Search of human proteins with 39930471

Search of human proteins with 39930471

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|39930471 hypothetical protein LOC84190 [Homo sapiens]
         (603 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|39930471 hypothetical protein LOC84190 [Homo sapiens]             1213   0.0  
gi|216548560 hypothetical protein LOC51093 isoform 1 [Homo sapiens]    95   2e-19
gi|216548564 hypothetical protein LOC51093 isoform 2 [Homo sapiens]    61   3e-09
gi|120953251 neuron navigator 3 [Homo sapiens]                         37   0.068
gi|39812378 RAN binding protein 9 [Homo sapiens]                       33   0.58 
gi|24431935 reticulon 4 isoform A [Homo sapiens]                       33   0.58 
gi|38049014 semenogelin I isoform b preproprotein [Homo sapiens]       32   2.2  
gi|4506883 semenogelin I isoform a preproprotein [Homo sapiens]        32   2.2  
gi|74099699 HMT1 hnRNP methyltransferase-like 4 [Homo sapiens]         32   2.2  
gi|31377575 ENTH domain containing 1 [Homo sapiens]                    31   2.9  
gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]       31   3.7  
gi|8923040 CDKN2A interacting protein [Homo sapiens]                   31   3.7  
gi|222537754 hypothetical protein LOC375337 [Homo sapiens]             30   4.9  
gi|39930371 RAB39, member RAS oncogene family [Homo sapiens]           30   4.9  
gi|253735778 Rho/Rac guanine nucleotide exchange factor 2 isofor...    30   6.4  
gi|15011974 Rho/Rac guanine nucleotide exchange factor 2 isoofor...    30   6.4  
gi|4503493 early growth response 1 [Homo sapiens]                      30   8.3  
gi|150170670 piccolo isoform 2 [Homo sapiens]                          30   8.3  
gi|42560244 peptidylprolyl isomerase G [Homo sapiens]                  30   8.3  
gi|150378539 piccolo isoform 1 [Homo sapiens]                          30   8.3  

>gi|39930471 hypothetical protein LOC84190 [Homo sapiens]
          Length = 603

 Score = 1213 bits (3138), Expect = 0.0
 Identities = 603/603 (100%), Positives = 603/603 (100%)

Query: 1   MAASCPLPVTPDLPTLRAKLQGLLQFLRDALSISNAHTVDFYTESVWEELVDLPPETVLA 60
           MAASCPLPVTPDLPTLRAKLQGLLQFLRDALSISNAHTVDFYTESVWEELVDLPPETVLA
Sbjct: 1   MAASCPLPVTPDLPTLRAKLQGLLQFLRDALSISNAHTVDFYTESVWEELVDLPPETVLA 60

Query: 61  ALRKSASETEALPSETRPLVEAEWEAGMTDFPKIFCETSQKLVSVEAFALAAKYYSVQNL 120
           ALRKSASETEALPSETRPLVEAEWEAGMTDFPKIFCETSQKLVSVEAFALAAKYYSVQNL
Sbjct: 61  ALRKSASETEALPSETRPLVEAEWEAGMTDFPKIFCETSQKLVSVEAFALAAKYYSVQNL 120

Query: 121 GICTPFEQLLVALRGNQNQRIGENQKAVEFMNMKKSHEVQAMSELISSIADYYGIKQVID 180
           GICTPFEQLLVALRGNQNQRIGENQKAVEFMNMKKSHEVQAMSELISSIADYYGIKQVID
Sbjct: 121 GICTPFEQLLVALRGNQNQRIGENQKAVEFMNMKKSHEVQAMSELISSIADYYGIKQVID 180

Query: 181 LGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWKLCHAQSRLDVNGLAL 240
           LGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWKLCHAQSRLDVNGLAL
Sbjct: 181 LGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWKLCHAQSRLDVNGLAL 240

Query: 241 KMAKERKVKNKVKNKADTEEVFNNSPTNQEKMPTSAILPDFSGSVISNIRNQMETLHSQP 300
           KMAKERKVKNKVKNKADTEEVFNNSPTNQEKMPTSAILPDFSGSVISNIRNQMETLHSQP
Sbjct: 241 KMAKERKVKNKVKNKADTEEVFNNSPTNQEKMPTSAILPDFSGSVISNIRNQMETLHSQP 300

