPLDCWACAVLVTAQNLLVAAFNLLLLVLVLGT 52
          GP P  PL    C+++  +  LL  +FN+LLLV++  T
Sbjct: 23 GPPPAQPLAQRLCSMVCFS--LLALSFNILLLVVICVT 58


>gi|169171444 PREDICTED: hypothetical protein LOC154860 [Homo
           sapiens]
          Length = 125

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 7/44 (15%)

Query: 111 RRLCLRLRLADCLVPYSR-----ALYRRRRAPQPRQIRASPGSQ 149
           RRL LRLRL  C +P  R     A ++ RRAP P Q  AS  S+
Sbjct: 63  RRLRLRLRL--CGLPPPRQERPGARWKLRRAPSPAQSLASRRSR 104


>gi|6912348 lysophosphatidic acid receptor 3 [Homo sapiens]
          Length = 353

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 35  NLLVAAFNLLLLVLVLGTILLPAVTMLGFGFLCHSQFLRSQAPPCTAHLRDPGFTALLVT 94
           NL      LL+L++    I + AV  LG+  LC+     S AP  +        + L+  
Sbjct: 139 NLTKKRVTLLILLVWAIAIFMGAVPTLGWNCLCNISACSSLAPIYSR-------SYLVFW 191

Query: 95  GFLLLVPLLVLALASYRRLCLRLRLADCLVPYSRALYRRRRAP 137
               L+  L++ +   R      R  + L P++     RRR P
Sbjct: 192 TVSNLMAFLIMVVVYLRIYVYVKRKTNVLSPHTSGSISRRRTP 234


>gi|40255101 solute carrier family 39 (zinc transporter), member
          13 isoform b [Homo sapiens]
          Length = 364

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 22 LDCWACAVLVTAQNLLVAAFNLLLLVLVLGTIL 54
          LD W C++L +    L   F LL++ L +GT+L
Sbjct: 65 LDTWICSLLGSLMVGLSGVFPLLVIPLEMGTML 97


>gi|190014617 solute carrier family 39 (zinc transporter), member
          13 isoform a [Homo sapiens]
          Length = 371

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 22 LDCWACAVLVTAQNLLVAAFNLLLLVLVLGTIL 54
          LD W C++L +    L   F LL++ L +GT+L
Sbjct: 65 LDTWICSLLGSLMVGLSGVFPLLVIPLEMGTML 97


>gi|216548560 hypothetical protein LOC51093 isoform 1 [Homo sapiens]
          Length = 475

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 8   QRAVPGDGPEPRDPLDCWACAVLVTAQNLLVAAFNLLLLVLVLGTILL 55
           QR +   G +P+ PL+  A    V  +N +VA F+L LL+  L   L+
Sbjct: 377 QRGLQRVGLDPQLPLNLAALQAHVAQENRVVAFFSLALLLAPLVETLI 424


>gi|134244285 Notch homolog 3 [Homo sapiens]
          Length = 2321

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 3    DVPGAQRAVPGDGPEPRDPLDCWACAVLVTAQNLLVAAFNLLLLVLVLGTIL 54
            D P   R V G+  EP +P         V    LLVA   LLL++LVLG ++
Sbjct: 1621 DFPYPLRDVRGEPLEPPEPS--------VPLLPLLVAGAVLLLVILVLGVMV 1664


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.143    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,939,098
Number of Sequences: 37866
Number of extensions: 285167
Number of successful extensions: 1273
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1259
Number of HSP's gapped (non-prelim): 24
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.