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Search of human proteins with 126032305
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|126032305 sterile alpha motif domain containing 3 isoform a
[Homo sapiens]
(520 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|126032305 sterile alpha motif domain containing 3 isoform a [... 1052 0.0
gi|126032345 sterile alpha motif domain containing 3 isoform b [... 442 e-124
gi|29788751 diacylglycerol kinase, eta isoform 2 [Homo sapiens] 42 0.001
gi|93204861 protein phosphatase 1, regulatory (inhibitor) subuni... 42 0.001
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 39 0.015
gi|25777596 diacylglycerol kinase, delta 130kDa isoform 1 [Homo ... 37 0.044
gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo ... 37 0.044
gi|38016914 SAM domain- and HD domain-containing protein 1 [Homo... 37 0.057
gi|29294627 PTPRF interacting protein binding protein 1 isoform ... 37 0.057
gi|117414154 sodium channel associated protein 2 isoform b [Homo... 34 0.37
gi|117414162 sodium channel associated protein 2 isoform a [Homo... 34 0.37
gi|189571685 WD repeat, sterile alpha motif and U-box domain con... 34 0.37
gi|189571683 WD repeat, sterile alpha motif and U-box domain con... 34 0.37
gi|189571681 WD repeat, sterile alpha motif and U-box domain con... 34 0.37
gi|18129632 sterile alpha motif domain containing 10 [Homo sapiens] 34 0.37
gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1... 33 0.63
gi|223005859 WD repeat domain 67 isoform 1 [Homo sapiens] 33 0.82
gi|223005857 WD repeat domain 67 isoform 2 [Homo sapiens] 33 0.82
gi|28557802 sterile alpha motif domain containing 14 [Homo sapiens] 32 1.1
gi|93277096 limbin [Homo sapiens] 32 1.4
gi|219521928 DIS3 mitotic control homolog (S. cerevisiae)-like i... 32 1.8
gi|19115966 DIS3 mitotic control homolog (S. cerevisiae)-like is... 32 1.8
gi|38348729 hypothetical protein LOC203238 [Homo sapiens] 32 1.8
gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo sa... 31 2.4
gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo sap... 31 2.4
gi|100814339 coiled-coil domain containing 146 [Homo sapiens] 31 3.1
gi|34878777 ring finger protein 20 [Homo sapiens] 30 4.1
gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens] 30 4.1
gi|71274154 Scm-like with four mbt domains 2 [Homo sapiens] 30 4.1
gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens] 30 4.1
>gi|126032305 sterile alpha motif domain containing 3 isoform a
[Homo sapiens]
Length = 520
Score = 1052 bits (2721), Expect = 0.0
Identities = 520/520 (100%), Positives = 520/520 (100%)
Query: 1 METWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIGHQAVLMDLI 60
METWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIGHQAVLMDLI
Sbjct: 1 METWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIGHQAVLMDLI 60
