Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 40068481
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40068481 SET domain containing 3 isoform a [Homo sapiens]
(594 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40068481 SET domain containing 3 isoform a [Homo sapiens] 1182 0.0
gi|40068483 SET domain containing 3 isoform b [Homo sapiens] 578 e-165
gi|238550107 SET domain containing 6 isoform a [Homo sapiens] 90 5e-18
gi|238550105 SET domain containing 6 isoform b [Homo sapiens] 90 5e-18
gi|8393013 SET domain containing 4 isoform a [Homo sapiens] 71 2e-12
gi|55953063 SET domain containing 4 isoform c [Homo sapiens] 67 6e-11
gi|96975038 coiled-coil domain containing 100 [Homo sapiens] 32 1.7
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 32 2.2
gi|193211614 NAD(P) dependent steroid dehydrogenase-like [Homo s... 32 2.2
gi|8393516 NAD(P) dependent steroid dehydrogenase-like [Homo sap... 32 2.2
gi|122891870 melanoma inhibitory activity family, member 3 [Homo... 31 2.8
gi|222418639 melanoma antigen family B, 2 [Homo sapiens] 31 3.7
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap... 31 3.7
gi|148491070 CTP synthase [Homo sapiens] 30 4.8
gi|20162572 necdin-like 2 [Homo sapiens] 30 4.8
gi|239753487 PREDICTED: hypothetical protein [Homo sapiens] 30 6.3
gi|239748063 PREDICTED: hypothetical protein [Homo sapiens] 30 6.3
gi|239741956 PREDICTED: hypothetical protein XP_002342400 [Homo ... 30 6.3
gi|47419936 SFRS protein kinase 1 [Homo sapiens] 30 6.3
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 30 6.3
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 30 6.3
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 30 6.3
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 30 6.3
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 30 6.3
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 30 6.3
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 30 6.3
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 30 6.3
gi|21735548 centrosomal protein 2 [Homo sapiens] 30 8.2
gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens] 30 8.2
gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens] 30 8.2
>gi|40068481 SET domain containing 3 isoform a [Homo sapiens]
Length = 594
Score = 1182 bits (3058), Expect = 0.0
Identities = 594/594 (100%), Positives = 594/594 (100%)
Query: 1 MGKKSRVKTQKSGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWEEYVQIRTLVEKI 60
MGKKSRVKTQKSGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWEEYVQIRTLVEKI
Sbjct: 1 MGKKSRVKTQKSGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWEEYVQIRTLVEKI 60
Query: 61 RKKQKGLSVTFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELF 120
RKKQKGLSVTFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELF
Sbjct: 61 RKKQKGLSVTFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELF 120
Query: 121 LWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNIALAFHLLCERASPNSFWQPYIQTLP 180
LWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNIALAFHLLCERASPNSFWQPYIQTLP
Sbjct: 121 LWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNIALAFHLLCERASPNSFWQPYIQTLP 180
Query: 181 SEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKDSFT 240
SEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKDSFT
