Guide to the Human Genome
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Search of human proteins with 41349499

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41349499 proteolipid protein 1 isoform 1 [Homo sapiens]
         (277 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41349499 proteolipid protein 1 isoform 1 [Homo sapiens]            575   e-164
gi|192449447 proteolipid protein 1 isoform 1 [Homo sapiens]           575   e-164
gi|41349501 proteolipid protein 1 isoform 2 [Homo sapiens]            479   e-135
gi|50263053 glycoprotein M6B isoform 4 [Homo sapiens]                 278   5e-75
gi|50263050 glycoprotein M6B isoform 2 [Homo sapiens]                 276   2e-74
gi|24307895 glycoprotein M6B isoform 3 [Homo sapiens]                 276   2e-74
gi|50263048 glycoprotein M6B isoform 1 [Homo sapiens]                 263   1e-70
gi|42476105 glycoprotein M6A isoform 3 [Homo sapiens]                 203   2e-52
gi|42476108 glycoprotein M6A isoform 2 [Homo sapiens]                 201   6e-52
gi|14149619 glycoprotein M6A isoform 1 [Homo sapiens]                 201   6e-52
gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens]      31   1.0  
gi|223718080 transmembrane channel-like 4 isoform 1 [Homo sapiens]     31   1.0  
gi|115298678 complement component 3 precursor [Homo sapiens]           29   3.9  
gi|169214179 PREDICTED: similar to complement component 3 [Homo ...    29   3.9  
gi|119703742 vitelliform macular dystrophy 2-like 1 [Homo sapiens]     29   5.2  
gi|222418585 zinc finger protein 814 [Homo sapiens]                    28   6.7  
gi|239757378 PREDICTED: similar to zinc finger protein 587 [Homo...    28   6.7  
gi|46358076 zinc finger protein 552 [Homo sapiens]                     28   6.7  
gi|17738287 secretory carrier membrane protein 4 [Homo sapiens]        28   8.8  

>gi|41349499 proteolipid protein 1 isoform 1 [Homo sapiens]
          Length = 277

 Score =  575 bits (1481), Expect = e-164
 Identities = 277/277 (100%), Positives = 277/277 (100%)

Query: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
           MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
           LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120

Query: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
           QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180

Query: 181 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
           WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
Sbjct: 181 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240

Query: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
           IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
Sbjct: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277


>gi|192449447 proteolipid protein 1 isoform 1 [Homo sapiens]
          Length = 277

 Score =  575 bits (1481), Expect = e-164
 Identities = 277/277 (100%), Positives = 277/277 (100%)

Query: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
           MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
           LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120

Query: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
           QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180

Query: 181 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
           WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
Sbjct: 181 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240

Query: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
           IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
Sbjct: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277


>gi|41349501 proteolipid protein 1 isoform 2 [Homo sapiens]
          Length = 242

 Score =  479 bits (1232), Expect = e-135
 Identities = 242/277 (87%), Positives = 242/277 (87%), Gaps = 35/277 (12%)

Query: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
           MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
Sbjct: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60

Query: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
           LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSAT    
Sbjct: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSAT---- 116

Query: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
                                          FVGITYALTVVWLLVFACSAVPVYIYFNT
Sbjct: 117 -------------------------------FVGITYALTVVWLLVFACSAVPVYIYFNT 145

Query: 181 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
           WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
Sbjct: 146 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 205

Query: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
           IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
Sbjct: 206 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 242


>gi|50263053 glycoprotein M6B isoform 4 [Homo sapiens]
          Length = 246

 Score =  278 bits (710), Expect = 5e-75
 Identities = 137/274 (50%), Positives = 173/274 (63%), Gaps = 36/274 (13%)

Query: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
           MG  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  
Sbjct: 1   MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHAL 60

Query: 61  LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
           L  VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S      
Sbjct: 61  LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 116

Query: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
                                          FV +TY L V WL VF  SAVPV++++N 
Sbjct: 117 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 145

Query: 181 WTTCQSIAFPSKTSAS-IGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
           W+TC+ I  P     + +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 146 WSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 205

Query: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGR 273
           FI A  GA AT+++LL +M+A TYN+AVLK   R
Sbjct: 206 FIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 239


>gi|50263050 glycoprotein M6B isoform 2 [Homo sapiens]
          Length = 305

 Score =  276 bits (705), Expect = 2e-74
 Identities = 136/273 (49%), Positives = 172/273 (63%), Gaps = 36/273 (13%)

Query: 2   GLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYL 61
           G  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  L
Sbjct: 61  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120

Query: 62  INVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQ 121
             VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S       
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM----- 175

