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Search of human proteins with 39995061
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39995061 caspase 2 isoform 3 [Homo sapiens]
(108 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39995061 caspase 2 isoform 3 [Homo sapiens] 217 2e-57
gi|39995059 caspase 2 isoform 1 preproprotein [Homo sapiens] 212 5e-56
gi|4503031 CASP2 and RIPK1 domain containing adaptor with death ... 44 2e-05
gi|7662404 caspase recruitment domain family, member 8 [Homo sap... 31 0.19
gi|194578923 sperm associated antigen 9 isoform 1 [Homo sapiens] 30 0.32
gi|27436920 sperm associated antigen 9 isoform 3 [Homo sapiens] 30 0.32
gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens] 27 2.7
gi|4504165 gelsolin isoform a precursor [Homo sapiens] 27 4.6
gi|38044288 gelsolin isoform b [Homo sapiens] 27 4.6
gi|189083782 gelsolin isoform c [Homo sapiens] 27 4.6
gi|189083780 gelsolin isoform c [Homo sapiens] 27 4.6
gi|189083778 gelsolin isoform b [Homo sapiens] 27 4.6
gi|189083776 gelsolin isoform b [Homo sapiens] 27 4.6
gi|189083774 gelsolin isoform b [Homo sapiens] 27 4.6
gi|189083772 gelsolin isoform b [Homo sapiens] 27 4.6
gi|162951877 scinderin isoform 1 [Homo sapiens] 27 4.6
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 26 6.0
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 26 6.0
gi|18874090 WD repeat domain 48 [Homo sapiens] 26 6.0
gi|216547715 basic helix-loop-helix domain containing, class B, ... 26 6.0
gi|216547682 basic helix-loop-helix domain containing, class B, ... 26 6.0
gi|216547672 basic helix-loop-helix domain containing, class B, ... 26 6.0
gi|216547663 basic helix-loop-helix domain containing, class B, ... 26 6.0
gi|216547655 basic helix-loop-helix domain containing, class B, ... 26 6.0
gi|216547646 basic helix-loop-helix domain containing, class B, ... 26 6.0
gi|216547639 basic helix-loop-helix domain containing, class B, ... 26 6.0
gi|39930463 basic helix-loop-helix domain containing, class B, 9... 26 6.0
gi|21070980 peptidylglycine alpha-amidating monooxygenase isofor... 26 6.0
gi|111074532 OGT(O-Glc-NAc transferase)-interacting protein 106 ... 26 7.9
gi|45359873 OGT(O-Glc-NAc transferase)-interacting protein 106 K... 26 7.9
>gi|39995061 caspase 2 isoform 3 [Homo sapiens]
Length = 108
Score = 217 bits (552), Expect = 2e-57
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MAAPSAGSWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHL 60
MAAPSAGSWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHL
Sbjct: 1 MAAPSAGSWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHL 60
Query: 61 LEKDIITLEMRELIQAKVGSFSQNVELLNLLPKRGPQAFDAFCEALHS 108
LEKDIITLEMRELIQAKVGSFSQNVELLNLLPKRGPQAFDAFCEALHS
Sbjct: 61 LEKDIITLEMRELIQAKVGSFSQNVELLNLLPKRGPQAFDAFCEALHS 108
>gi|39995059 caspase 2 isoform 1 preproprotein [Homo sapiens]
Length = 452
Score = 212 bits (540), Expect = 5e-56
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MAAPSAGSWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHL 60
MAAPSAGSWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHL
Sbjct: 1 MAAPSAGSWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHL 60
Query: 61 LEKDIITLEMRELIQAKVGSFSQNVELLNLLPKRGPQAFDAFCEAL 106
LEKDIITLEMRELIQAKVGSFSQNVELLNLLPKRGPQAFDAFCEAL
Sbjct: 61 LEKDIITLEMRELIQAKVGSFSQNVELLNLLPKRGPQAFDAFCEAL 106
>gi|4503031 CASP2 and RIPK1 domain containing adaptor with death
domain [Homo sapiens]
Length = 199
Score = 44.3 bits (103), Expect = 2e-05
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 32 MHPHHQETLKKNRVVLAKQLLLSEL-LEHLLEKDIITLEMRELIQAKVGSFSQNVELLNL 90
M ++ L+ R+ L ++L+ L L++L ++ I+T + I A+ + + LL++
Sbjct: 1 MEARDKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEINAQTTGLRKTMLLLDI 60
Query: 91 LPKRGPQAFDAFCEAL 106
LP RGP+AFD F ++L
Sbjct: 61 LPSRGPKAFDTFLDSL 76
>gi|7662404 caspase recruitment domain family, member 8 [Homo
sapiens]
Length = 431
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/66 (24%), Positives = 37/66 (56%)
Query: 41 KKNRVVLAKQLLLSELLEHLLEKDIITLEMRELIQAKVGSFSQNVELLNLLPKRGPQAFD 100
