Guide to the Human Genome
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Name: CXorf30 Sequence: fasta or formatted (633aa) NCBI GI: 167003762
Description:

hypothetical protein LOC645090

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         27           2
 C cysteine            2.1         13           1
 D aspartate           4.1         26           1
 E glutamate           7.7         49           2
 F phenylalanine       5.4         34           2
 G glycine             3.9         25           1
 H histidine           2.5         16           1
 I isoleucine         10.1         64           2
 K lysine              7.0         44           2
 L leucine             8.8         56           2
 M methionine          2.5         16           1
 N asparagine          4.4         28           1
 P proline             7.9         50           3
 Q glutamine           3.5         22           1
 R arginine            2.8         18           1
 S serine              6.0         38           2
 T threonine           7.6         48           2
 V valine              5.4         34           2
 W tryptophan          1.3          8           1
 Y tyrosine            2.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC645090 
FAM83H                0.009   FAM83H 
CEP192                0.008   centrosomal protein 192kDa 
WDR93                 0.006   WD repeat domain 93 
WIPF3                 0.006   WAS/WASL interacting protein family, member 3 [Homo...
TMEM194A              0.005   transmembrane protein 194A isoform b 
AMOTL1                0.004   angiomotin like 1 
GPATCH1               0.004   G patch domain containing 1 
ATP8B2                0.004   ATPase, class I, type 8B, member 2 isoform a 
IKZF4                 0.004   zinc finger protein, subfamily 1A, 4 
HYDIN                 0.004   hydrocephalus inducing isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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