Guide to the Human Genome
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Name: BHLHB9 Sequence: fasta or formatted (547aa) NCBI GI: 39930463
Description:

basic helix-loop-helix domain containing, class B, 9

Referenced in:

Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt mRNA [547aa] basic helix-loop-helix domain containing, class B, 9
alt mRNA [547aa] basic helix-loop-helix domain containing, class B, 9
alt mRNA [547aa] basic helix-loop-helix domain containing, class B, 9
alt mRNA [547aa] basic helix-loop-helix domain containing, class B, 9
alt mRNA [547aa] basic helix-loop-helix domain containing, class B, 9
alt mRNA [547aa] basic helix-loop-helix domain containing, class B, 9
alt mRNA [547aa] basic helix-loop-helix domain containing, class B, 9
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         55           2
 C cysteine            2.4         13           1
 D aspartate           3.3         18           2
 E glutamate           9.3         51           6
 F phenylalanine       3.7         20           1
 G glycine             5.1         28           1
 H histidine           1.8         10           2
 I isoleucine          6.2         34           2
 K lysine              8.4         46           2
 L leucine             6.0         33           3
 M methionine          2.6         14           1
 N asparagine          5.7         31           1
 P proline             6.2         34           2
 Q glutamine           2.6         14           2
 R arginine            4.4         24           2
 S serine              7.3         40           2
 T threonine           6.0         33           2
 V valine              6.4         35           3
 W tryptophan          1.5          8           1
 Y tyrosine            1.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   basic helix-loop-helix domain containing, class B, 9... 
BHLHB9                1.000   basic helix-loop-helix domain containing, class B, ...
BHLHB9                1.000   basic helix-loop-helix domain containing, class B, ...
BHLHB9                1.000   basic helix-loop-helix domain containing, class B, ...
BHLHB9                1.000   basic helix-loop-helix domain containing, class B, ...
BHLHB9                1.000   basic helix-loop-helix domain containing, class B, ...
BHLHB9                1.000   basic helix-loop-helix domain containing, class B, ...
BHLHB9                1.000   basic helix-loop-helix domain containing, class B, ...
GPRASP1               0.196   G protein-coupled receptor associated sorting prote...
GPRASP1               0.196   G protein-coupled receptor associated sorting prote...
GPRASP1               0.196   G protein-coupled receptor associated sorting prote...
GPRASP2               0.192   G protein-coupled receptor associated sorting protei...
GPRASP2               0.192   G protein-coupled receptor associated sorting protei...
ARMCX5                0.175   armadillo repeat containing, X-linked 5 
LOC100292655          0.145   PREDICTED: similar to armadillo repeat containing, ...
ARMCX3                0.090   armadillo repeat containing, X-linked 3 
ARMCX3                0.090   armadillo repeat containing, X-linked 3 
ARMCX3                0.090   armadillo repeat containing, X-linked 3 
ARMCX1                0.087   armadillo repeat containing, X-linked 1 
ARMC10                0.081   SVH protein isoform b 
ARMC10                0.081   SVH protein isoform a 
ARMCX2                0.065   ALEX2 protein 
ARMCX2                0.065   ALEX2 protein 
LOC389137             0.055   PREDICTED: similar to SVH protein isoform 1 
LOC389137             0.055   PREDICTED: similar to SVH protein isoform 1 
LOC389137             0.055   PREDICTED: similar to SVH protein isoform 2 
ARMC10                0.054   SVH protein isoform e 
LOC653354             0.033   PREDICTED: similar to armadillo repeat containing, ...
LOC653354             0.033   PREDICTED: similar to armadillo repeat containing, ...
LOC653354             0.033   PREDICTED: similar to armadillo repeat containing, ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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