Query: 61 KKYKQNTQGLKSPENPKKAALVMQTEAARDYRDEESSSPARHGEQMPSFYPAENLDNGLI 120
KKYKQNTQGLKSPENPKKAALVMQTEAARDYRDEESSSPARHGEQMPSFYPAENLDNGLI
Sbjct: 61 KKYKQNTQGLKSPENPKKAALVMQTEAARDYRDEESSSPARHGEQMPSFYPAENLDNGLI 120
Query: 121 DQRVLKQRRNVKQILARSKALQWTKSYVLPEFPYDVKCMLAEQKCPDHSMRIRIIEFLQA 180
DQRVLKQRRNVKQILARSKALQWTKSYVLPEFPYDVKCMLAEQKCPDHSMRIRIIEFLQA
Sbjct: 121 DQRVLKQRRNVKQILARSKALQWTKSYVLPEFPYDVKCMLAEQKCPDHSMRIRIIEFLQA 180
Query: 181 DMTKYLEGSLYPSTQQYNDVVNALLQAHPFLDEDGCGFFLWKRALKDRFKYVRRPIEDDE 240
DMTKYLEGSLYPSTQQYNDVVNALLQAHPFLDEDGCGFFLWKRALKDRFKYVRRPIEDDE
Sbjct: 181 DMTKYLEGSLYPSTQQYNDVVNALLQAHPFLDEDGCGFFLWKRALKDRFKYVRRPIEDDE 240
Query: 241 QVIRNKCKFGHRRGQTRKSLADIRFDEIKLVQIKEEAVCFDSELDEHIKWFQQEYVKTEK 300
QVIRNKCKFGHRRGQTRKSLADIRFDEIKLVQIKEEAVCFDSELDEHIKWFQQEYVKTEK
Sbjct: 241 QVIRNKCKFGHRRGQTRKSLADIRFDEIKLVQIKEEAVCFDSELDEHIKWFQQEYVKTEK 300
Query: 301 DWREIDKRMSQTLEIRRKMIGSRTPLKDILKLFPFLKCPYQMFREFQLLTRTDIYKKTRH 360
DWREIDKRMSQTLEIRRKMIGSRTPLKDILKLFPFLKCPYQMFREFQLLTRTDIYKKTRH
Sbjct: 301 DWREIDKRMSQTLEIRRKMIGSRTPLKDILKLFPFLKCPYQMFREFQLLTRTDIYKKTRH 360
Query: 361 ILESYSENILTSFSVVDNPINIVLQEKMKHYTDEDMLKYMKMTATCLLLPDVFGDDPSLF 420
ILESYSENILTSFSVVDNPINIVLQEKMKHYTDEDMLKYMKMTATCLLLPDVFGDDPSLF
Sbjct: 361 ILESYSENILTSFSVVDNPINIVLQEKMKHYTDEDMLKYMKMTATCLLLPDVFGDDPSLF 420
Query: 421 VIMNEQVQVSTPVLEVKNPFNMEVCEFSLYLERERLTKVDDCVTALAALVAAFHVFRIEC 480
VIMNEQVQVSTPVLEVKNPFNMEVCEFSLYLERERLTKVDDCVTALAALVAAFHVFRIEC
Sbjct: 421 VIMNEQVQVSTPVLEVKNPFNMEVCEFSLYLERERLTKVDDCVTALAALVAAFHVFRIEC 480
Query: 481 PRRLSQTFNFLETLIFDMHSPYFPSLKEKENEVGFQHPLT 520
PRRLSQTFNFLETLIFDMHSPYFPSLKEKENEVGFQHPLT
Sbjct: 481 PRRLSQTFNFLETLIFDMHSPYFPSLKEKENEVGFQHPLT 520
>gi|126032345 sterile alpha motif domain containing 3 isoform b
[Homo sapiens]
Length = 221
Score = 442 bits (1136), Expect = e-124
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 METWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIGHQAVLMDLI 60
METWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIGHQAVLMDLI
Sbjct: 1 METWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIGHQAVLMDLI 60
Query: 61 KKYKQNTQGLKSPENPKKAALVMQTEAARDYRDEESSSPARHGEQMPSFYPAENLDNGLI 120
KKYKQNTQGLKSPENPKKAALVMQTEAARDYRDEESSSPARHGEQMPSFYPAENLDNGLI
Sbjct: 61 KKYKQNTQGLKSPENPKKAALVMQTEAARDYRDEESSSPARHGEQMPSFYPAENLDNGLI 120
Query: 121 DQRVLKQRRNVKQILARSKALQWTKSYVLPEFPYDVKCMLAEQKCPDHSMRIRIIEFLQA 180
DQRVLKQRRNVKQILARSKALQWTKSYVLPEFPYDVKCMLAEQKCPDHSMRIRIIEFLQA
Sbjct: 121 DQRVLKQRRNVKQILARSKALQWTKSYVLPEFPYDVKCMLAEQKCPDHSMRIRIIEFLQA 180
Query: 181 DMTKYLEGSLYPSTQQYNDVVNALLQAHPFLDEDGCGF 218
DMTKYLEGSLYPSTQQYNDVVNALLQAHPFLDEDGCGF
Sbjct: 181 DMTKYLEGSLYPSTQQYNDVVNALLQAHPFLDEDGCGF 218
>gi|29788751 diacylglycerol kinase, eta isoform 2 [Homo sapiens]
Length = 1220
Score = 42.4 bits (98), Expect = 0.001
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 1 METWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQL-VKKIGHQAVLMDL 59
