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Search of human proteins with 39545580
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39545580 cereblon [Homo sapiens]
(442 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39545580 cereblon [Homo sapiens] 914 0.0
gi|151301098 zinc finger, DBF-type containing 2 [Homo sapiens] 44 4e-04
gi|112799849 tumor protein p53 binding protein, 2 isoform 1 [Hom... 34 0.30
gi|4885643 tumor protein p53 binding protein, 2 isoform 2 [Homo ... 34 0.30
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 34 0.30
gi|14165274 golgi-associated microtubule-binding protein HOOK3 [... 34 0.30
gi|139394579 zinc finger and BTB domain containing 40 [Homo sapi... 31 2.0
gi|139394556 zinc finger and BTB domain containing 40 [Homo sapi... 31 2.0
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 30 3.4
gi|217330641 IWS1 homolog [Homo sapiens] 30 3.4
gi|4504779 integrin, beta 8 precursor [Homo sapiens] 30 3.4
gi|239757983 PREDICTED: similar to protein-L-isoaspartate (D-asp... 30 5.7
gi|239756570 PREDICTED: similar to protein-L-isoaspartate (D-asp... 30 5.7
gi|239752577 PREDICTED: hypothetical protein XP_002348294 [Homo ... 30 5.7
gi|239747889 PREDICTED: hypothetical protein XP_002346467 [Homo ... 30 5.7
gi|239745549 PREDICTED: hypothetical protein XP_002343514 [Homo ... 30 5.7
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 30 5.7
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 30 5.7
gi|189491759 p21-activated kinase 3 isoform d [Homo sapiens] 30 5.7
gi|189491757 p21-activated kinase 3 isoform c [Homo sapiens] 30 5.7
gi|189491755 p21-activated kinase 3 isoform b [Homo sapiens] 30 5.7
gi|189491753 p21-activated kinase 3 isoform a [Homo sapiens] 30 5.7
gi|189491751 p21-activated kinase 3 isoform a [Homo sapiens] 30 5.7
gi|4505601 p21-activated kinase 3 isoform a [Homo sapiens] 30 5.7
gi|4504487 histidine rich calcium binding protein precursor [Hom... 30 5.7
gi|7657326 male-enhanced antigen [Homo sapiens] 30 5.7
gi|38787935 BMP-2 inducible kinase isoform a [Homo sapiens] 29 7.5
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 29 7.5
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 29 7.5
gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo sap... 29 7.5
>gi|39545580 cereblon [Homo sapiens]
Length = 442
Score = 914 bits (2361), Expect = 0.0
Identities = 442/442 (100%), Positives = 442/442 (100%)
Query: 1 MAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYL 60
MAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYL
Sbjct: 1 MAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYL 60
Query: 61 GADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTF 120
GADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTF
Sbjct: 61 GADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTF 120
Query: 121 AVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQA 180
AVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQA
Sbjct: 121 AVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQA 180
Query: 181 KVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLTSW 240
KVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLTSW
Sbjct: 181 KVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLTSW 240
Query: 241 PRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLK 300
PRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLK
Sbjct: 241 PRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLK 300
Query: 301 IGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETL 360
IGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETL
Sbjct: 301 IGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETL 360
Query: 361 TVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRS 420
TVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRS
Sbjct: 361 TVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRS 420
Query: 421 ALLPTIPDTEDEISPDKVILCL 442
ALLPTIPDTEDEISPDKVILCL
Sbjct: 421 ALLPTIPDTEDEISPDKVILCL 442
>gi|151301098 zinc finger, DBF-type containing 2 [Homo sapiens]
Length = 2354
Score = 43.5 bits (101), Expect = 4e-04
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
Query: 8 QDAAH-NMGN-----HLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYLG 61
QD H N G+ HL +E EEEDE +VED+D+ E + +
