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Search of human proteins with 40556361
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40556361 WD repeat domain 93 [Homo sapiens]
(686 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40556361 WD repeat domain 93 [Homo sapiens] 1417 0.0
gi|194294523 intersectin 2 isoform 3 [Homo sapiens] 36 0.10
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 36 0.10
gi|194294525 intersectin 2 isoform 2 [Homo sapiens] 36 0.10
gi|167003762 hypothetical protein LOC645090 [Homo sapiens] 32 2.0
gi|45238854 basic leucine zipper transcription factor, ATF-like ... 32 2.0
gi|228008407 serine active site containing 1 [Homo sapiens] 31 3.3
gi|215820619 zinc finger protein 646 [Homo sapiens] 31 3.3
gi|33946327 nucleoporin 214kDa [Homo sapiens] 31 4.4
gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [H... 31 4.4
gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [H... 31 4.4
gi|23199987 WD repeat domain 5B [Homo sapiens] 30 7.4
gi|4505293 MYB-related protein B [Homo sapiens] 30 9.7
gi|47132534 STAM binding protein [Homo sapiens] 30 9.7
gi|42519912 STAM binding protein [Homo sapiens] 30 9.7
gi|5453545 STAM binding protein [Homo sapiens] 30 9.7
gi|115511012 coiled-coil domain containing 136 [Homo sapiens] 30 9.7
>gi|40556361 WD repeat domain 93 [Homo sapiens]
Length = 686
Score = 1417 bits (3668), Expect = 0.0
Identities = 686/686 (100%), Positives = 686/686 (100%)
Query: 1 MSFPRGSQTQKIKHPIGTRKGPLEVPPPTEKDWPKDDEQDHVLVDPDEELDSLPQPYRMI 60
MSFPRGSQTQKIKHPIGTRKGPLEVPPPTEKDWPKDDEQDHVLVDPDEELDSLPQPYRMI
Sbjct: 1 MSFPRGSQTQKIKHPIGTRKGPLEVPPPTEKDWPKDDEQDHVLVDPDEELDSLPQPYRMI 60
Query: 61 NKLVNLLFDQSWEIIEERNALREAESSQIQPTVYPPLGEIQLNKMPNCMAVSQDYVFIGG 120
NKLVNLLFDQSWEIIEERNALREAESSQIQPTVYPPLGEIQLNKMPNCMAVSQDYVFIGG
Sbjct: 61 NKLVNLLFDQSWEIIEERNALREAESSQIQPTVYPPLGEIQLNKMPNCMAVSQDYVFIGG 120
Query: 121 AKGFSIYNLYSAKQIYAWEKLKVDVTSIWATDLGNEILIAPVDEMGIIRLFYFYKEGLYL 180
AKGFSIYNLYSAKQIYAWEKLKVDVTSIWATDLGNEILIAPVDEMGIIRLFYFYKEGLYL
Sbjct: 121 AKGFSIYNLYSAKQIYAWEKLKVDVTSIWATDLGNEILIAPVDEMGIIRLFYFYKEGLYL 180
Query: 181 VKAINEVDDTSKQTTCIKMEISQGGDFAAFLLQGAGDIWLDVYKLPKETWLKKLEHPQLT 240
VKAINEVDDTSKQTTCIKMEISQGGDFAAFLLQGAGDIWLDVYKLPKETWLKKLEHPQLT
Sbjct: 181 VKAINEVDDTSKQTTCIKMEISQGGDFAAFLLQGAGDIWLDVYKLPKETWLKKLEHPQLT 240
Query: 241 SNPKKKVRQPQLNSLGPISADPLEMDANVSFKGDIKLSLPVYIMKIKPPKPVTGTTFKSP 300
SNPKKKVRQPQLNSLGPISADPLEMDANVSFKGDIKLSLPVYIMKIKPPKPVTGTTFKSP
Sbjct: 241 SNPKKKVRQPQLNSLGPISADPLEMDANVSFKGDIKLSLPVYIMKIKPPKPVTGTTFKSP 300
Query: 301 LEVFAKIKDCYGLGSGQNHFIKDSQWEQQAEIFNASYKKYLDREWEEEPLSTATFYFLLP 360
LEVFAKIKDCYGLGSGQNHFIKDSQWEQQAEIFNASYKKYLDREWEEEPLSTATFYFLLP
Sbjct: 301 LEVFAKIKDCYGLGSGQNHFIKDSQWEQQAEIFNASYKKYLDREWEEEPLSTATFYFLLP 360