++ W E+V +WL NLGE F ++ GA LL L R ++ L + K+GH ++
Sbjct: 1148 VQKWGTEEVAAWLDLLNLGEYKDIFIRHDIRGAELLHLERRDLKDLGIPKVGHVKRILQG 1207
Query: 60 IKKYKQNT 67
IK+ ++T
Sbjct: 1208 IKELGRST 1215
>gi|93204861 protein phosphatase 1, regulatory (inhibitor) subunit 9A
[Homo sapiens]
Length = 1098
Score = 42.4 bits (98), Expect = 0.001
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 1 METWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQL-VKKIGHQAVLMDL 59
++ WSV+QV WL+ NL + V F + ++G LL L+ ++ L + +AV+
Sbjct: 985 VQEWSVQQVSHWLMSLNLEQYVSEFSAQNITGEQLLQLDGNKLKALGMTASQDRAVVKKK 1044
Query: 60 IKKYKQNTQ-GLKSPENPKKAALVMQTEAARDYRDEESSSPARHGEQMPS 108
+K+ K + + K+ E +K Q E R E+ ++ E+M S
Sbjct: 1045 LKEMKMSLEKARKAQEKMEK-----QREKLRRKEQEQMQRKSKKTEKMTS 1089
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens]
Length = 1747
Score = 38.5 bits (88), Expect = 0.015
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1 METWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLAL-NDRMVQQLVKKIGHQ 53
++ WS V WL +LGE RF++ E+ GA L AL D V+ V ++GH+
Sbjct: 1681 LQLWSKFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKDDFVELGVTRVGHR 1734
>gi|25777596 diacylglycerol kinase, delta 130kDa isoform 1 [Homo
sapiens]
Length = 1170
Score = 37.0 bits (84), Expect = 0.044
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 4 WSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQL-VKKIGHQAVLMDLIKK 62
W E+V +WL +L E F ++ G+ LL L R ++ L V K+GH ++ IK+
Sbjct: 1101 WGTEEVAAWLEHLSLCEYKDIFTRHDIRGSELLHLERRDLKDLGVTKVGHMKRILCGIKE 1160
Query: 63 YKQNTQGLKS 72
++ +++
Sbjct: 1161 LSRSAPAVEA 1170
>gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo
sapiens]
Length = 1214
Score = 37.0 bits (84), Expect = 0.044
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 4 WSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQL-VKKIGHQAVLMDLIKK 62
W E+V +WL +L E F ++ G+ LL L R ++ L V K+GH ++ IK+
Sbjct: 1145 WGTEEVAAWLEHLSLCEYKDIFTRHDIRGSELLHLERRDLKDLGVTKVGHMKRILCGIKE 1204
Query: 63 YKQNTQGLKS 72
++ +++
Sbjct: 1205 LSRSAPAVEA 1214
>gi|38016914 SAM domain- and HD domain-containing protein 1 [Homo
sapiens]
Length = 626
Score = 36.6 bits (83), Expect = 0.057
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 2 ETWSVEQVCSWLVEKNLGE--LVHRFQEEEVSGAALLALNDRMVQQL-VKKIGHQAVLMD 58
+TW EQVCS+L E L+ +E E++GA L L++ + L V +G + L+
Sbjct: 43 KTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLS 102
Query: 59 LIKKYKQ 65
I++ Q
Sbjct: 103 YIQRLVQ 109
>gi|29294627 PTPRF interacting protein binding protein 1 isoform 1
[Homo sapiens]
Length = 1005
Score = 36.6 bits (83), Expect = 0.057
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 4 WSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIGHQAVLMDLIKKY 63
W+ EQVC+WL+E+ LG ++ + SG LL + Q L K++G + L KK
Sbjct: 641 WTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQASQ---QDLEKELGIKHSLHR--KKL 695