Query: 301 HQEENLCFENSFSLINLLPINAVEPTSSQQIPNRETSEANKERRKMTSKSSESNIYSPLT 360
           HQEENLCFENSFSLINLLPINAVEPTSSQQIPNRETSEANKERRKMTSKSSESNIYSPLT
Sbjct: 301 HQEENLCFENSFSLINLLPINAVEPTSSQQIPNRETSEANKERRKMTSKSSESNIYSPLT 360

Query: 361 SFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFTSNSEIKGVCSVGCCYHLLSEE 420
           SFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFTSNSEIKGVCSVGCCYHLLSEE
Sbjct: 361 SFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFTSNSEIKGVCSVGCCYHLLSEE 420

Query: 421 FENQHKERTQEKWGFPMCHYLKEERWCCGRNARMSACLALERVAAGQGLPTESLFYRAVL 480
           FENQHKERTQEKWGFPMCHYLKEERWCCGRNARMSACLALERVAAGQGLPTESLFYRAVL
Sbjct: 421 FENQHKERTQEKWGFPMCHYLKEERWCCGRNARMSACLALERVAAGQGLPTESLFYRAVL 480

Query: 481 QDIIKDCYGITKCDRHVGKIYSKCSSFLDYVRRSLKKLGLDESKLPEKIIMNYYEKYKPR 540
           QDIIKDCYGITKCDRHVGKIYSKCSSFLDYVRRSLKKLGLDESKLPEKIIMNYYEKYKPR
Sbjct: 481 QDIIKDCYGITKCDRHVGKIYSKCSSFLDYVRRSLKKLGLDESKLPEKIIMNYYEKYKPR 540

Query: 541 MNELEAFNMLKVVLAPCIETLILLDRLCYLKEQEDIAWSALVKLFDPVKSPRCYAVIALK 600
           MNELEAFNMLKVVLAPCIETLILLDRLCYLKEQEDIAWSALVKLFDPVKSPRCYAVIALK
Sbjct: 541 MNELEAFNMLKVVLAPCIETLILLDRLCYLKEQEDIAWSALVKLFDPVKSPRCYAVIALK 600

Query: 601 KQQ 603
           KQQ
Sbjct: 601 KQQ 603


>gi|216548560 hypothetical protein LOC51093 isoform 1 [Homo sapiens]
          Length = 475

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 80/233 (34%), Positives = 113/233 (48%), Gaps = 37/233 (15%)

Query: 380 LMVGLHTCGDLAPNTLRIFTSNSEIKGVCSVGCCYHLLSEEFENQHKERTQEKWGFPMCH 439
           L+ GLH CGDL+   LR F+   E+  + SVGCCY  LS            +  G+P+  
Sbjct: 253 LLTGLHACGDLSVALLRHFSCCPEVVALASVGCCYMKLS------------DPGGYPL-- 298

Query: 440 YLKEERWCCG-------RNARMSACLALERVA-----AGQGLPTESLFYRAVLQDIIKDC 487
                +W  G          R  AC ALE  A     AG GL T    YRA L+ +I+  
Sbjct: 299 ----SQWVAGLPGYELPYRLREGACHALEEYAERLQKAGPGLRTHC--YRAALETVIRRA 352

Query: 488 YGITKCDRHVGKIYSKCSSFLDYVRRSLKKLGLDESKLPEKIIMNYYEKYKPRMNELEAF 547
               +     G          +YV+R L+++GLD  +LP  + +   + +  + N + AF
Sbjct: 353 RPELRRPGVQGIPRVHELKIEEYVQRGLQRVGLD-PQLP--LNLAALQAHVAQENRVVAF 409

Query: 548 NMLKVVLAPCIETLILLDRLCYLKEQEDIAWSALVKLFDPVKSPRCYAVIALK 600
             L ++LAP +ETLILLDRL YL+EQ   A   L+ +F P  SPR   ++A K
Sbjct: 410 FSLALLLAPLVETLILLDRLLYLQEQGFHA--ELLPIFSPELSPRNLVLVATK 460



 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 29/194 (14%)

Query: 32  SISNAHTVDFYTESVWEELVDLPPETVLAALRKSASETEAL-----PSETRPLVEAEWEA 86
           SI +A+ ++F+T+++W+ L                S  EAL     P     L+    E 
Sbjct: 30  SILDAYIIEFFTDNLWDTL--------------PCSWQEALDGLKPPQLATMLLGMPGEG 75

Query: 87  GMTDFPKIFCETSQKLVSVEAFALAAKYYSVQNLGICTPFEQLLVALRGNQNQRIGENQK 146
            +  +  ++  T   L+++++ A A  +  +   G  TP E L      N +Q       
Sbjct: 76  EVVRYRSVWPLT---LLALKSTACALAFTRMP--GFQTPSEFL-----ENPSQSSRLTAP 125