Query: 122 KGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNTW 181
                                         FV +TY L V WL VF  SAVPV++++N W
Sbjct: 176 ------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNIW 205

Query: 182 TTCQSIAFPSKTSAS-IGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
           +TC+ I  P     + +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HLF
Sbjct: 206 STCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLF 265

Query: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGR 273
           I A  GA AT+++LL +M+A TYN+AVLK   R
Sbjct: 266 IVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298


>gi|24307895 glycoprotein M6B isoform 3 [Homo sapiens]
          Length = 265

 Score =  276 bits (705), Expect = 2e-74
 Identities = 136/273 (49%), Positives = 172/273 (63%), Gaps = 36/273 (13%)

Query: 2   GLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYL 61
           G  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  L
Sbjct: 21  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 80

Query: 62  INVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQ 121
             VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S       
Sbjct: 81  SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM----- 135

Query: 122 KGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNTW 181
                                         FV +TY L V WL VF  SAVPV++++N W
Sbjct: 136 ------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNIW 165

Query: 182 TTCQSIAFPSKTSAS-IGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
           +TC+ I  P     + +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HLF
Sbjct: 166 STCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLF 225

Query: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGR 273
           I A  GA AT+++LL +M+A TYN+AVLK   R
Sbjct: 226 IVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258


>gi|50263048 glycoprotein M6B isoform 1 [Homo sapiens]
          Length = 328

 Score =  263 bits (672), Expect = 1e-70
 Identities = 130/269 (48%), Positives = 168/269 (62%), Gaps = 36/269 (13%)

Query: 2   GLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYL 61
           G  ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT  ++E +FS N  D+  L
Sbjct: 61  GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120

Query: 62  INVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQ 121
             VI   QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S       
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM----- 175

Query: 122 KGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNTW 181
                                         FV +TY L V WL VF  SAVPV++++N W
Sbjct: 176 ------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNIW 205

Query: 182 TTCQSIAFPSKTSAS-IGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
           +TC+ I  P     + +  +C D R YG++PWNAFPGK+CGS L +IC T EF M++HLF
Sbjct: 206 STCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLF 265

Query: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLK 269
           I A  GA AT+++L+ F++  + N+A LK
Sbjct: 266 IVACAGAGATVIALIHFLMILSSNWAYLK 294


>gi|42476105 glycoprotein M6A isoform 3 [Homo sapiens]
          Length = 267

 Score =  203 bits (516), Expect = 2e-52
 Identities = 107/281 (38%), Positives = 160/281 (56%), Gaps = 45/281 (16%)

Query: 1   MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDY 58
           MG  ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT  +++TYF  ++   D 
Sbjct: 1   MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDT 60

Query: 59  EYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVT 118
             +  +I  F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+       
Sbjct: 61  LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR------- 113

Query: 119 GGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYF 178
                                 C+  W      F+ +TY   + WL V A +++PVY+YF
Sbjct: 114 ----------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPVYMYF 145

Query: 179 NTWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAEFQMT 236
           N WT C++      T     +LC D R +G++       K+C    N L +C++ E  MT
Sbjct: 146 NLWTICRNT-----TLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTELNMT 199

Query: 237 FHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
           FHLFI A  GA A +++++ +++  + N+A +K   R  K+
Sbjct: 200 FHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKY 240


>gi|42476108 glycoprotein M6A isoform 2 [Homo sapiens]
          Length = 278

 Score =  201 bits (511), Expect = 6e-52
 Identities = 106/280 (37%), Positives = 159/280 (56%), Gaps = 45/280 (16%)

Query: 2   GLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDYE 59
           G  ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT  +++TYF  ++   D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 60  YLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTG 119
            +  +I  F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+        
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR-------- 124

Query: 120 GQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFN 179
                                C+  W      F+ +TY   + WL V A +++PVY+YFN
Sbjct: 125 ---------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPVYMYFN 157

Query: 180 TWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAEFQMTF 237
            WT C++      T     +LC D R +G++       K+C    N L +C++ E  MTF
Sbjct: 158 LWTICRNT-----TLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTELNMTF 211

Query: 238 HLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
           HLFI A  GA A +++++ +++  + N+A +K   R  K+
Sbjct: 212 HLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKY 251


>gi|14149619 glycoprotein M6A isoform 1 [Homo sapiens]
          Length = 278

 Score =  201 bits (511), Expect = 6e-52
 Identities = 106/280 (37%), Positives = 159/280 (56%), Gaps = 45/280 (16%)

Query: 2   GLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDYE 59
           G  ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT  +++TYF  ++   D  
Sbjct: 13  GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72