+ +R + A+ L +L+ L + +++T +EL++ + S+N LL+++ K+G A D
Sbjct: 350 ENHRQLQARMGDLKGVLDDLQDNEVLTENEKELVEQEKTRQSKNEALLSMVEKKGDLALD 409
Query: 101 AFCEAL 106
++
Sbjct: 410 VLFRSI 415
>gi|194578923 sperm associated antigen 9 isoform 1 [Homo sapiens]
Length = 1321
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 42 KNRVVLAKQLLLSELLEHLLEKDIITLEMRELIQAKVGSFSQNVELLNLLPKRGPQAFDA 101
KN + + K L++++ E EKD++ E+ + QAK+ +N EL L K +A DA
Sbjct: 424 KNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRKARAEAEDA 483
>gi|27436920 sperm associated antigen 9 isoform 3 [Homo sapiens]
Length = 1307
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 42 KNRVVLAKQLLLSELLEHLLEKDIITLEMRELIQAKVGSFSQNVELLNLLPKRGPQAFDA 101
KN + + K L++++ E EKD++ E+ + QAK+ +N EL L K +A DA
Sbjct: 410 KNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRKARAEAEDA 469
>gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens]
Length = 700
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 48 AKQLLLSELLEHLLEKDIITLEMRELIQAKVGSFSQNVELLNLLPKRG 95
A+ LLL+ L EH +E D+ ++K+G LL +L KRG
Sbjct: 503 AESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRG 550
>gi|4504165 gelsolin isoform a precursor [Homo sapiens]
Length = 782
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 8 SWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRV 45
SW +F + + D G I CG + + E LK +V
Sbjct: 206 SWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQV 243
>gi|38044288 gelsolin isoform b [Homo sapiens]
Length = 731
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 8 SWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRV 45
SW +F + + D G I CG + + E LK +V
Sbjct: 155 SWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQV 192
>gi|189083782 gelsolin isoform c [Homo sapiens]
Length = 742
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 8 SWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRV 45
SW +F + + D G I CG + + E LK +V
Sbjct: 166 SWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQV 203
>gi|189083780 gelsolin isoform c [Homo sapiens]
Length = 742
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 8 SWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRV 45
SW +F + + D G I CG + + E LK +V
Sbjct: 166 SWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQV 203
>gi|189083778 gelsolin isoform b [Homo sapiens]
Length = 731
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 8 SWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRV 45
SW +F + + D G I CG + + E LK +V
Sbjct: 155 SWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQV 192
>gi|189083776 gelsolin isoform b [Homo sapiens]
Length = 731
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 8 SWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRV 45
SW +F + + D G I CG + + E LK +V
Sbjct: 155 SWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQV 192
>gi|189083774 gelsolin isoform b [Homo sapiens]
Length = 731
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 8 SWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRV 45
SW +F + + D G I CG + + E LK +V
Sbjct: 155 SWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQV 192
>gi|189083772 gelsolin isoform b [Homo sapiens]
Length = 731
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 8 SWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRV 45
SW +F + + D G I CG + + E LK +V
Sbjct: 155 SWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQV 192
>gi|162951877 scinderin isoform 1 [Homo sapiens]
Length = 715
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 8 SWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRV 45
SW +F + D G I CG + E LK N+V
Sbjct: 156 SWDSFNKGDCFIIDLGTEIYQWCGSSCNKYERLKANQV 193
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 34 PHHQETLKKNRVVLAKQLLLSELLEHLLEKDIITLEMRELIQAKVGSFSQNVELLNL 90
P +++ L++ + +Q+ + LE LE+DI T+EM ++ K F N E L++
Sbjct: 1417 PQNKQLLQQQAKSIKEQV---KKLEDTLEEDIKTMEM---VKTKWDHFGSNFETLSV 1467
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 34 PHHQETLKKNRVVLAKQLLLSELLEHLLEKDIITLEMRELIQAKVGSFSQNVELLNL 90
P +++ L++ + +Q+ + LE LE+DI T+EM ++ K F N E L++