Query: 361 SCLFAMPPEVKGPSGMACVLGIHWTRSHNFFLYSLNRTLKDKADPEGVWPCAAPIAVSQL 420
SCLFAMPPEVKGPSGMACVLGIHWTRSHNFFLYSLNRTLKDKADPEGVWPCAAPIAVSQL
Sbjct: 361 SCLFAMPPEVKGPSGMACVLGIHWTRSHNFFLYSLNRTLKDKADPEGVWPCAAPIAVSQL 420
Query: 421 SCSSSYLVLACEDGVLTLWDLAKGFPLGVAALPQGCFCQSIHFLKYFSVHKGQNMYPEGQ 480
SCSSSYLVLACEDGVLTLWDLAKGFPLGVAALPQGCFCQSIHFLKYFSVHKGQNMYPEGQ
Sbjct: 421 SCSSSYLVLACEDGVLTLWDLAKGFPLGVAALPQGCFCQSIHFLKYFSVHKGQNMYPEGQ 480
Query: 481 VKSQMKCVVLCTDASLHLVEASGTQGPTISVLVERPVKHLDKTICAVAPVPALPGMVLIF 540
VKSQMKCVVLCTDASLHLVEASGTQGPTISVLVERPVKHLDKTICAVAPVPALPGMVLIF
Sbjct: 481 VKSQMKCVVLCTDASLHLVEASGTQGPTISVLVERPVKHLDKTICAVAPVPALPGMVLIF 540
Query: 541 SKNGSVCLMDVAKREIICAFAPPGAFPLEVPWKPVFAVSPDHPCFLLRGDYSHETASTDD 600
SKNGSVCLMDVAKREIICAFAPPGAFPLEVPWKPVFAVSPDHPCFLLRGDYSHETASTDD
Sbjct: 541 SKNGSVCLMDVAKREIICAFAPPGAFPLEVPWKPVFAVSPDHPCFLLRGDYSHETASTDD 600
Query: 601 AGIQYSVFYFNFEACPLLENISKNCTIPQRDLDNMAFPQALPLEKRCERFLQKSYRKLEK 660
AGIQYSVFYFNFEACPLLENISKNCTIPQRDLDNMAFPQALPLEKRCERFLQKSYRKLEK
Sbjct: 601 AGIQYSVFYFNFEACPLLENISKNCTIPQRDLDNMAFPQALPLEKRCERFLQKSYRKLEK 660
Query: 661 NPEKEEEHWARLQRYSLSLQRENFKK 686
NPEKEEEHWARLQRYSLSLQRENFKK
Sbjct: 661 NPEKEEEHWARLQRYSLSLQRENFKK 686
>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
Length = 1670
Score = 36.2 bits (82), Expect = 0.10
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 641 LPLEKRCERFLQKSYRKLEKNPEKEEEHWARLQRYSLSLQRENFKK 686
+ LEKR + +++ R+ E+ +KE+E W R QR LQ + +KK
Sbjct: 376 MELEKRRQALMEQQQREAERKAQKEKEEWERKQR---ELQEQEWKK 418
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 36.2 bits (82), Expect = 0.10
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 641 LPLEKRCERFLQKSYRKLEKNPEKEEEHWARLQRYSLSLQRENFKK 686
+ LEKR + +++ R+ E+ +KE+E W R QR LQ + +KK
Sbjct: 376 MELEKRRQALMEQQQREAERKAQKEKEEWERKQR---ELQEQEWKK 418
>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
Length = 1249
Score = 36.2 bits (82), Expect = 0.10
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 641 LPLEKRCERFLQKSYRKLEKNPEKEEEHWARLQRYSLSLQRENFKK 686
+ LEKR + +++ R+ E+ +KE+E W R QR LQ + +KK
Sbjct: 376 MELEKRRQALMEQQQREAERKAQKEKEEWERKQR---ELQEQEWKK 418
>gi|167003762 hypothetical protein LOC645090 [Homo sapiens]
Length = 633
Score = 32.0 bits (71), Expect = 2.0
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 65 NLLFDQSWE-IIEERNALREAESSQIQPTVYPPLGEIQLNKM--PNCMAVSQDYVFIGGA 121
NL+ D W+ I E +A R + S+IQ PP G I ++ + P M + + V I
Sbjct: 234 NLVMDHCWDSFIYESSAFRFSSPSEIQGIALPPKGNIDISLLFIPQIMKLHKTMVIIEMT 293
Query: 122 KGFSIY 127
K Y
Sbjct: 294 KANGKY 299
>gi|45238854 basic leucine zipper transcription factor, ATF-like 2
[Homo sapiens]
Length = 274
Score = 32.0 bits (71), Expect = 2.0
Identities = 43/151 (28%), Positives = 59/151 (39%), Gaps = 20/151 (13%)