Query: 64 KQNTQGLKSPENPKKAAL 81
+ Q L S E L
Sbjct: 696 QLALQALGSEEETNHGKL 713
>gi|117414154 sodium channel associated protein 2 isoform b [Homo
sapiens]
Length = 939
Score = 33.9 bits (76), Expect = 0.37
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 18/89 (20%)
Query: 232 VRRPIEDDEQVIRNKCKFGHRRGQTRKSLADIRFDEIKLVQIKEEAVCFDSELDEHIKWF 291
+R+ E D +R KCK + +T + L D C E DEHIK
Sbjct: 708 LRKTNESDSDALRIKCKIIDDQTETIRKLKD----------------CL-QEKDEHIKRL 750
Query: 292 QQEYVKTEKDWRE-IDKRMSQTLEIRRKM 319
Q++ + EK +E +D++ SQ E+ K+
Sbjct: 751 QEKITEIEKCTQEQLDEKSSQLDEVLEKL 779
>gi|117414162 sodium channel associated protein 2 isoform a [Homo
sapiens]
Length = 1032
Score = 33.9 bits (76), Expect = 0.37
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 18/89 (20%)
Query: 232 VRRPIEDDEQVIRNKCKFGHRRGQTRKSLADIRFDEIKLVQIKEEAVCFDSELDEHIKWF 291
+R+ E D +R KCK + +T + L D C E DEHIK
Sbjct: 801 LRKTNESDSDALRIKCKIIDDQTETIRKLKD----------------CL-QEKDEHIKRL 843
Query: 292 QQEYVKTEKDWRE-IDKRMSQTLEIRRKM 319
Q++ + EK +E +D++ SQ E+ K+
Sbjct: 844 QEKITEIEKCTQEQLDEKSSQLDEVLEKL 872
>gi|189571685 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 33.9 bits (76), Expect = 0.37
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 2 ETWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQ--LVKKIGHQAVLMDL 59
E WS E V +WL ++L +LV F+ + G LL L + ++ +G ++ ++
Sbjct: 330 EDWSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRK 389
Query: 60 IKKYKQNTQGLKS 72
I++ + + L S
Sbjct: 390 IEELRTKVKSLSS 402
>gi|189571683 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 33.9 bits (76), Expect = 0.37
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 2 ETWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQ--LVKKIGHQAVLMDL 59
E WS E V +WL ++L +LV F+ + G LL L + ++ +G ++ ++
Sbjct: 330 EDWSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRK 389
Query: 60 IKKYKQNTQGLKS 72
I++ + + L S
Sbjct: 390 IEELRTKVKSLSS 402
>gi|189571681 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 33.9 bits (76), Expect = 0.37
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 2 ETWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQ--LVKKIGHQAVLMDL 59
E WS E V +WL ++L +LV F+ + G LL L + ++ +G ++ ++
Sbjct: 330 EDWSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRK 389
Query: 60 IKKYKQNTQGLKS 72
I++ + + L S
Sbjct: 390 IEELRTKVKSLSS 402
>gi|18129632 sterile alpha motif domain containing 10 [Homo sapiens]
Length = 202
Score = 33.9 bits (76), Expect = 0.37
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 4 WSVEQVCSWLVE---KNLGELVHRFQEEEVSGAALLALNDRMVQQ--LVKKIGHQAVLMD 58
WS + VC WL + N V F + ++G ALL LN +Q+ L ++ Q VL
Sbjct: 118 WSQQDVCKWLKKHCPHNYLVYVEAFSQHAITGRALLRLNAEKLQRMGLAQEAQRQEVLQQ 177
Query: 59 LIK 61
+++
Sbjct: 178 VLR 180
>gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1
