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Search of human proteins with 41393604
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41393604 reticulon 3 isoform c [Homo sapiens]
(255 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41393604 reticulon 3 isoform c [Homo sapiens] 491 e-139
gi|5174655 reticulon 3 isoform a [Homo sapiens] 445 e-125
gi|41393606 reticulon 3 isoform d [Homo sapiens] 380 e-106
gi|41393608 reticulon 3 isoform b [Homo sapiens] 363 e-101
gi|47519490 reticulon 4 isoform D [Homo sapiens] 254 7e-68
gi|47519562 reticulon 4 isoform E [Homo sapiens] 245 2e-65
gi|24431933 reticulon 4 isoform B [Homo sapiens] 245 2e-65
gi|24431935 reticulon 4 isoform A [Homo sapiens] 245 2e-65
gi|5902016 reticulon 4 isoform C [Homo sapiens] 244 5e-65
gi|45827776 reticulon 1 isoform C [Homo sapiens] 236 2e-62
gi|45827778 reticulon 1 isoform B [Homo sapiens] 235 2e-62
gi|10863935 reticulon 1 isoform A [Homo sapiens] 235 2e-62
gi|5032055 reticulon 2 isoform A [Homo sapiens] 173 1e-43
gi|46255007 reticulon 2 isoform C [Homo sapiens] 173 1e-43
gi|46255005 reticulon 2 isoform B [Homo sapiens] 171 6e-43
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 36 0.029
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 35 0.049
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 35 0.063
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 33 0.18
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 33 0.18
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 32 0.41
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens] 31 0.92
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 31 0.92
gi|67782356 corneodesmosin precursor [Homo sapiens] 31 0.92
gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens] 31 0.92
gi|13994287 BTE-binding protein 4 [Homo sapiens] 31 1.2
gi|197333809 joined to JAZF1 [Homo sapiens] 31 1.2
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 31 1.2
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 31 1.2
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 31 1.2
>gi|41393604 reticulon 3 isoform c [Homo sapiens]
Length = 255
Score = 491 bits (1263), Expect = e-139
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVS 60
MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVS
Sbjct: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVS 60
Query: 61 LFSTSQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK 120
LFSTSQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK
Sbjct: 61 LFSTSQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK 120
Query: 121 SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS 180
SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS
Sbjct: 121 SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS 180
Query: 181 LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVE 240
LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVE
Sbjct: 181 LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVE 240
Query: 241 KIQAKLPGIAKKKAE 255
KIQAKLPGIAKKKAE
Sbjct: 241 KIQAKLPGIAKKKAE 255
>gi|5174655 reticulon 3 isoform a [Homo sapiens]
Length = 236
Score = 445 bits (1145), Expect = e-125
Identities = 236/255 (92%), Positives = 236/255 (92%), Gaps = 19/255 (7%)
Query: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVS 60
MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA
Sbjct: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA------------- 47
Query: 61 LFSTSQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK 120
VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK
Sbjct: 48 ------VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK 101
Query: 121 SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS 180
SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS
Sbjct: 102 SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS 161
Query: 181 LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVE 240
LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVE
Sbjct: 162 LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVE 221
Query: 241 KIQAKLPGIAKKKAE 255
KIQAKLPGIAKKKAE
Sbjct: 222 KIQAKLPGIAKKKAE 236