Query: 147 AVEFMNMKKSHEVQAMSELISSIADYYGIKQVIDLGSGKGYLSSFLSLKYGLKVYGIDSS 206
             + +  KK HE++ + EL+  ++D+ G  QV+D+GSG+G+LS F++L  GL V  I+  
Sbjct: 126 FRKHVRPKKQHEIRRLGELVKKLSDFTGCTQVVDVGSGQGHLSRFMALGLGLMVKSIEGD 185

Query: 207 NTNTHGAEERNRKL 220
                 A+  +++L
Sbjct: 186 QRLVERAQRLDQEL 199


>gi|216548564 hypothetical protein LOC51093 isoform 2 [Homo sapiens]
          Length = 277

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 29/194 (14%)

Query: 32  SISNAHTVDFYTESVWEELVDLPPETVLAALRKSASETEAL-----PSETRPLVEAEWEA 86
           SI +A+ ++F+T+++W+ L                S  EAL     P     L+    E 
Sbjct: 30  SILDAYIIEFFTDNLWDTL--------------PCSWQEALDGLKPPQLATMLLGMPGEG 75

Query: 87  GMTDFPKIFCETSQKLVSVEAFALAAKYYSVQNLGICTPFEQLLVALRGNQNQRIGENQK 146
            +  +  ++  T   L+++++ A A  +  +   G  TP E L      N +Q       
Sbjct: 76  EVVRYRSVWPLT---LLALKSTACALAFTRMP--GFQTPSEFL-----ENPSQSSRLTAP 125

Query: 147 AVEFMNMKKSHEVQAMSELISSIADYYGIKQVIDLGSGKGYLSSFLSLKYGLKVYGIDSS 206
             + +  KK HE++ + EL+  ++D+ G  QV+D+GSG+G+LS F++L  GL V  I+  
Sbjct: 126 FRKHVRPKKQHEIRRLGELVKKLSDFTGCTQVVDVGSGQGHLSRFMALGLGLMVKSIEGD 185

Query: 207 NTNTHGAEERNRKL 220
                 A+  +++L
Sbjct: 186 QRLVERAQRLDQEL 199


>gi|120953251 neuron navigator 3 [Homo sapiens]
          Length = 2363

 Score = 36.6 bits (83), Expect = 0.068
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 205 SSNTNTHGAEERNRKLKKHWKLCHAQSRLDVNGLALKMAKERKVKNKVKNKADTEEVFNN 264
           +S  N+ G+   + K+        A S+   N  +L   KE++ KN+ KNK  TE+    
Sbjct: 427 NSGLNSGGSTNSSPKVSPKLAPPKAGSKNLSNKKSLLQPKEKEEKNRDKNKVCTEK---- 482

Query: 265 SPTNQEKMPTSAILPDFSGSVISNIRNQMETLHSQPHQEENLCFENSFSLINLLPINAVE 324
            P  +EK   + + P  +  + S I    +T  +   ++E+L   +S     +    +  
Sbjct: 483 -PVKEEKDQVTEMAPKKTSKIASLIPKGSKTTAA---KKESLIPSSS----GIPKPGSKV 534

Query: 325 PTSSQQIPNRETSEANKERRKMTSKSSESNIYSPLT 360
           PT  Q I    T+    E+ + T  S   ++  P+T
Sbjct: 535 PTVKQTISPGSTASKESEKFRTTKGSPSQSLSKPIT 570


>gi|39812378 RAN binding protein 9 [Homo sapiens]
          Length = 729

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 282 SGSVISNIRNQMETLHSQPHQEENLCFENSFSLINLLPINAVEPTSSQQIPNRETSEANK 341
           S  VISN  +Q    HS  HQ  NL         N+  +N++  + SQQ+ N  +++ + 
Sbjct: 514 SNGVISNKAHQ-SYCHSNKHQSSNL---------NVPELNSINMSRSQQVNNFTSNDVDM 563

Query: 342 ERRKMTSKSSESNIYSPLTSFITADSELHDIIKDLE-DCLMVGLHTCG 388
           E    ++   E++    L      D E+ D   ++E D   +    CG
Sbjct: 564 ETDHYSNGVGETSSNGFLNGSSKHDHEMEDCDTEMEVDSSQLRRQLCG 611


>gi|24431935 reticulon 4 isoform A [Homo sapiens]
          Length = 1192

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 20/115 (17%)