Query: 434 GVLTLWDLAKGFPLGVAALPQ-GCFCQSIHFLKYFSVHKGQNMYPEGQVKSQMKCVVLCT 492
G+L WD A+G LG Q GC Q F S + Q + P G ++ C
Sbjct: 95 GLLGCWDQAEGL-LGPGPQGQHGCREQLELFQTPGSCYPAQPLSP-GPQPHDSPSLLQCP 152
Query: 493 DASLHLVEASGTQGPTISVLVERPVKHLDKTICAVAPVPALPGMVLIFSKNGSVCLMDVA 552
SL L GP +V+ E PV+ ++P P L S GS +
Sbjct: 153 LPSLSL-------GP--AVVAEPPVQ--------LSPSPLLFASHTGSSLQGSSSKLSAL 195
Query: 553 KREIICAFAPPGAFPLEVPWKPVFAVSPDHP 583
+ + APP LE P + SPD+P
Sbjct: 196 QPSLTAQTAPPQPLELEHPTRGKLGSSPDNP 226
>gi|228008407 serine active site containing 1 [Homo sapiens]
Length = 654
Score = 31.2 bits (69), Expect = 3.3
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 49 ELDSLPQPYRMINKLVNLLFDQSWEIIEERNALREAESSQIQPTVYPPLGEIQLNK-MPN 107
E + P+ +IN ++F + + + L E S I+ ++P L +L+K P
Sbjct: 510 EASTKPEMSTVINNTRGIIF---YSVPHHGSRLAEY-SVNIRYLLFPSLEVKELSKDSPA 565
Query: 108 CMAVSQDYVFIGGAKGFSIYNLYSAKQIYAWEKLKVDVTSIWATDLGNEILIAPVD 163
+ D++ K F + N Y +K+ V + + DLG LI PVD
Sbjct: 566 LKTLQDDFLEFAKDKNFQVLNFVETLPTYIGSMIKLHVVPVESADLGIGDLI-PVD 620
>gi|215820619 zinc finger protein 646 [Homo sapiens]
Length = 1832
Score = 31.2 bits (69), Expect = 3.3
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 23 LEVPP-PTEKDWPKDDEQDHVLVDPDEELDSLPQPYRM---INKLVNLLFDQSWEIIEER 78
+E+PP P E + +QDHV +E D P + I + LLF+ + + ER
Sbjct: 535 VELPPDPVEAEAAPHTDQDHVCKHEEEATDITPAADKTAAHICSICGLLFEDAESL--ER 592
Query: 79 NALR----EAESSQIQPTVYPP 96
+ L E E+S+ + T+ PP
Sbjct: 593 HGLTHGAGEKENSRTETTMSPP 614
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 30.8 bits (68), Expect = 4.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 531 PALPGMVLIFSKNGSVCLMDVAKREIICAFAPPGAFPLEVPWKP 574
P +P MV + +GS+ ++ V + +CA P V W P
Sbjct: 159 PTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP 202
>gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [Homo
sapiens]
Length = 532
Score = 30.8 bits (68), Expect = 4.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 400 KDKADPEGVWPCAAPIAVSQLSCSSSYLVLACEDGVLTLWDLAKG 444
+D+ D G+ P VS + +SS V A EDG L +WDL G
Sbjct: 184 EDEEDEPGMQP-----NVSFVRINSSLAVAAYEDGFLNIWDLRTG 223
>gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [Homo
sapiens]
Length = 598
Score = 30.8 bits (68), Expect = 4.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 400 KDKADPEGVWPCAAPIAVSQLSCSSSYLVLACEDGVLTLWDLAKG 444
+D+ D G+ P VS + +SS V A EDG L +WDL G
Sbjct: 250 EDEEDEPGMQP-----NVSFVRINSSLAVAAYEDGFLNIWDLRTG 289
>gi|23199987 WD repeat domain 5B [Homo sapiens]
Length = 330
Score = 30.0 bits (66), Expect = 7.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 414 PIAVSQLSCSSSYLVLACEDGVLTLWDLAKG 444
P++ +CS S +V DG+ +WD A G
Sbjct: 169 PVSAVHFNCSGSLIVSGSYDGLCRIWDAASG 199
>gi|4505293 MYB-related protein B [Homo sapiens]
Length = 700