Sbjct: 181 SEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKDSFT 240
Query: 241 YEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVAL 300
YEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVAL
Sbjct: 241 YEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVAL 300
Query: 301 QDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARA 360
QDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARA
Sbjct: 301 QDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARA 360
Query: 361 GIPTSSVFALHFTEPPISAQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSW 420
GIPTSSVFALHFTEPPISAQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSW
Sbjct: 361 GIPTSSVFALHFTEPPISAQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSW 420
Query: 421 DNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGEKEILEKAVK 480
DNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGEKEILEKAVK
Sbjct: 421 DNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGEKEILEKAVK 480
Query: 481 SAAVNREYYRQQMEEKAPLPKYEESNLGLLESSVGDSRLPLVLRNLEEEAGVQDALNIRE 540
SAAVNREYYRQQMEEKAPLPKYEESNLGLLESSVGDSRLPLVLRNLEEEAGVQDALNIRE
Sbjct: 481 SAAVNREYYRQQMEEKAPLPKYEESNLGLLESSVGDSRLPLVLRNLEEEAGVQDALNIRE 540
Query: 541 AISKAKATENGLVNGENSIPNGTRSENESLNQESKRAVEDAKGSSSDSTAGVKE 594
AISKAKATENGLVNGENSIPNGTRSENESLNQESKRAVEDAKGSSSDSTAGVKE
Sbjct: 541 AISKAKATENGLVNGENSIPNGTRSENESLNQESKRAVEDAKGSSSDSTAGVKE 594
>gi|40068483 SET domain containing 3 isoform b [Homo sapiens]
Length = 296
Score = 578 bits (1491), Expect = e-165
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MGKKSRVKTQKSGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWEEYVQIRTLVEKI 60
MGKKSRVKTQKSGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWEEYVQIRTLVEKI
Sbjct: 1 MGKKSRVKTQKSGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWEEYVQIRTLVEKI 60
Query: 61 RKKQKGLSVTFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELF 120
RKKQKGLSVTFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELF
Sbjct: 61 RKKQKGLSVTFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELF 120
Query: 121 LWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNIALAFHLLCERASPNSFWQPYIQTLP 180
LWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNIALAFHLLCERASPNSFWQPYIQTLP
Sbjct: 121 LWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNIALAFHLLCERASPNSFWQPYIQTLP 180
Query: 181 SEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKDSFT 240
SEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKDSFT
Sbjct: 181 SEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKDSFT 240
Query: 241 YEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGL 283
YEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGL
Sbjct: 241 YEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGL 283
>gi|238550107 SET domain containing 6 isoform a [Homo sapiens]
Length = 473
Score = 90.1 bits (222), Expect = 5e-18
Identities = 107/410 (26%), Positives = 175/410 (42%), Gaps = 47/410 (11%)
Query: 105 GFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRI-LQAM-GNIALAFHLL 162
G+G+ A ++A EL VPR L++ + +G L ++R+ LQ+ G + L LL
Sbjct: 74 GYGMVARESVQAGELLFVVPRAALLSQHTCS---IGGLLERERVALQSQSGWVPLLLALL 130
Query: 163 CERASPNSFWQPYIQTLP--SEYDTPLYFEEDEVR-YLQSTQAIHDVFSQYKNTARQY-A 218
E +P S W+PY P + P+++ E+E R LQ T V N +Y +