>gi|41393606 reticulon 3 isoform d [Homo sapiens]
Length = 241
Score = 380 bits (977), Expect = e-106
Identities = 202/221 (91%), Positives = 202/221 (91%), Gaps = 19/221 (8%)
Query: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVS 60
MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA
Sbjct: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA------------- 47
Query: 61 LFSTSQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK 120
VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK
Sbjct: 48 ------VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK 101
Query: 121 SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS 180
SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS
Sbjct: 102 SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS 161
Query: 181 LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK 221
LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK
Sbjct: 162 LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK 202
>gi|41393608 reticulon 3 isoform b [Homo sapiens]
Length = 1013
Score = 363 bits (932), Expect = e-101
Identities = 190/195 (97%), Positives = 191/195 (97%)
Query: 61 LFSTSQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK 120
L + VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK
Sbjct: 819 LLTDFSVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK 878
Query: 121 SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS 180
SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS
Sbjct: 879 SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS 938
Query: 181 LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVE 240
LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVE
Sbjct: 939 LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVE 998
Query: 241 KIQAKLPGIAKKKAE 255
KIQAKLPGIAKKKAE
Sbjct: 999 KIQAKLPGIAKKKAE 1013
Score = 107 bits (267), Expect = 1e-23
Identities = 54/75 (72%), Positives = 60/75 (80%), Gaps = 6/75 (8%)
Query: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQP-- 58
MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA+ S S +P
Sbjct: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCAEGLSSLCSDEPSS 60
Query: 59 ----VSLFSTSQVHD 69
S S+S++H+
Sbjct: 61 EIMTSSFLSSSEIHN 75
>gi|47519490 reticulon 4 isoform D [Homo sapiens]
Length = 392
Score = 254 bits (648), Expect = 7e-68
Identities = 129/236 (54%), Positives = 172/236 (72%), Gaps = 6/236 (2%)
Query: 22 PSAPGGGGSPGACPALGTKSCSSSCADS--FVSSSSSQPVSLFSTSQVHDLIFWRDVKKT 79
P AP P PA + SS D F ++S+PV +S V DL++WRD+KKT
Sbjct: 161 PPAPAPAAPPST-PAAPKRRGSSGSVDETLFALPAASEPV--IRSSAVVDLLYWRDIKKT 217
Query: 80 GFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYL 139
G VFG +L +LLSL FS++SV +Y+ LALLSVTISFRIYK VIQA+QKS+EGHPF+AYL
Sbjct: 218 GVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYL 277
Query: 140 DVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNG 199
+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK AV MW+ TYVGA+FNG
Sbjct: 278 ESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNG 337
Query: 200 ITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE 255
+TLLILA + +FSVP++YE+++ QIDHY+G+A K + KIQAK+PG+ K+KAE
Sbjct: 338 LTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKIPGL-KRKAE 392
>gi|47519562 reticulon 4 isoform E [Homo sapiens]
Length = 986
Score = 245 bits (626), Expect = 2e-65
Identities = 116/193 (60%), Positives = 155/193 (80%), Gaps = 1/193 (0%)
Query: 63 STSQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSV 122
S + V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFRIYK V
Sbjct: 795 SKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGV 854
Query: 123 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLK 182
IQA+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK
Sbjct: 855 IQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLK 914
Query: 183 LAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKI 242
AV MW+ TYVGA+FNG+TLLILA + +FSVP++YE+++ QIDHY+G+A K + KI
Sbjct: 915 FAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKI 974
Query: 243 QAKLPGIAKKKAE 255
QAK+PG+ K+KAE
Sbjct: 975 QAKIPGL-KRKAE 986
>gi|24431933 reticulon 4 isoform B [Homo sapiens]