Score = 29.6 bits (65), Expect = 9.7
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 9 TQKIKHPIGTRKGPLEVPPPTEKDWPKDDEQDHVLVDPDEELDSLPQPYRMINKLVNLLF 68
T K + PIGT + P P E ++PK ++Q+ P+ L PY+ + + NLL
Sbjct: 250 TSKEQEPIGTDLDAVRTPEPLE-EFPKREDQEG--SPPETSL-----PYKWVVEAANLLI 301
Query: 69 DQSWEIIEERNALREAESSQIQPTVYPPLGEIQLNKMPN 107
+ E L E++ P + L + L + P+
Sbjct: 302 PAVGSSLSEALDLIESD-----PDAWCDLSKFDLPEEPS 335
>gi|47132534 STAM binding protein [Homo sapiens]
Length = 424
Score = 29.6 bits (65), Expect = 9.7
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 598 TDDAGIQYSVFYFNFEACPLLENISKN-----CTIPQRD-----LDNMAFPQALPLEKRC 647
+++ I+++ +N +E + K+ IP++ L +AFP+A L+
Sbjct: 51 SEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAEL 110
Query: 648 ERFLQKSYRKLEKNPEKEEEHWARLQRYSLSLQRE 682
+ K Y + + +KE E AR L++E
Sbjct: 111 LKRYTKEYTEYNEEKKKEAEELARNMAIQQELEKE 145
>gi|42519912 STAM binding protein [Homo sapiens]
Length = 424
Score = 29.6 bits (65), Expect = 9.7
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 598 TDDAGIQYSVFYFNFEACPLLENISKN-----CTIPQRD-----LDNMAFPQALPLEKRC 647
+++ I+++ +N +E + K+ IP++ L +AFP+A L+
Sbjct: 51 SEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAEL 110
Query: 648 ERFLQKSYRKLEKNPEKEEEHWARLQRYSLSLQRE 682
+ K Y + + +KE E AR L++E
Sbjct: 111 LKRYTKEYTEYNEEKKKEAEELARNMAIQQELEKE 145
>gi|5453545 STAM binding protein [Homo sapiens]
Length = 424
Score = 29.6 bits (65), Expect = 9.7
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 598 TDDAGIQYSVFYFNFEACPLLENISKN-----CTIPQRD-----LDNMAFPQALPLEKRC 647
+++ I+++ +N +E + K+ IP++ L +AFP+A L+
Sbjct: 51 SEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAEL 110
Query: 648 ERFLQKSYRKLEKNPEKEEEHWARLQRYSLSLQRE 682
+ K Y + + +KE E AR L++E
Sbjct: 111 LKRYTKEYTEYNEEKKKEAEELARNMAIQQELEKE 145
>gi|115511012 coiled-coil domain containing 136 [Homo sapiens]
Length = 1154
Score = 29.6 bits (65), Expect = 9.7
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 35 KDDEQDHVLVDPDEELDSLPQPYRMINKLVNLLFDQSWEIIEERNALREAESSQIQPTVY 94
+D E++ D +EE D D S E EE N LR +ES + PT
Sbjct: 1083 EDKEEEEKEEDSEEEEDDA---------------DSSLESPEENNPLRLSESKKSSPTPN 1127
Query: 95 PPLGEIQL 102
PP+ + L
Sbjct: 1128 PPIFSLPL 1135
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,815,106
Number of Sequences: 37866
Number of extensions: 1463047
Number of successful extensions: 3853
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3843
Number of HSP's gapped (non-prelim): 22
length of query: 686
length of database: 18,247,518
effective HSP length: 109
effective length of query: 577
effective length of database: 14,120,124
effective search space: 8147311548
effective search space used: 8147311548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.