Sbjct: 1410 PQNKQLLQQQAKSIKEQV---KKLEDTLEEDIKTMEM---VKTKWDHFGSNFETLSV 1460
>gi|18874090 WD repeat domain 48 [Homo sapiens]
Length = 677
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 32 MHPHHQ---ETLKKNRVVLAKQLLLSELLEHLLEKDIITLE 69
+ PH +TLKK+R+ + L + +++EH+ EK II L+
Sbjct: 569 LQPHASSGAKTLKKDRLSASDMLQVRKVMEHVYEK-IINLD 608
>gi|216547715 basic helix-loop-helix domain containing, class B, 9
[Homo sapiens]
Length = 547
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 24 RRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHLLEKDIITL 68
R +GV +HP QE + + VV + LLS + +K +ITL
Sbjct: 345 RIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITL 389
>gi|216547682 basic helix-loop-helix domain containing, class B, 9
[Homo sapiens]
Length = 547
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 24 RRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHLLEKDIITL 68
R +GV +HP QE + + VV + LLS + +K +ITL
Sbjct: 345 RIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITL 389
>gi|216547672 basic helix-loop-helix domain containing, class B, 9
[Homo sapiens]
Length = 547
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 24 RRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHLLEKDIITL 68
R +GV +HP QE + + VV + LLS + +K +ITL
Sbjct: 345 RIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITL 389
>gi|216547663 basic helix-loop-helix domain containing, class B, 9
[Homo sapiens]
Length = 547
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 24 RRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHLLEKDIITL 68
R +GV +HP QE + + VV + LLS + +K +ITL
Sbjct: 345 RIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITL 389
>gi|216547655 basic helix-loop-helix domain containing, class B, 9
[Homo sapiens]
Length = 547
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 24 RRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHLLEKDIITL 68
R +GV +HP QE + + VV + LLS + +K +ITL
Sbjct: 345 RIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITL 389
>gi|216547646 basic helix-loop-helix domain containing, class B, 9
[Homo sapiens]
Length = 547
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 24 RRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHLLEKDIITL 68
R +GV +HP QE + + VV + LLS + +K +ITL
Sbjct: 345 RIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITL 389
>gi|216547639 basic helix-loop-helix domain containing, class B, 9
[Homo sapiens]
Length = 547
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 24 RRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHLLEKDIITL 68
R +GV +HP QE + + VV + LLS + +K +ITL
Sbjct: 345 RIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITL 389
>gi|39930463 basic helix-loop-helix domain containing, class B, 9
[Homo sapiens]
Length = 547
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 24 RRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHLLEKDIITL 68
R +GV +HP QE + + VV + LLS + +K +ITL
Sbjct: 345 RIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITL 389
>gi|21070980 peptidylglycine alpha-amidating monooxygenase isoform c
preproprotein [Homo sapiens]
Length = 866
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 32 MHPHHQETLKKNRVVLAKQLLLSELLEHLLEKD 64
MH HH+ET K+++ L +Q E E +L++D
Sbjct: 358 MHEHHKETEYKDKIPLLQQPKREE--EEVLDQD 388
>gi|111074532 OGT(O-Glc-NAc transferase)-interacting protein 106 KDa
isoform 1 [Homo sapiens]
Length = 953
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 37 QETLKKNRVVLAKQLLLSELLEHLLEK 63
Q LKKN+ + + LL E +EH+ E+
Sbjct: 134 QSLLKKNKTLTERNELLEEQVEHIREE 160
>gi|45359873 OGT(O-Glc-NAc transferase)-interacting protein 106 KDa
isoform 2 [Homo sapiens]
Length = 686
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 37 QETLKKNRVVLAKQLLLSELLEHLLEK 63
Q LKKN+ + + LL E +EH+ E+
Sbjct: 76 QSLLKKNKTLTERNELLEEQVEHIREE 102
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,896,057
Number of Sequences: 37866
Number of extensions: 125741
Number of successful extensions: 374
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 35
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.