Sbjct: 131 HELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQS 190
Query: 219 YFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRV----TLALIPLW 274
++ HP L ++ + E Y V+ VM Q P E+ + ++P
Sbjct: 191 IVLPFMEAHPDLFSLRVR---SLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAA 247
Query: 275 DMCNHTNGLITTGYNLE-DDRC-ECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFF--FD 330
D+ NH L NLE C VA Q G +I+ YG +N + + GF +
Sbjct: 248 DILNH---LANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEPYP 304
Query: 331 NNSHDRVKIKLGVSKSDRLYAMKAE------------VLARAGIPTSSVFALHFTEPPIS 378
+N+ D I++ + L K E + + F + E
Sbjct: 305 DNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEGAFVIGREEVLTE 364
Query: 379 AQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKL---W-TFLEDRA 434
+L L+V CM EE +E D D E ++ N KL W L++
Sbjct: 365 EELTTTLKVLCMPAEEFRELKDQDGGGDD----KREEGSLTITNIPKLKASWRQLLQNSV 420
Query: 435 SLLLKTYKTTIEEDKSVLKNHD----LSVRAKMAIKLRLGEKEILEKAVK 480
L L+TY T ++ D+ +L N + LS R + A+++R G+K IL + ++
Sbjct: 421 LLTLQTYATDLKTDQGLLSNKEVYAKLSWREQQALQVRYGQKMILHQLLE 470
>gi|238550105 SET domain containing 6 isoform b [Homo sapiens]
Length = 449
Score = 90.1 bits (222), Expect = 5e-18
Identities = 107/410 (26%), Positives = 175/410 (42%), Gaps = 47/410 (11%)
Query: 105 GFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRI-LQAM-GNIALAFHLL 162
G+G+ A ++A EL VPR L++ + +G L ++R+ LQ+ G + L LL
Sbjct: 50 GYGMVARESVQAGELLFVVPRAALLSQHTCS---IGGLLERERVALQSQSGWVPLLLALL 106
Query: 163 CERASPNSFWQPYIQTLP--SEYDTPLYFEEDEVR-YLQSTQAIHDVFSQYKNTARQY-A 218
E +P S W+PY P + P+++ E+E R LQ T V N +Y +
Sbjct: 107 HELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQS 166
Query: 219 YFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRV----TLALIPLW 274
++ HP L ++ + E Y V+ VM Q P E+ + ++P
Sbjct: 167 IVLPFMEAHPDLFSLRVR---SLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAA 223
Query: 275 DMCNHTNGLITTGYNLE-DDRC-ECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFF--FD 330
D+ NH L NLE C VA Q G +I+ YG +N + + GF +
Sbjct: 224 DILNH---LANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEPYP 280
Query: 331 NNSHDRVKIKLGVSKSDRLYAMKAE------------VLARAGIPTSSVFALHFTEPPIS 378
+N+ D I++ + L K E + + F + E
Sbjct: 281 DNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEGAFVIGREEVLTE 340
Query: 379 AQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKL---W-TFLEDRA 434
+L L+V CM EE +E D D E ++ N KL W L++
Sbjct: 341 EELTTTLKVLCMPAEEFRELKDQDGGGDD----KREEGSLTITNIPKLKASWRQLLQNSV 396
Query: 435 SLLLKTYKTTIEEDKSVLKNHD----LSVRAKMAIKLRLGEKEILEKAVK 480
L L+TY T ++ D+ +L N + LS R + A+++R G+K IL + ++
Sbjct: 397 LLTLQTYATDLKTDQGLLSNKEVYAKLSWREQQALQVRYGQKMILHQLLE 446
>gi|8393013 SET domain containing 4 isoform a [Homo sapiens]
Length = 440
Score = 71.2 bits (173), Expect = 2e-12
Identities = 96/431 (22%), Positives = 175/431 (40%), Gaps = 36/431 (8%)
Query: 59 KIRKKQKGLSVTFDGKREDY---FPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIK 115
+IR+++ S G E + F +L KW F G GL + ++
Sbjct: 10 RIRRRKLCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGRGLMSQTSLQ 69
Query: 116 AEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNIALAFHLLCER-ASPNSFWQP 174
++ + +P L+T ++ S LG ++ + + +AL L+ E+ A S W+P