Query: 54  PPETVLAALRKSASETE-----ALPSETRPLVEAEWE-------------AGMTDFPKIF 95
           PP T  A  R+ +S +      ALP+ + P++ +  E             AG  DFP + 
Sbjct: 169 PPSTPAAPKRRGSSGSVDETLFALPAASEPVIRSSAENMDLKEQPGNTISAGQEDFPSVL 228

Query: 96  CETSQKLVSVEAFALAA--KYYSVQNLGICTPFEQLLVALRGNQNQRIGENQKAV 148
            ET+  L S+   + A+  ++  + NL    P E  L       ++ + E  K +
Sbjct: 229 LETAASLPSLSPLSAASFKEHEYLGNLSTVLPTEGTLQENVSEASKEVSEKAKTL 283


>gi|38049014 semenogelin I isoform b preproprotein [Homo sapiens]
          Length = 402

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 13/130 (10%)

Query: 183 SGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWKLCHAQSRLDVNGLALKM 242
           SGKG  S + + +  L V+G+    T+  GA++  ++             L  N      
Sbjct: 151 SGKGISSQYSNTEERLWVHGLSKEQTSVSGAQKGRKQGGSQSSYVLQTEELVAN------ 204

Query: 243 AKERKVKNKVKNKADTEEVFNNSPTNQEKMPTSAILPDFSGSV------ISNIRNQMETL 296
            ++R+ KN  +NK   + V      +  K+ TS + P     +      I + ++++   
Sbjct: 205 KQQRETKNSHQNKGHYQNVVEVREEHSSKVQTS-LCPAHQDKLQHGSKDIFSTQDELLVY 263

Query: 297 HSQPHQEENL 306
           +   HQ +NL
Sbjct: 264 NKNQHQTKNL 273


>gi|4506883 semenogelin I isoform a preproprotein [Homo sapiens]
          Length = 462

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 13/130 (10%)

Query: 183 SGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWKLCHAQSRLDVNGLALKM 242
           SGKG  S + + +  L V+G+    T+  GA++  ++             L  N      
Sbjct: 151 SGKGISSQYSNTEERLWVHGLSKEQTSVSGAQKGRKQGGSQSSYVLQTEELVAN------ 204

Query: 243 AKERKVKNKVKNKADTEEVFNNSPTNQEKMPTSAILPDFSGSV------ISNIRNQMETL 296
            ++R+ KN  +NK   + V      +  K+ TS + P     +      I + ++++   
Sbjct: 205 KQQRETKNSHQNKGHYQNVVEVREEHSSKVQTS-LCPAHQDKLQHGSKDIFSTQDELLVY 263

Query: 297 HSQPHQEENL 306
           +   HQ +NL
Sbjct: 264 NKNQHQTKNL 273


>gi|74099699 HMT1 hnRNP methyltransferase-like 4 [Homo sapiens]
          Length = 394

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 176 KQVIDLGSGKGYLSSFLSLKYGLKVYGIDSSNTNTH 211
           K V+D+GSG G LS F +     KV+GI+ S+ + +
Sbjct: 113 KVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDY 148


>gi|31377575 ENTH domain containing 1 [Homo sapiens]
          Length = 607

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 242 MAKERKVKNKVKNKADTEEVFNNSPTNQEKMPTSAILPDFSGSVISNI 289
           MA  R+VKN VKN +D E     + +N    P+S+++ D S    + I
Sbjct: 1   MAFRRQVKNFVKNYSDAEIKVREATSNDPWGPSSSLMLDISDLTFNTI 48


>gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]
          Length = 1282

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 3/109 (2%)

Query: 232  RLDVNGLALKMAKERKVKNKVKNKADTEEVFNNSPTNQEKMPTSAILPDFSGSVI---SN 288
            R+   G+ L + K  K+  K+K      ++F N+   +    ++  +  F G+VI   S 
Sbjct: 1007 RIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSG 1066

Query: 289  IRNQMETLHSQPHQEENLCFENSFSLINLLPINAVEPTSSQQIPNRETS 337
            IR Q++     P       FE+   + +++ +    P S     N  TS
Sbjct: 1067 IRGQIKKALRAPEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTS 1115


>gi|8923040 CDKN2A interacting protein [Homo sapiens]
          Length = 580

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 21/120 (17%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 236 NGLALKMAKERKVKNKVKNKADTEEVFNNSPTNQEKMPTSAILPDFSGSVISNIRNQMET 295
           +GL  K + E  V + V   + +      +P +     TS +    +  V +++   + +
Sbjct: 317 SGLTSKTSSEASVSSSVAKNSSSSGTSLLTPKSSSSTNTSLLTSKSTSQVAASL---LAS 373