Length = 373
Score = 245 bits (626), Expect = 2e-65
Identities = 117/193 (60%), Positives = 155/193 (80%), Gaps = 1/193 (0%)
Query: 63 STSQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSV 122
S S V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFRIYK V
Sbjct: 182 SGSVVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGV 241
Query: 123 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLK 182
IQA+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK
Sbjct: 242 IQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLK 301
Query: 183 LAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKI 242
AV MW+ TYVGA+FNG+TLLILA + +FSVP++YE+++ QIDHY+G+A K + KI
Sbjct: 302 FAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKI 361
Query: 243 QAKLPGIAKKKAE 255
QAK+PG+ K+KAE
Sbjct: 362 QAKIPGL-KRKAE 373
>gi|24431935 reticulon 4 isoform A [Homo sapiens]
Length = 1192
Score = 245 bits (626), Expect = 2e-65
Identities = 116/193 (60%), Positives = 155/193 (80%), Gaps = 1/193 (0%)
Query: 63 STSQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSV 122
S + V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFRIYK V
Sbjct: 1001 SKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGV 1060
Query: 123 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLK 182
IQA+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK
Sbjct: 1061 IQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLK 1120
Query: 183 LAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKI 242
AV MW+ TYVGA+FNG+TLLILA + +FSVP++YE+++ QIDHY+G+A K + KI
Sbjct: 1121 FAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKI 1180
Query: 243 QAKLPGIAKKKAE 255
QAK+PG+ K+KAE
Sbjct: 1181 QAKIPGL-KRKAE 1192
>gi|5902016 reticulon 4 isoform C [Homo sapiens]
Length = 199
Score = 244 bits (623), Expect = 5e-65
Identities = 115/190 (60%), Positives = 154/190 (81%), Gaps = 1/190 (0%)
Query: 66 QVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQA 125
+V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFRIYK VIQA
Sbjct: 11 KVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQA 70
Query: 126 VQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAV 185
+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK AV
Sbjct: 71 IQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAV 130
Query: 186 FMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAK 245
MW+ TYVGA+FNG+TLLILA + +FSVP++YE+++ QIDHY+G+A K + KIQAK
Sbjct: 131 LMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAK 190
Query: 246 LPGIAKKKAE 255
+PG+ K+KAE
Sbjct: 191 IPGL-KRKAE 199
>gi|45827776 reticulon 1 isoform C [Homo sapiens]
Length = 208
Score = 236 bits (601), Expect = 2e-62
Identities = 114/191 (59%), Positives = 152/191 (79%), Gaps = 1/191 (0%)
Query: 65 SQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQ 124
SQ DL++WRD+K+TG VFG+ L++L SL FSV+SVV+YL LA LS TISFRIYKSV+Q
Sbjct: 19 SQAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQ 78
Query: 125 AVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLA 184
AVQK++EGHPFKAYL+++ITLS E Y + ++N LK + RLFLV+DLVDSLK A
Sbjct: 79 AVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFA 138
Query: 185 VFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQA 244
V MWL+TYVGA+FNG+TLL++A + +F++P+VY K++ QID Y+G+ R ++V KIQA
Sbjct: 139 VLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQA 198
Query: 245 KLPGIAKKKAE 255
K+PG AK+ AE
Sbjct: 199 KIPG-AKRHAE 208
>gi|45827778 reticulon 1 isoform B [Homo sapiens]
Length = 356
Score = 235 bits (600), Expect = 2e-62
Identities = 120/240 (50%), Positives = 166/240 (69%), Gaps = 10/240 (4%)
Query: 25 PGGGGSPGACPALGTKSCSSSCADSFVSSSSSQ---------PVSLFSTSQVHDLIFWRD 75
PG G P L K S ++ +++ P+ + + DL++WRD
Sbjct: 118 PGDGALEPETPMLPRKPEEDSSSNQSPAATKGPGPLGPGAPPPLLFLNKQKAIDLLYWRD 177
Query: 76 VKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPF 135
+K+TG VFG+ L++L SL FSV+SVV+YL LA LS TISFRIYKSV+QAVQK++EGHPF
Sbjct: 178 IKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKTDEGHPF 237
Query: 136 KAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGA 195
KAYL+++ITLS E Y + ++N LK + RLFLV+DLVDSLK AV MWL+TYVGA