[Homo sapiens]
Length = 1849
Score = 33.1 bits (74), Expect = 0.63
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 4 WSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLAL-NDRMVQQLVKKIGHQAVLMDLIKK 62
W+ V WL NLGE F + E+ G+ L L + ++ V ++GH+ + +K+
Sbjct: 1786 WTKPDVADWLESLNLGEHKEAFMDNEIDGSHLPNLQKEDLIDLGVTRVGHRMNIERALKQ 1845
>gi|223005859 WD repeat domain 67 isoform 1 [Homo sapiens]
Length = 1066
Score = 32.7 bits (73), Expect = 0.82
Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 16/136 (11%)
Query: 270 LVQIKEEAVCFDSELDE--HIKWF--QQEY-VKTEKDWREIDKRMSQTLEIRRKMIGSRT 324
L+Q+ E F + +D+ H+ + Q++Y +K+ K R + + +S +I S T
Sbjct: 437 LLQLPENHTAFSTLIDKGTHVAFLNLQKKYPIKSRKLLRVLQRTLSALAHW--SVIFSDT 494
Query: 325 PLKDILKLFPFLKCPYQMFREFQLLT----RTDIYKKTRHILESYSENILTSFSVVDNPI 380
P +L FPF+K +F+ QL+ T I +H E + + S+++N +
Sbjct: 495 PYLPLLA-FPFVK----LFQNNQLICFEVIATLIINWCQHWFEYFPNPPINILSMIENVL 549
Query: 381 NIVLQEKMKHYTDEDM 396
+E ++H+ D D+
Sbjct: 550 AFHDKELLQHFIDHDI 565
>gi|223005857 WD repeat domain 67 isoform 2 [Homo sapiens]
Length = 970
Score = 32.7 bits (73), Expect = 0.82
Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 16/136 (11%)
Query: 270 LVQIKEEAVCFDSELDE--HIKWF--QQEY-VKTEKDWREIDKRMSQTLEIRRKMIGSRT 324
L+Q+ E F + +D+ H+ + Q++Y +K+ K R + + +S +I S T
Sbjct: 437 LLQLPENHTAFSTLIDKGTHVAFLNLQKKYPIKSRKLLRVLQRTLSALAHW--SVIFSDT 494
Query: 325 PLKDILKLFPFLKCPYQMFREFQLLT----RTDIYKKTRHILESYSENILTSFSVVDNPI 380
P +L FPF+K +F+ QL+ T I +H E + + S+++N +
Sbjct: 495 PYLPLLA-FPFVK----LFQNNQLICFEVIATLIINWCQHWFEYFPNPPINILSMIENVL 549
Query: 381 NIVLQEKMKHYTDEDM 396
+E ++H+ D D+
Sbjct: 550 AFHDKELLQHFIDHDI 565
>gi|28557802 sterile alpha motif domain containing 14 [Homo sapiens]
Length = 445
Score = 32.3 bits (72), Expect = 1.1
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 4 WSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIGHQAVLMDLIKKY 63
W+ +QV WL NL + F +V G LL L+ ++ L H L+K+
Sbjct: 354 WTSQQVGQWLQSLNLEQYAAEFAARQVDGPQLLQLDGSKLKSLGLSNSHDRA---LVKRK 410
Query: 64 KQNTQGLKSPENPKKAALVMQTEAARDYRDEESSS 98
+ E + Q E R E S
Sbjct: 411 LKEMAAAAEKERKAQEKAARQREKLRRREQEAKKS 445
>gi|93277096 limbin [Homo sapiens]
Length = 1308
Score = 32.0 bits (71), Expect = 1.4
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 46 LVKKIGHQAVLMDLIKKYKQNTQGLKSPENPKKAALVMQTEAARDYRDEESSSPARHGEQ 105
L K+ GH+ L+ ++ + QGL S + L+ + E A Y DE+ Q
Sbjct: 588 LSKRFGHREYLVQNLQSSETRVQGLLSTAAAQLTHLIQKHERA-GYLDEDQMEMLLERAQ 646
Query: 106 MPSFYPAENLDNGLIDQR-------VLKQRRNVKQ 133
F + LDN L ++ + K+RR + Q
Sbjct: 647 TEVFSIKQKLDNDLKQEKKKLHQKLITKRRRELLQ 681
>gi|219521928 DIS3 mitotic control homolog (S. cerevisiae)-like
isoform 1 [Homo sapiens]
Length = 1054
Score = 31.6 bits (70), Expect = 1.8
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 8 QVCSWLVEKNLGELVHRFQEEEVSGAALLALN---DRMVQQLVKKIGHQAVLMDLIKKYK 64