Sbjct: 70 EGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSP-LLALCTFLVSEKHAGHRSLWKP 128
Query: 175 YIQTLPSEYDTPLYFEEDEVRYL-QSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKL 233
Y++ LP Y P+ E + V L +S +A + Q + +A +
Sbjct: 129 YLEILPKAYTCPVCLEPEVVNLLPKSLKAKAE--EQRAHVQEFFASSRDFFSSLQPLFAE 186
Query: 234 PLKDSFTYEDYRWAVSSVMT-----RQNQIPTEDGSRVTLALIPLWDMCNHTNGL-ITTG 287
+ F+Y WA +V T R Q T AL P D+ NH+ + +
Sbjct: 187 AVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDLLNHSPHVQVKAA 246
Query: 288 YNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGV---- 343
+N E E +R E+++I YG N + GF +N H V + +
Sbjct: 247 FNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSREILVKY 306
Query: 344 -SKSDRLYAMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFLRVFCMTEEEL---KEHL 399
+D+ K +L G + L F S +LL L++ C+ E+ K+ L
Sbjct: 307 LPSTDKQMDKKISILKDHGY----IENLTFGWDGPSWRLLTALKLLCLEAEKFTCWKKVL 362
Query: 400 LGDSAIDRIFTLGNSEFPVSWDNEVKL-WTFLEDRASLLLKTYKTTIEEDKSVLKNHDLS 458
LG+ + ++ S D K+ + F+E+ ++L K + ++++K L N
Sbjct: 363 LGE-------VISDTNEKTSLDIAQKICYYFIEETNAVLQKV--SHMKDEKEALINQLTL 413
Query: 459 VRAKMAIKLRL 469
V + +L++
Sbjct: 414 VESLWTEELKI 424
>gi|55953063 SET domain containing 4 isoform c [Homo sapiens]
Length = 307
Score = 66.6 bits (161), Expect = 6e-11
Identities = 69/295 (23%), Positives = 118/295 (40%), Gaps = 14/295 (4%)
Query: 59 KIRKKQKGLSVTFDGKREDY---FPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIK 115
+IR+++ S G E + F +L KW F G GL + ++
Sbjct: 10 RIRRRKLCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGRGLMSQTSLQ 69
Query: 116 AEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNIALAFHLLCER-ASPNSFWQP 174
++ + +P L+T ++ S LG ++ + + +AL L+ E+ A S W+P
Sbjct: 70 EGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSP-LLALCTFLVSEKHAGHRSLWKP 128
Query: 175 YIQTLPSEYDTPLYFEEDEVRYL-QSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKL 233
Y++ LP Y P+ E + V L +S +A + Q + +A +
Sbjct: 129 YLEILPKAYTCPVCLEPEVVNLLPKSLKAKAE--EQRAHVQEFFASSRDFFSSLQPLFAE 186
Query: 234 PLKDSFTYEDYRWAVSSVMT-----RQNQIPTEDGSRVTLALIPLWDMCNHTNGL-ITTG 287
+ F+Y WA +V T R Q T AL P D+ NH+ + +
Sbjct: 187 AVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDLLNHSPHVQVKAA 246
Query: 288 YNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLG 342
+N E E +R E+++I YG N + GF +N H V + G
Sbjct: 247 FNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSRG 301
>gi|96975038 coiled-coil domain containing 100 [Homo sapiens]
Length = 986
Score = 32.0 bits (71), Expect = 1.7
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 453 KNHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQ----MEEKAPLPKYE-ESNL 507
+N+ +R + I L EK LE+ ++SA ++ +Y+QQ ++E A L + E ES +
Sbjct: 808 QNNKPEIRLQSEINLLTLEKVELERKLESATKSKLHYKQQWGRALKELARLKQREQESQM 867
Query: 508 GLLESSVGD-SRLPLVLRNLEEEAGV----QDALNIREAISKAKATE-------NGLVNG 555
L+ + ++ L EE+ V Q+ L+IR +++ + E + +G
Sbjct: 868 ARLKKQQEELEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQEQKQYQDSTEIASG 927
Query: 556 ENSIPNGTRSENESLNQESKRAVED 580
+ P+G+ E E L+ R +E+
Sbjct: 928 KKDGPHGSVLE-EGLDDYLTRLIEE 951
>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
Length = 3957
Score = 31.6 bits (70), Expect = 2.2
Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 446 EEDKSVLKNHDLSVRAKMAIKLRLGEKE-ILEKAVKSAAVNREYYRQQMEEK-------- 496