Sbjct: 238 KAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGA 297
Query: 196 VFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE 255
+FNG+TLL++A + +F++P+VY K++ QID Y+G+ R ++V KIQAK+PG AK+ AE
Sbjct: 298 LFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQAKIPG-AKRHAE 356
>gi|10863935 reticulon 1 isoform A [Homo sapiens]
Length = 776
Score = 235 bits (600), Expect = 2e-62
Identities = 120/240 (50%), Positives = 166/240 (69%), Gaps = 10/240 (4%)
Query: 25 PGGGGSPGACPALGTKSCSSSCADSFVSSSSSQ---------PVSLFSTSQVHDLIFWRD 75
PG G P L K S ++ +++ P+ + + DL++WRD
Sbjct: 538 PGDGALEPETPMLPRKPEEDSSSNQSPAATKGPGPLGPGAPPPLLFLNKQKAIDLLYWRD 597
Query: 76 VKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPF 135
+K+TG VFG+ L++L SL FSV+SVV+YL LA LS TISFRIYKSV+QAVQK++EGHPF
Sbjct: 598 IKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKTDEGHPF 657
Query: 136 KAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGA 195
KAYL+++ITLS E Y + ++N LK + RLFLV+DLVDSLK AV MWL+TYVGA
Sbjct: 658 KAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGA 717
Query: 196 VFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE 255
+FNG+TLL++A + +F++P+VY K++ QID Y+G+ R ++V KIQAK+PG AK+ AE
Sbjct: 718 LFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQAKIPG-AKRHAE 776
>gi|5032055 reticulon 2 isoform A [Homo sapiens]
Length = 545
Score = 173 bits (438), Expect = 1e-43
Identities = 83/184 (45%), Positives = 127/184 (69%)
Query: 65 SQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQ 124
S+V DL++W+D + +G VF ++ LL L FS++SV ++L L LL TIS R+Y+ V+Q
Sbjct: 343 SKVADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQ 402
Query: 125 AVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLA 184
AV + + +PF+AYLDVD+TL+ E + + A + FLVEDLVDSLKLA
Sbjct: 403 AVHRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLA 462
Query: 185 VFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQA 244
+ +++T+VGA+FNG+TLLIL + +F++P++Y +++ QID YVG+ +Q I KI+A
Sbjct: 463 LLFYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRA 522
Query: 245 KLPG 248
K+PG
Sbjct: 523 KIPG 526
>gi|46255007 reticulon 2 isoform C [Homo sapiens]
Length = 205
Score = 173 bits (438), Expect = 1e-43
Identities = 83/184 (45%), Positives = 127/184 (69%)
Query: 65 SQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQ 124
S+V DL++W+D + +G VF ++ LL L FS++SV ++L L LL TIS R+Y+ V+Q
Sbjct: 3 SKVADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQ 62
Query: 125 AVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLA 184
AV + + +PF+AYLDVD+TL+ E + + A + FLVEDLVDSLKLA
Sbjct: 63 AVHRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLA 122
Query: 185 VFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQA 244
+ +++T+VGA+FNG+TLLIL + +F++P++Y +++ QID YVG+ +Q I KI+A
Sbjct: 123 LLFYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRA 182
Query: 245 KLPG 248
K+PG
Sbjct: 183 KIPG 186
>gi|46255005 reticulon 2 isoform B [Homo sapiens]
Length = 472
Score = 171 bits (433), Expect = 6e-43
Identities = 82/182 (45%), Positives = 125/182 (68%)
Query: 67 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 126
V DL++W+D + +G VF ++ LL L FS++SV ++L L LL TIS R+Y+ V+QAV
Sbjct: 272 VADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQAV 331
Query: 127 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 186
+ + +PF+AYLDVD+TL+ E + + A + FLVEDLVDSLKLA+
Sbjct: 332 HRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLALL 391
Query: 187 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 246
+++T+VGA+FNG+TLLIL + +F++P++Y +++ QID YVG+ +Q I KI+AK+
Sbjct: 392 FYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAKI 451
Query: 247 PG 248
PG
Sbjct: 452 PG 453
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 36.2 bits (82), Expect = 0.029
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 2 AEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVSL 61
A P++++ S S SSSS + S+ S + + + S SSS + S SSSSS S
Sbjct: 2610 ASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2669
Query: 62 FSTS 65
ST+
Sbjct: 2670 SSTT 2673
Score = 32.7 bits (73), Expect = 0.32