Q C +L + GE + ++Q + AA+ + DRM +V + + I++Y
Sbjct: 122 QQCCYLPRER-GESMEKWQTRSIYNAAVWYYHHCQDRMPIVMVTEDE------EAIQQYG 174
Query: 65 QNTQG---------LKSPENPKKAALVMQTEAARDYRDEESSSPARHGEQMPSFYPAENL 115
T+G L + KAA + + R+ E+ S HG++ P P E L
Sbjct: 175 SETEGVFVITFKNYLDNFWPDLKAAHELCDSILQSRRERENESQESHGKEYPEHLPLEVL 234
Query: 116 DNGLIDQRVLKQRRNVKQILARSKA 140
+ G+ R ++ NV + A+ +A
Sbjct: 235 EAGIKSGRYIQGILNVNKHRAQIEA 259
>gi|19115966 DIS3 mitotic control homolog (S. cerevisiae)-like
isoform 2 [Homo sapiens]
Length = 971
Score = 31.6 bits (70), Expect = 1.8
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 8 QVCSWLVEKNLGELVHRFQEEEVSGAALLALN---DRMVQQLVKKIGHQAVLMDLIKKYK 64
Q C +L + GE + ++Q + AA+ + DRM +V + + I++Y
Sbjct: 39 QQCCYLPRER-GESMEKWQTRSIYNAAVWYYHHCQDRMPIVMVTEDE------EAIQQYG 91
Query: 65 QNTQG---------LKSPENPKKAALVMQTEAARDYRDEESSSPARHGEQMPSFYPAENL 115
T+G L + KAA + + R+ E+ S HG++ P P E L
Sbjct: 92 SETEGVFVITFKNYLDNFWPDLKAAHELCDSILQSRRERENESQESHGKEYPEHLPLEVL 151
Query: 116 DNGLIDQRVLKQRRNVKQILARSKA 140
+ G+ R ++ NV + A+ +A
Sbjct: 152 EAGIKSGRYIQGILNVNKHRAQIEA 176
>gi|38348729 hypothetical protein LOC203238 [Homo sapiens]
Length = 1326
Score = 31.6 bits (70), Expect = 1.8
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 223 RALKDRFKYVRRPIEDDEQVIRNKCKFGHRRGQTRKSLADIRFDEIKLVQIKEEAVCFDS 282
R+ ++ + +R+ +E D V R + G R + R + A +I+E+ +S
Sbjct: 71 RSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAH---------RIQEKLCAQNS 121
Query: 283 ELDEHIKWFQQEYVKTEKDWREIDKRMSQTLEIRRKMIGSRTPLKDIL 330
EL ++ + +++ W+E +R LE R MI + D+L
Sbjct: 122 ELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLL 169
>gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo
sapiens]
Length = 1185
Score = 31.2 bits (69), Expect = 2.4
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 4 WSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIGHQAVLMDLIKKY 63
WS ++V W++ L E + E V G ALLAL++ + L L++
Sbjct: 1051 WSNDRVIRWILSIGLKEYANNLIESGVHG-ALLALDETF---------DFSALALLLQIP 1100
Query: 64 KQNTQGLKSPENPKKAALVMQTEAARDYRDEES 96
QNTQ E LVM T+ D D++S
Sbjct: 1101 TQNTQARAVLEREFNNLLVMGTDRRFDEDDDKS 1133
>gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo sapiens]
Length = 1202
Score = 31.2 bits (69), Expect = 2.4
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 4 WSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIGHQAVLMDLIKKY 63
WS ++V W++ L E + E V G ALLAL++ + L L++
Sbjct: 1051 WSNDRVIRWILSIGLKEYANNLIESGVHG-ALLALDETF---------DFSALALLLQIP 1100
Query: 64 KQNTQGLKSPENPKKAALVMQTEAARDYRDEES 96
QNTQ E LVM T+ D D++S
Sbjct: 1101 TQNTQARAVLEREFNNLLVMGTDRRFDEDDDKS 1133
>gi|100814339 coiled-coil domain containing 146 [Homo sapiens]
Length = 955
Score = 30.8 bits (68), Expect = 3.1
Identities = 23/106 (21%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 283 ELDEHIKWFQQEYVKTEKDWREIDKRMSQTLEIRRKMIGSRTPLKDILKLFPFLKCPYQM 342