+E +S K H S+ K ++ +L EK+ E+ ++++A E + EE
Sbjct: 1685 DETQSTQKQHKPSLGIKKPVRRKLKEKQKQKEEGLQASAEKAELKKGSSEESLGEDPGLA 1744
Query: 497 -APLPKYEESNLGLLESSVGD--SRLPLVLRNLEEEAGVQDALNIREAISKAKATENGLV 553
PLP + ++ + E+ +G ++ + + +E+E + L IR V
Sbjct: 1745 PEPLPTVKATSPLIEETPIGSIKDKVKALQKRVEDEQKGRSKLPIR-------------V 1791
Query: 554 NGENSIPNGTRSENESLNQESKRAVEDAKGSSSDST 589
G+ +P T S ++ A GS S T
Sbjct: 1792 KGKEDVPKKTTHRPHPAASPSLKSERHAPGSPSPKT 1827
>gi|193211614 NAD(P) dependent steroid dehydrogenase-like [Homo
sapiens]
Length = 373
Score = 31.6 bits (70), Expect = 2.2
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 388 FCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFL 430
F E + H+L + R TLG F ++ D + WTFL
Sbjct: 237 FTFVENVVHGHILAAEQLSRDSTLGGKAFHITNDEPIPFWTFL 279
>gi|8393516 NAD(P) dependent steroid dehydrogenase-like [Homo
sapiens]
Length = 373
Score = 31.6 bits (70), Expect = 2.2
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 388 FCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFL 430
F E + H+L + R TLG F ++ D + WTFL
Sbjct: 237 FTFVENVVHGHILAAEQLSRDSTLGGKAFHITNDEPIPFWTFL 279
>gi|122891870 melanoma inhibitory activity family, member 3 [Homo
sapiens]
Length = 1907
Score = 31.2 bits (69), Expect = 2.8
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 21/159 (13%)
Query: 425 KLWTFLEDRASLL--LKTYKTTIEEDKSVLKN--------HDLSVRAKMAIKLRLGEKEI 474
KL T +++ L+ L Y+ I+E K ++ D +++ K IK +EI
Sbjct: 1219 KLKTIMKENTELVQKLSNYEQKIKESKKHVQETRKQNMILSDEAIKYKDKIKTLEKNQEI 1278
Query: 475 LEKAVKSAAVNREYYRQQMEEKAPLPKYEESNLGLLESSVGDSRLPLVLRNLEEEAGVQD 534
L+ K+ V E R+Q + L + ++ L+ ++ N E + VQ
Sbjct: 1279 LDDTAKNLRVMLESEREQNVKNQDLISENKKSIEKLKD--------VISMNASEFSEVQI 1330
Query: 535 ALNIREAISKAKATENGLVNGENSIPNGTRSENESLNQE 573
ALN + + +E V EN+ + + E L QE
Sbjct: 1331 ALNEAKLSEEKVKSECHRVQEENA---RLKKKKEQLQQE 1366
>gi|222418639 melanoma antigen family B, 2 [Homo sapiens]
Length = 319
Score = 30.8 bits (68), Expect = 3.7
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 7 VKTQKSGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWEEYVQIRTLVEKIRKK-QK 65
V + KS GA + K + + K S P K VQ KI+K K
Sbjct: 76 VSSTKSKKGAKSHQGEKNASSSQASTSTKSPSEDPLTRKSGS-LVQFLLYKYKIKKSVTK 134
Query: 66 GLSVTFDGKR-EDYFPDLMKWASENGASVEGFEM--VNFKEEGFGLRATRDIKAEELFL- 121
G + GKR ++FP+++K ASE + V G E+ VN + D+ EE L
Sbjct: 135 GEMLKIVGKRFREHFPEILKKASEGLSVVFGLELNKVNPNGHTYTFIDKVDLTDEESLLS 194
Query: 122 ---WVPRKLLM 129
+ RKLLM
Sbjct: 195 SWDFPRRKLLM 205
>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo
sapiens]
Length = 1555
Score = 30.8 bits (68), Expect = 3.7
Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 439 KTYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQMEEKAP 498
KT KT E + K ++K K+ E + L+ KS + + + ++
Sbjct: 328 KTSKTIPSEKLNSSKQE----KSKSGEKITKKELDQLDSKSKSKSKSPSPLKNKLSHTKD 383
Query: 499 LPKYEESNLGLLESSVGDSRLPLVLRNLEE--EAGVQDALNIREAISK---AKATENGLV 553
L E ++ L + + D RL L++ + + V++ E K K++E+ L
Sbjct: 384 LKNQESESMRLSDMNKRDPRLKKHLQDKTDGKDDDVKEKRKTAEKKDKDEHMKSSEHRLA 443
Query: 554 NGENSIPNGTRSENESLNQESKR 576
N I NG + +++ +ES++
Sbjct: 444 GSRNKIINGIVQKQDTITEESEK 466
>gi|148491070 CTP synthase [Homo sapiens]
Length = 591
Score = 30.4 bits (67), Expect = 4.8