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 2 AEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVSL 61
A AA+ + S SSSS + S+ S + + + S SSS + S SSSSS S
Sbjct: 2605 ASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2664
Query: 62 FSTS 65
S+S
Sbjct: 2665 SSSS 2668
Score = 32.3 bits (72), Expect = 0.41
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 2 AEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVSL 61
A A++ S S SSSS + S+ S + + + S SSS + S SSSSS S
Sbjct: 2609 AASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2668
Query: 62 FSTSQVHD 69
S++ D
Sbjct: 2669 SSSTTDED 2676
Score = 31.2 bits (69), Expect = 0.92
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 5 SAATQSHSISSSSFGAEP--------SAPGGGGSPGA-CPALGTKSCSSSCADSFVSSSS 55
S+ + S S SSSS G+E + GG G+ G C A +++ S + + S SSSS
Sbjct: 2564 SSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSS 2623
Query: 56 SQPVSLFSTS 65
S S S+S
Sbjct: 2624 SSSSSSSSSS 2633
Score = 31.2 bits (69), Expect = 0.92
Identities = 23/64 (35%), Positives = 30/64 (46%)
Query: 2 AEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVSL 61
A S A S SSSS + S+ S + + + S SSS + S SSSSS S
Sbjct: 2604 AASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2663
Query: 62 FSTS 65
S+S
Sbjct: 2664 SSSS 2667
Score = 28.5 bits (62), Expect = 5.9
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 5 SAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVSLFST 64
SAA+ + +SS + S+ S + + + S SSS + S SSSSS S S+
Sbjct: 2603 SAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2662
Query: 65 S 65
S
Sbjct: 2663 S 2663
Score = 28.5 bits (62), Expect = 5.9
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 5 SAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVSLFST 64
S+++ S S SSSS + S+ S + + + S SSS + S SSS++ S S+
Sbjct: 2622 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSS 2681
Score = 28.5 bits (62), Expect = 5.9
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 5 SAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVSLFST 64
S+++ S S SSSS + S+ S + + + S SSS + S SS++ + S S
Sbjct: 2623 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSD 2682
Query: 65 SQ 66
+
Sbjct: 2683 DE 2684
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 35.4 bits (80), Expect = 0.049
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 8 TQSHSISSSSFGAEPSAPGG--------GGSPGACPALGTKSCSSSCADSFVSSSSSQPV 59
TQ SSSS P+ PG G SPG CPA S S + +++SSS+ V
Sbjct: 1409 TQGEDYSSSSLEPHPADPGMETGEALSFGASPGRCPARPPPSGSQGLLEEMLAASSSKAV 1468
Query: 60 S 60
+
Sbjct: 1469 A 1469
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 35.0 bits (79), Expect = 0.063
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 20 AEPSAPGG----GGSPG--ACPALGTKSCSSSCADSFVSSSSSQPVSLFSTSQVHDL 70
A P APGG GG+PG A + + S SSS A+ V + +P S+ ST Q +L
Sbjct: 288 APPGAPGGPACLGGTPGVSATSSSASSSTSSSVAEVGVGAGGKRPGSVSSTDQEREL 344
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 33.5 bits (75), Expect = 0.18
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVS 60
M S + + S+S+ + S G GGS G + + S SSS + S SSSSS P S
Sbjct: 420 MYSDSDSEPTGSVSNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSS 479
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 33.5 bits (75), Expect = 0.18
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 1 MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVS 60
M S + + S+S+ + S G GGS G + + S SSS + S SSSSS P S
Sbjct: 420 MYSDSDSEPTGSVSNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSS 479
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 32.3 bits (72), Expect = 0.41
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 10 SHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVSL 61
S ++++++ A P PGG SP SSS A S SSSSS P SL
Sbjct: 846 SAALTAAAVAAPPHCPGGSASP-----------SSSKASSSSSSSSSPPASL 886
>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 31.2 bits (69), Expect = 0.92
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 5 SAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSS 56
+ + QS SS+S+ + S G S +C + GT S S SC S SS+ S
Sbjct: 189 TCSCQSSGTSSTSYSCQSS---GTSSTCSCQSSGTSSTSCSCQSSGTSSTCS 237
Score = 29.6 bits (65), Expect = 2.7