Query: 296 LHSQPHQEENLCFENSFSLINLLPINAVEPTSSQQIPNRETSEANKERRKMTSKSSESNI 355
             S       +    S + ++ L   +   TS+ Q+P++ TS++++   K + K +  ++
Sbjct: 374 KSSSQTSGSLVSKSTSLASVSQLASKSSSQTSTSQLPSKSTSQSSESSVKFSCKLTNEDV 433


>gi|222537754 hypothetical protein LOC375337 [Homo sapiens]
          Length = 1692

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 203 IDSSNTNTHGAEERNRKLKKHWKLCHAQSRLDVNGLALK---MAKERKVKNKVKNKADTE 259
           + SS T T+       KL  +     + S ++   + +K   +  ++K+K++  ++  +E
Sbjct: 548 LQSSLTETNTESSSKEKLDSNSNCLSSVSAVEPTLMVIKEPIIKDDKKIKSEELSRRGSE 607

Query: 260 EVFNNSPTNQEKMPTSAILPDFSGSVISNIRNQMETLHSQPHQEEN----------LCF- 308
            + N +   Q    T ++  +       N+     T  S+  QE N           C  
Sbjct: 608 VISNTTEDTQLTSETQSLTGN-KKKARGNLTKLNLTATSKDGQEANNSAGKTIHRKACIA 666

Query: 309 ENSFSLINLLPINAVEPTSSQQIPNRETSEANKERRKMTSKSSESNIYSPL 359
           + +F + +L+ I      ++ +IP  +    +++R+++ +KSSE   YSPL
Sbjct: 667 QQTFIVPDLVKILNTGRLTNFKIPLLKNK--SEKRKEVNAKSSEREAYSPL 715


>gi|39930371 RAB39, member RAS oncogene family [Homo sapiens]
          Length = 217

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 1/114 (0%)

Query: 283 GSVISNIRNQMETLHSQPHQEENLCFENSFSLINLLPINAVEPTSSQQIPNRETSEANKE 342
           G ++ +I N+    H +   EE   +   F ++ LL  +  +  S +Q+   E  + + +
Sbjct: 89  GFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVGHKCDLASQRQVTREEAEKLSAD 148

Query: 343 RRKMTSKSSESNIYSPLTSFITADSELHDIIKDLEDCLMVGLH-TCGDLAPNTL 395
                 ++S  +  +   SF     +++++IK  E C+  G         PNT+
Sbjct: 149 CGMKYIETSAKDATNVEESFTILTRDIYELIKKGEICIQDGWEGVKSGFVPNTV 202


>gi|253735778 Rho/Rac guanine nucleotide exchange factor 2 isoform 2
           [Homo sapiens]
          Length = 985

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 242 MAKERKVKNK------VKNKADTEEVFNNSPTNQEKMPTSAILP--DFSGSVISNIRNQM 293
           +A   KVK K      +KN    + V   S T   + P+SAI P   F  S++ + R + 
Sbjct: 83  LANCTKVKQKQQKAALLKNNTALQSVSLRSKTTIRERPSSAIYPSDSFRQSLLGSRRGR- 141

Query: 294 ETLHSQPHQEENLCFENSFSLINLL-PINAVEPTSSQQIPNRETSEANKERRKMTSKS-- 350
                      +L    S S  N+    N   P   ++I ++ T   N   R ++ +S  
Sbjct: 142 ----------SSLSLAKSVSTTNIAGHFNDESPLGLRRILSQSTDSLNMRNRTLSVESLI 191

Query: 351 SESNIYSPLTSFITADSE 368
            E  IYS L S    D +
Sbjct: 192 DEEVIYSELMSDFEMDEK 209


>gi|15011974 Rho/Rac guanine nucleotide exchange factor 2 isooform 3
           [Homo sapiens]
          Length = 958

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 242 MAKERKVKNK------VKNKADTEEVFNNSPTNQEKMPTSAILP--DFSGSVISNIRNQM 293
           +A   KVK K      +KN    + V   S T   + P+SAI P   F  S++ + R + 
Sbjct: 56  LANCTKVKQKQQKAALLKNNTALQSVSLRSKTTIRERPSSAIYPSDSFRQSLLGSRRGR- 114