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 261 EDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAE 320
E+ R + P+W C GL G ++E +R E V L+D F G + + E
Sbjct: 475 EERHRHRFEVNPVWKKCLEEQGLKFVGQDVEGERMEIVELEDHP------FFVGVQYHPE 528
Query: 321 FV 322
F+
Sbjct: 529 FL 530
>gi|20162572 necdin-like 2 [Homo sapiens]
Length = 304
Score = 30.4 bits (67), Expect = 4.8
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 37 SSPAPGPGKEWEEYVQIRTLVE--------KIRKKQKGLSVTFDGKREDYFPDLMKWASE 88
++PA GP + + +++ LV+ KI K+ + G +D FPDL K A+E
Sbjct: 73 AAPAVGPRSQKQLELKVSELVQFLLIKDQKKIPIKRADILKHVIGDYKDIFPDLFKRAAE 132
Query: 89 NGASVEGFEMVNFK 102
V G+++V +
Sbjct: 133 RLQYVFGYKLVELE 146
>gi|239753487 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 30.0 bits (66), Expect = 6.3
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 12 SGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWE-EYVQIRTLVEKIRKKQKGLSVT 70
S T +++ +S K+ + E + + P PG W ++ R Q+ T
Sbjct: 35 STTNSSSVISEKKPADSAEEQEMQPGTRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTT 94
Query: 71 FDGK----REDYFPDLMKWASE 88
F + R Y P L KW SE
Sbjct: 95 FTAQNHPARGSYHPCLTKWESE 116
>gi|239748063 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 30.0 bits (66), Expect = 6.3
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 12 SGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWE-EYVQIRTLVEKIRKKQKGLSVT 70
S T +++ +S K+ + E + + P PG W ++ R Q+ T
Sbjct: 35 STTNSSSVISEKKPADSAEEQEMQPGTRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTT 94
Query: 71 FDGK----REDYFPDLMKWASE 88
F + R Y P L KW SE
Sbjct: 95 FTAQNHPARGSYHPCLTKWESE 116
>gi|239741956 PREDICTED: hypothetical protein XP_002342400 [Homo
sapiens]
Length = 163
Score = 30.0 bits (66), Expect = 6.3
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 12 SGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWE-EYVQIRTLVEKIRKKQKGLSVT 70
S T +++ +S K+ + E + + P PG W ++ R Q+ T
Sbjct: 35 STTNSSSVISEKKPADSAEEQEMQPGTRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTT 94
Query: 71 FDGK----REDYFPDLMKWASE 88
F + R Y P L KW SE
Sbjct: 95 FTAQNHPARGSYHPCLTKWESE 116
>gi|47419936 SFRS protein kinase 1 [Homo sapiens]
Length = 655
Score = 30.0 bits (66), Expect = 6.3
Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 10/145 (6%)
Query: 453 KNHDLSVRAKMAIKLRLGEKEI--LEKAVKSAAVNREYYRQQMEEKAPL-------PKYE 503
KN ++ K + L EK + +E+ K + ++ +Q E ++P+ P +
Sbjct: 265 KNKKKKLKKKQKRQAELLEKRMQEIEEMEKESGPGQKRPNKQEESESPVERPLKENPPNK 324
Query: 504 ESNLGLLESSVGDSRLPLVLRNLEEEAGVQDALNIREAISKAKATENGLVNGENSIPNGT 563
+ L ESS L+ R+ E A + + E I+ + + N + + + N
Sbjct: 325 MTQEKLEESSTIGQDQTLMERDTEGGAAEINCNGVIEVINYTQNSNNETLRHKEDLHNAN 384
Query: 564 RSENESLNQESKRAVEDAKGSSSDS 588
+ ++LNQES + G SS S
Sbjct: 385 DCDVQNLNQESS-FLSSQNGDSSTS 408
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 30.0 bits (66), Expect = 6.3
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 458 SVRAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQMEEKAPLPKYE-ESNLGLLESSVGD 516
+ R K ++ L EKE + ++ A + + R+++EE+A K + E L L + D
Sbjct: 1845 ATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKA-SD 1903
Query: 517 SRLP----LVLRNLEEEAGV-QDALNIREAISKAKATENGL--------VNGENSIPNGT 563
S L LV L + V ++ L ++ + KA A + L N E+++ +
Sbjct: 1904 SELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKE 1963