EL + I + E +D K++ + + +++G + LKD ++ P Q+
Sbjct: 184 ELRKEIMQKKLEIKNLREDLASKQKQLLKEQKELEELLGHQVVLKD--EVAHHQTIPVQI 241
Query: 343 FREFQLLTRTDI-YKKTRHILESYSENILTSFSVVDNPINIVLQEK 387
+E + +TR + +K + +LE + + S V+N ++ ++ EK
Sbjct: 242 GKEIEKITRKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAIVDEK 287
>gi|34878777 ring finger protein 20 [Homo sapiens]
Length = 975
Score = 30.4 bits (67), Expect = 4.1
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 16/137 (11%)
Query: 14 VEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIGHQAVLMDLIKKYKQNTQGLKSP 73
+E L E + + + + + A L + +R Q + I ++K+Y QGL
Sbjct: 68 IEDELREHIEKLERRQATDDASLLIVNRYWSQFDENI------RIILKRYDLE-QGLGDL 120
Query: 74 ENPKKAALVMQTEAARDYRDEESSSPARHGEQMPSF--------YPAENLDNGLIDQRVL 125
+KA +V + E D E R Q P+F +E +++ L +RV
Sbjct: 121 LTERKALVVPEPEPDSDSNQERKDDRERGEGQEPAFSFLATLASSSSEEMESQL-QERVE 179
Query: 126 KQRRNVKQILARSKALQ 142
RR V QI+ LQ
Sbjct: 180 SSRRAVSQIVTVYDKLQ 196
>gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens]
Length = 2025
Score = 30.4 bits (67), Expect = 4.1
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 236 IEDDEQVIRNKCKFGHRRGQT--RKSLADIRFDEIKLVQIKEEAVCFDSELDEHIKWFQQ 293
IE + QV++++ + + + K L + R E KL + EE +ELD WF Q
Sbjct: 1495 IEKEHQVLQDQLQEVYENYEQIKLKGLEETRDLEEKLKRHLEENKISKTELD----WFLQ 1550
Query: 294 EYVKTEKDWREIDKRMSQTLEIRRKMI 320
+ + K W++ K + + L+ +K I
Sbjct: 1551 DLEREIKKWQQEKKEIQERLKSLKKKI 1577
>gi|71274154 Scm-like with four mbt domains 2 [Homo sapiens]
Length = 894
Score = 30.4 bits (67), Expect = 4.1
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 4 WSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVK-KIGHQAVLMDLIKK 62
W+V V ++ + L FQE+++ G ALL L VQ+ ++ K+G L I++
Sbjct: 824 WTVTDVVRFIKLTDCAPLAKIFQEQDIDGQALLLLTLPTVQECMELKLGPAIKLCHQIER 883
Query: 63 YK 64
K
Sbjct: 884 VK 885
>gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens]
Length = 2025
Score = 30.4 bits (67), Expect = 4.1
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 236 IEDDEQVIRNKCKFGHRRGQT--RKSLADIRFDEIKLVQIKEEAVCFDSELDEHIKWFQQ 293
IE + QV++++ + + + K L + R E KL + EE +ELD WF Q
Sbjct: 1495 IEKEHQVLQDQLQEVYENYEQIKLKGLEETRDLEEKLKRHLEENKISKTELD----WFLQ 1550
Query: 294 EYVKTEKDWREIDKRMSQTLEIRRKMI 320
+ + K W++ K + + L+ +K I
Sbjct: 1551 DLEREIKKWQQEKKEIQERLKSLKKKI 1577
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,744,531
Number of Sequences: 37866
Number of extensions: 778729
Number of successful extensions: 2214
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2188
Number of HSP's gapped (non-prelim): 57
length of query: 520
length of database: 18,247,518
effective HSP length: 107
effective length of query: 413
effective length of database: 14,195,856
effective search space: 5862888528
effective search space used: 5862888528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.