Query: 294 ETLHSQPHQEENLCFENSFSLINLL-PINAVEPTSSQQIPNRETSEANKERRKMTSKS-- 350
                      +L    S S  N+    N   P   ++I ++ T   N   R ++ +S  
Sbjct: 115 ----------SSLSLAKSVSTTNIAGHFNDESPLGLRRILSQSTDSLNMRNRTLSVESLI 164

Query: 351 SESNIYSPLTSFITADSE 368
            E  IYS L S    D +
Sbjct: 165 DEEVIYSELMSDFEMDEK 182


>gi|4503493 early growth response 1 [Homo sapiens]
          Length = 543

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 258 TEEVFNNSPTNQEKMPTSAILPDFSGSVISNIRNQMETLHSQPHQEENLCFENSFSLINL 317
           T E F +   N EK+      P  +  +         +L   P+    L  E  FSL++ 
Sbjct: 101 TAESFPDISLNNEKVLVETSYPSQTTRLPPITYTGRFSLEPAPNSGNTLWPEPLFSLVSG 160

Query: 318 LPINAVEPTSSQQIPNRETSEANKERRKMTSKSSESN----IYSPLTSFITADSEL 369
           L      P SS   P+   S A+  +    S +  SN    IYS   +F T ++++
Sbjct: 161 LVSMTNPPASSSSAPSPAASSASASQSPPLSCAVPSNDSSPIYSAAPTFPTPNTDI 216


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 11/119 (9%)

Query: 244  KERKVKNKVKNKADTEEVFNNSPTNQEKMPTSAILPDFSGSVISNIRN--QMETLHSQPH 301
            ++RK  +K K+K D +E+       + K P S + P    S    +R   +ME LH    
Sbjct: 1798 QQRKSSSK-KSKKDKDELRAQRRRERPKTPPSNLSPIEDASPTEELRQAAEMEELHRSSC 1856

Query: 302  QEENLCFENSFSLINLLPINAVE-------PTS-SQQIPNRETSEANKERRKMTSKSSE 352
             E +   E+      + P   +E       PT+ S   P  E S   KE  +   KS+E
Sbjct: 1857 SEYSPSIESDPEGFEISPEKIIEVQKVYKLPTAVSLYSPTDEQSIMQKEGSQKALKSAE 1915


>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
          Length = 754

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 23/140 (16%)

Query: 213 AEERNRKLKKHWKLCHAQSRLDVNGLALKMAKERKVKNKVKNKADTEEVFNNSPTNQEKM 272
           +E  NRK +K  K+   +S      +     K+ K KNKVK +A ++    +   ++ K 
Sbjct: 413 SESPNRKNEKEKKVKDHKSNSKERDIRRNSEKDDKYKNKVKKRAKSKSRSKSKEKSKSKE 472

Query: 273 PTSAILPDFSGSVISNIRNQMETLHSQPHQEENLCFENSFSLINLLPINAVEPTSSQQIP 332
             S            + RN+ + + S+    ++   EN         +   E  S  +  
Sbjct: 473 RDS-----------KHNRNEEKRMRSRSKGRDH---EN---------VKEKEKQSDSKGK 509

Query: 333 NRETSEANKERRKMTSKSSE 352
           ++E S + ++ +++ SKS+E
Sbjct: 510 DQERSRSKEKSKQLESKSNE 529


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 11/119 (9%)

Query: 244  KERKVKNKVKNKADTEEVFNNSPTNQEKMPTSAILPDFSGSVISNIRN--QMETLHSQPH 301
            ++RK  +K K+K D +E+       + K P S + P    S    +R   +ME LH    
Sbjct: 1798 QQRKSSSK-KSKKDKDELRAQRRRERPKTPPSNLSPIEDASPTEELRQAAEMEELHRSSC 1856

Query: 302  QEENLCFENSFSLINLLPINAVE-------PTS-SQQIPNRETSEANKERRKMTSKSSE 352
             E +   E+      + P   +E       PT+ S   P  E S   KE  +   KS+E
Sbjct: 1857 SEYSPSIESDPEGFEISPEKIIEVQKVYKLPTAVSLYSPTDEQSIMQKEGSQKALKSAE 1915


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,771,525
Number of Sequences: 37866
Number of extensions: 933539
Number of successful extensions: 2815
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2797
Number of HSP's gapped (non-prelim): 31
length of query: 603
length of database: 18,247,518
effective HSP length: 108
effective length of query: 495
effective length of database: 14,157,990
effective search space: 7008205050
effective search space used: 7008205050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.