Query: 564 RSENESLNQESKRAVEDAK 582
++E E+ Q A E+ +
Sbjct: 1964 QAELEAARQRQLAAEEERR 1982
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 30.0 bits (66), Expect = 6.3
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 458 SVRAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQMEEKAPLPKYE-ESNLGLLESSVGD 516
+ R K ++ L EKE + ++ A + + R+++EE+A K + E L L + D
Sbjct: 1849 ATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKA-SD 1907
Query: 517 SRLP----LVLRNLEEEAGV-QDALNIREAISKAKATENGL--------VNGENSIPNGT 563
S L LV L + V ++ L ++ + KA A + L N E+++ +
Sbjct: 1908 SELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKE 1967
Query: 564 RSENESLNQESKRAVEDAK 582
++E E+ Q A E+ +
Sbjct: 1968 QAELEAARQRQLAAEEERR 1986
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 30.0 bits (66), Expect = 6.3
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 458 SVRAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQMEEKAPLPKYE-ESNLGLLESSVGD 516
+ R K ++ L EKE + ++ A + + R+++EE+A K + E L L + D
Sbjct: 1845 ATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKA-SD 1903
Query: 517 SRLP----LVLRNLEEEAGV-QDALNIREAISKAKATENGL--------VNGENSIPNGT 563
S L LV L + V ++ L ++ + KA A + L N E+++ +
Sbjct: 1904 SELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKE 1963
Query: 564 RSENESLNQESKRAVEDAK 582
++E E+ Q A E+ +
Sbjct: 1964 QAELEAARQRQLAAEEERR 1982
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 30.0 bits (66), Expect = 6.3
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 458 SVRAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQMEEKAPLPKYE-ESNLGLLESSVGD 516
+ R K ++ L EKE + ++ A + + R+++EE+A K + E L L + D
Sbjct: 1813 ATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKA-SD 1871
Query: 517 SRLP----LVLRNLEEEAGV-QDALNIREAISKAKATENGL--------VNGENSIPNGT 563
S L LV L + V ++ L ++ + KA A + L N E+++ +
Sbjct: 1872 SELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKE 1931
Query: 564 RSENESLNQESKRAVEDAK 582
++E E+ Q A E+ +
Sbjct: 1932 QAELEAARQRQLAAEEERR 1950
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 30.0 bits (66), Expect = 6.3
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 458 SVRAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQMEEKAPLPKYE-ESNLGLLESSVGD 516
+ R K ++ L EKE + ++ A + + R+++EE+A K + E L L + D
Sbjct: 1982 ATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKA-SD 2040
Query: 517 SRLP----LVLRNLEEEAGV-QDALNIREAISKAKATENGL--------VNGENSIPNGT 563
S L LV L + V ++ L ++ + KA A + L N E+++ +
Sbjct: 2041 SELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKE 2100
Query: 564 RSENESLNQESKRAVEDAK 582
++E E+ Q A E+ +
Sbjct: 2101 QAELEAARQRQLAAEEERR 2119
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 30.0 bits (66), Expect = 6.3
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 458 SVRAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQMEEKAPLPKYE-ESNLGLLESSVGD 516
+ R K ++ L EKE + ++ A + + R+++EE+A K + E L L + D
Sbjct: 1823 ATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKA-SD 1881
Query: 517 SRLP----LVLRNLEEEAGV-QDALNIREAISKAKATENGL--------VNGENSIPNGT 563
S L LV L + V ++ L ++ + KA A + L N E+++ +
Sbjct: 1882 SELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKE 1941
Query: 564 RSENESLNQESKRAVEDAK 582