Query: 60  YLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTG 119
            +  +I  F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+        
Sbjct: 73  DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR-------- 124

Query: 120 GQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFN 179
                                C+  W      F+ +TY   + WL V A +++PVY+YFN
Sbjct: 125 ---------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPVYMYFN 157

Query: 180 TWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAEFQMTF 237
            WT C++      T     +LC D R +G++       K+C    N L +C++ E  MTF
Sbjct: 158 LWTICRNT-----TLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTELNMTF 211

Query: 238 HLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
           HLFI A  GA A +++++ +++  + N+A +K   R  K+
Sbjct: 212 HLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKY 251


>gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens]
          Length = 706

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 149 PDKFVGITYALTVVWLLVFACSAVPV 174
           PD+ +G+ YA TVVW+  F C  +P+
Sbjct: 523 PDEVLGLIYAQTVVWVGSFFCPLLPL 548


>gi|223718080 transmembrane channel-like 4 isoform 1 [Homo sapiens]
          Length = 712

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 149 PDKFVGITYALTVVWLLVFACSAVPV 174
           PD+ +G+ YA TVVW+  F C  +P+
Sbjct: 529 PDEVLGLIYAQTVVWVGSFFCPLLPL 554


>gi|115298678 complement component 3 precursor [Homo sapiens]
          Length = 1663

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 171  AVPVYIYFNTWTTCQSIAFPSKTSASIGSLCAD 203
            AV VY Y+N   +C     P K    +  LC D
Sbjct: 1476 AVKVYAYYNLEESCTRFYHPEKEDGKLNKLCRD 1508


>gi|169214179 PREDICTED: similar to complement component 3 [Homo
           sapiens]
          Length = 390

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 171 AVPVYIYFNTWTTCQSIAFPSKTSASIGSLCAD 203
           AV VY Y+N   +C     P K    +  LC D
Sbjct: 203 AVKVYAYYNLEESCTRFYHPEKEDGKLNKLCRD 235


>gi|119703742 vitelliform macular dystrophy 2-like 1 [Homo sapiens]
          Length = 509

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 20/114 (17%)

Query: 24  LCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYLINVIHAFQYVIYGTASFFFLYG 83
           LCF G  +       AL+   + + T   K Y  +E L  VI+  QY      SF     
Sbjct: 37  LCFLGFYM-------ALSAAYRFVLTEGQKRY--FEKL--VIYCDQYASLIPVSFVL--- 82

Query: 84  ALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQKGRGSRGQHQAHSLER 137
                 GFY T  V + +  Y        L   V G   GR  RG+    +L R
Sbjct: 83  ------GFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDRGRLYRRTLMR 130


>gi|222418585 zinc finger protein 814 [Homo sapiens]
          Length = 855

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 181 WTTCQSIAFPSKTSASIG-SLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFH 238
           W   +  A PSK S  I         M GV P  A P ++CG  L  I   A+ Q T H
Sbjct: 57  WCGVEDEAAPSKQSIYIQRETQVRTPMAGVSPKKAHPCEMCGPILGDILHVADHQGTHH 115


>gi|239757378 PREDICTED: similar to zinc finger protein 587 [Homo
           sapiens]
          Length = 577

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 181 WTTCQSIAFPSKTSASIG-SLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFH 238
           W   +  A PSK S  I         M GV P  A P ++CG  L  I   A+ Q T H
Sbjct: 57  WCGVEDEAAPSKQSIYIQRETQVRTPMTGVSPKKAHPCEMCGPILGDILHVADHQGTHH 115


>gi|46358076 zinc finger protein 552 [Homo sapiens]
          Length = 407

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 181 WTTCQSIAFPSKTSASIG-SLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFH 238
           W   +  A PSK S  I         M GV P  A P ++CG  L  I   A+ Q T H
Sbjct: 56  WCGVEDEAAPSKQSIYIQRETQVRTPMAGVSPKKAHPCEMCGPILGDILHVADHQGTHH 114


>gi|17738287 secretory carrier membrane protein 4 [Homo sapiens]
          Length = 229

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 141 CLGKWLGHPDKFVGITYALTVVWLLVF-----ACSAVPVYIYFNTWTTCQSIAF 189
           CL  W+G      G  + L  VWLL+F      C   PVY  F   ++   +AF
Sbjct: 58  CLAWWIGGGS---GTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAF 108


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.141    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,170,442
Number of Sequences: 37866
Number of extensions: 427006
Number of successful extensions: 1374
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 26
length of query: 277
length of database: 18,247,518
effective HSP length: 101
effective length of query: 176
effective length of database: 14,423,052
effective search space: 2538457152
effective search space used: 2538457152
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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