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 5 SAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVSLFST 64
+ + QS SS+S + S G S +C + GT S S SC S SS+ S S S+
Sbjct: 258 TCSCQSSGTSSTSCSCQSS---GTSSTCSCQSSGTSSTSCSCQSSRTSSTCSCQFSRTSS 314
Query: 65 S 65
+
Sbjct: 315 T 315
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 31.2 bits (69), Expect = 0.92
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 5 SAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSS 56
+ + QS SS+S+ + S G S +C + GT S S SC S SS+ S
Sbjct: 189 TCSCQSSGTSSTSYSCQSS---GTSSTCSCQSSGTSSTSCSCQSSGTSSTCS 237
Score = 29.3 bits (64), Expect = 3.5
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 5 SAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVSLFST 64
+ + QS SS+S + S G S +C + GT S S SC S SS+ S S S+
Sbjct: 258 TCSCQSSRTSSTSCSCQSS---GTSSTCSCQSSGTSSTSCSCQSSRTSSTCSCQFSRTSS 314
Query: 65 S 65
+
Sbjct: 315 T 315
Score = 28.1 bits (61), Expect = 7.8
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 1 MAEPSAATQSHSISSSSFGAEPSAPGG--------GGSPGACPALGTKSCSSSCADSFVS 52
MAE AA + H SSSS + S S +C + GT S S + S +S
Sbjct: 1 MAERKAACKQHRASSSSCSCQSSQTSSTCSCQSSQTSSTCSCQSSGTSSTSCNWQSSRIS 60
Query: 53 SSSS 56
S+ S
Sbjct: 61 STCS 64
>gi|67782356 corneodesmosin precursor [Homo sapiens]
Length = 529
Score = 31.2 bits (69), Expect = 0.92
Identities = 24/77 (31%), Positives = 30/77 (38%)
Query: 4 PSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVSLFS 63
PS++ S S SS P P G S C GT S SSS + QP S
Sbjct: 393 PSSSRVPSSSSISSSSGLPYHPCGSASQSPCSPPGTGSFSSSSSSQSSGKIILQPCGSKS 452
Query: 64 TSQVHDLIFWRDVKKTG 80
+S H + + TG
Sbjct: 453 SSSGHPCMSVSSLTLTG 469
>gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]
Length = 1104
Score = 31.2 bits (69), Expect = 0.92
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 4 PSAATQSHSISSSSFGAEPSA------PGGGG-SPGACPALGTKSCSSSCADSFVSSSSS 56
P + + S SS GA P+A PGGG S GAC A + S SSC +++++
Sbjct: 264 PGSGSGSGPGPSSGPGAAPAADKEREAPGGGAASGGACSAASSASGGSSCCAPPAAAAAA 323
Query: 57 QPVSLFSTSQVH 68
P + + H
Sbjct: 324 VPPAAAANHHHH 335
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 30.8 bits (68), Expect = 1.2
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 4 PSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKS--CS-SSCADSFVSSS 54
P AA S +SSS A S+P G +PGA P+ KS C CA ++ SS
Sbjct: 91 PGAAPGGASPASSSSAA--SSPSSGRAPGAAPSAAAKSHRCPFPDCAKAYYKSS 142
>gi|197333809 joined to JAZF1 [Homo sapiens]
Length = 739
Score = 30.8 bits (68), Expect = 1.2
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 6/147 (4%)
Query: 4 PSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVSLFS 63
PSA + S+ A +A GG G+C G+ S SSS + + + ++ PV
Sbjct: 16 PSAGSGGGGFGGSAAVAAATASGGKSGGGSCGGGGSYSASSSSSAAAAAGAAVLPVKKPK 75
Query: 64 TSQV---HDLIFWRDVKKTG-FVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRI- 118
V H+L K T + F T ++ + ++ +S+ +F++
Sbjct: 76 MEHVQADHELFLQAFEKPTQIYRFLRTRNLIAPIFLHRTLTYMSHRNSRTNIKRKTFKVD 135
Query: 119 -YKSVIQAVQKSEEGHPFKAYLDVDIT 144
S ++ ++ +E H A+L + T
Sbjct: 136 DMLSKVEKMKGEQESHSLSAHLQLTFT 162
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 5 SAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSS 56
S++T+S S S+SS G+ S GS + + ++S SSS + S SSSSS
Sbjct: 72 SSSTRSRSSSTSSSGSSTSTGSSSGSSSS--SASSRSGSSSTSRSSSSSSSS 121
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 5 SAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSS 56
S++T+S S S+SS G+ S GS + + ++S SSS + S SSSSS
Sbjct: 72 SSSTRSRSSSTSSSGSSTSTGSSSGSSSS--SASSRSGSSSTSRSSSSSSSS 121
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 5 SAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSS 56
S++T+S S S+SS G+ S GS + + ++S SSS + S SSSSS
Sbjct: 72 SSSTRSRSSSTSSSGSSTSTGSSSGSSSS--SASSRSGSSSTSRSSSSSSSS 121
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.133 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,379,996
Number of Sequences: 37866
Number of extensions: 335649
Number of successful extensions: 3233
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2792
Number of HSP's gapped (non-prelim): 339
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.