++E E+ Q A E+ +
Sbjct: 1942 QAELEAARQRQLAAEEERR 1960
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 30.0 bits (66), Expect = 6.3
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 458 SVRAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQMEEKAPLPKYE-ESNLGLLESSVGD 516
+ R K ++ L EKE + ++ A + + R+++EE+A K + E L L + D
Sbjct: 1831 ATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKA-SD 1889
Query: 517 SRLP----LVLRNLEEEAGV-QDALNIREAISKAKATENGL--------VNGENSIPNGT 563
S L LV L + V ++ L ++ + KA A + L N E+++ +
Sbjct: 1890 SELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKE 1949
Query: 564 RSENESLNQESKRAVEDAK 582
++E E+ Q A E+ +
Sbjct: 1950 QAELEAARQRQLAAEEERR 1968
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 30.0 bits (66), Expect = 6.3
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 458 SVRAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQMEEKAPLPKYE-ESNLGLLESSVGD 516
+ R K ++ L EKE + ++ A + + R+++EE+A K + E L L + D
Sbjct: 1872 ATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKA-SD 1930
Query: 517 SRLP----LVLRNLEEEAGV-QDALNIREAISKAKATENGL--------VNGENSIPNGT 563
S L LV L + V ++ L ++ + KA A + L N E+++ +
Sbjct: 1931 SELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKE 1990
Query: 564 RSENESLNQESKRAVEDAK 582
++E E+ Q A E+ +
Sbjct: 1991 QAELEAARQRQLAAEEERR 2009
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 29.6 bits (65), Expect = 8.2
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 460 RAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQMEEKAPLPKYEESNLGLLESSVGDSRL 519
RA++ GE+E+L+ A ++ E+ + + E + + S G+LE + +R
Sbjct: 1331 RAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEA----RAQASAAGILEEDLRTARS 1386
Query: 520 PLVLRNLEEEAGVQDALNIRE----AISKAKATENGL 552
L L+N E E+ + A ++E +++ KA + L
Sbjct: 1387 ALKLKNEEVESERERAQALQEQGELKVAQGKALQENL 1423
>gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]
Length = 770
Score = 29.6 bits (65), Expect = 8.2
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 514 VGDSRLPLVLRNLEEEAGVQDALNIREAISKAKATENGLVNGENSIPNGTRSENESLNQE 573
+GD R P+ +EE + D +I ++ K + E+ +S +G+ SE E +E
Sbjct: 233 LGDGRKPVKEEKMEERDLLSDLQDISDSERKTSSAES------SSAESGSGSEEEEEEEE 286
Query: 574 SKRAVEDAKGSSSDSTAGVKE 594
E+ +GS+S+ + +E
Sbjct: 287 E----EEEEGSTSEESEEEEE 303
>gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens]
Length = 780
Score = 29.6 bits (65), Expect = 8.2
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 514 VGDSRLPLVLRNLEEEAGVQDALNIREAISKAKATENGLVNGENSIPNGTRSENESLNQE 573
+GD R P+ +EE + D +I ++ K + E+ +S +G+ SE E +E
Sbjct: 243 LGDGRKPVKEEKMEERDLLSDLQDISDSERKTSSAES------SSAESGSGSEEEEEEEE 296
Query: 574 SKRAVEDAKGSSSDSTAGVKE 594
E+ +GS+S+ + +E
Sbjct: 297 E----EEEEGSTSEESEEEEE 313
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,459,628
Number of Sequences: 37866
Number of extensions: 942627
Number of successful extensions: 2890
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2857
Number of HSP's gapped (non-prelim): 61
length of query: 594
length of database: 18,247,518
effective HSP length: 108
effective length of query: 486
effective length of database: 14,157,990
effective search space: 6880783140
effective search space used: 6880783140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.