Sbjct: 66 QDETHVNTGSSSEVVHLDDAFSEEEEEDEDKVEDEDATEERPSEV--------------S 111
Query: 62 ADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFH 103
+EE H R + Q + V P V+ L GQ PL+ H
Sbjct: 112 EPIEELHSRPHKSQEGTQEVSVRPSVIQKLEKGQQQPLEFVH 153
>gi|112799849 tumor protein p53 binding protein, 2 isoform 1 [Homo
sapiens]
Length = 1134
Score = 33.9 bits (76), Expect = 0.30
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 105 QEVSMVRNLIQKDRTFAVLAYSNVQE--REAQFGTTAEIYAYREEQDFGIEIVKVKAIGR 162
+E+ + NL Q+ + VLA S V+E R+ + I ++ + Q E+ ++
Sbjct: 218 EEIEQMNNLFQQKQRELVLAVSKVEELTRQLEMLKNGRIDSHHDNQSAVAELDRL----- 272
Query: 163 QRFKVLELRTQSDGIQQAKVQILPECV 189
+K L+LR + + Q AK+Q EC+
Sbjct: 273 --YKELQLRNKLNQEQNAKLQQQRECL 297
>gi|4885643 tumor protein p53 binding protein, 2 isoform 2 [Homo
sapiens]
Length = 1005
Score = 33.9 bits (76), Expect = 0.30
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 105 QEVSMVRNLIQKDRTFAVLAYSNVQE--REAQFGTTAEIYAYREEQDFGIEIVKVKAIGR 162
+E+ + NL Q+ + VLA S V+E R+ + I ++ + Q E+ ++
Sbjct: 89 EEIEQMNNLFQQKQRELVLAVSKVEELTRQLEMLKNGRIDSHHDNQSAVAELDRL----- 143
Query: 163 QRFKVLELRTQSDGIQQAKVQILPECV 189
+K L+LR + + Q AK+Q EC+
Sbjct: 144 --YKELQLRNKLNQEQNAKLQQQRECL 168
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 33.9 bits (76), Expect = 0.30
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 60/263 (22%)
Query: 59 YLGADMEEFHGRTLHDDDSCQV------IPVLPQVMMILIPGQTLPLQLFHPQEVSMVRN 112
YL ++ E + ++D+++ ++ +P+ V + P PL +F P+ M+R
Sbjct: 542 YLPDELSE--RKKIYDEETAELSHLTKNVPIF--VCTMAYPTVPCPLHVFEPRYRLMIRR 597
Query: 113 LIQKDRTFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRT 172
IQ + S+ Q A +G +I D G + V +G +RF+VL+ R
Sbjct: 598 SIQTGTKQFGMCVSDTQNSFADYGCMLQIRNVHFLPD-GRSV--VDTVGGKRFRVLK-RG 653
Query: 173 QSDGIQQAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKF 232
DG A ++ L + V ED+ R+
Sbjct: 654 MKDGYCTADIEYLEDV-----------------------KVENEDEIK-------NLREL 683
Query: 233 HCANLTSWPRWLYSLYDAETLMDRIKKQ-------LREWDENLKDDSLPSNPIDFSYRVA 285
H + W + L DR + Q + E +ENL+ + P+ P + + +
Sbjct: 684 HDLVYSQACSWF------QNLRDRFRSQILQHFGSMPEREENLQ--AAPNGPA-WCWWLL 734
Query: 286 ACLPIDDVLRIQLLKIGSAIQRL 308
A LP+D ++ +L + S +RL
Sbjct: 735 AVLPVDPRYQLSVLSMKSLKERL 757
>gi|14165274 golgi-associated microtubule-binding protein HOOK3
[Homo sapiens]
Length = 718
Score = 33.9 bits (76), Expect = 0.30
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 228 QKRKFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAAC 287
+K + N S L A + ++ K+Q+ E L ++S ++ +DF Y+
Sbjct: 342 EKNTMYMQNTVSLEEELRKANAARSQLETYKRQVVELQNRLSEESKKADKLDFEYK---- 397
Query: 288 LPIDDVLRIQLLKIGSAIQRLRCELDIMNK-CTSLCCKQCQETEITTK 334
L+ ++ + RLR E D + + L C Q QE ++TT+
Sbjct: 398 -----RLKEKVDSLQKEKDRLRTERDSLKETIEELRCVQAQEGQLTTQ 440
>gi|139394579 zinc finger and BTB domain containing 40 [Homo sapiens]
Length = 1239
Score = 31.2 bits (69), Expect = 2.0
Identities = 44/211 (20%), Positives = 75/211 (35%), Gaps = 21/211 (9%)
Query: 12 HNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYLGADMEEFHGRT 71
HN +H + A++ + S + PN I + H ADM+
Sbjct: 1024 HNRTHHPDVFAAQNHRSSKFSSLQCSSCDKTFPNTIEHKKHIKAEH----ADMK------ 1073
Query: 72 LHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTFAVLAYSNVQER 131
H+ D C+ + P ++ + + Q Q F + + + E
Sbjct: 1074 FHECDQCKELFPTPALLQVHVKCQHSGSQPFRCLYCAATFRFPGALQHHVTTEHFKQSET 1133
Query: 132 EAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQAKVQILPECVLP 191
E++ + + D +E + KV+ TQ+ Q A+V PE V P
Sbjct: 1134 TFPCELCGELFTSQAQLDSHLE--------SEHPKVMSTETQAAASQMAQVIQTPEPVAP 1185
Query: 192 STMSAVQLE--SLNKCQIFPSKPVSREDQCS 220
T + LE L Q+F + P S+ Q S
Sbjct: 1186 -TEQVITLEETQLAGSQVFVTLPDSQASQAS 1215
>gi|139394556 zinc finger and BTB domain containing 40 [Homo sapiens]
Length = 1239
Score = 31.2 bits (69), Expect = 2.0
Identities = 44/211 (20%), Positives = 75/211 (35%), Gaps = 21/211 (9%)
Query: 12 HNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYLGADMEEFHGRT 71
HN +H + A++ + S + PN I + H ADM+
Sbjct: 1024 HNRTHHPDVFAAQNHRSSKFSSLQCSSCDKTFPNTIEHKKHIKAEH----ADMK------ 1073
Query: 72 LHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTFAVLAYSNVQER 131
H+ D C+ + P ++ + + Q Q F + + + E
Sbjct: 1074 FHECDQCKELFPTPALLQVHVKCQHSGSQPFRCLYCAATFRFPGALQHHVTTEHFKQSET 1133
Query: 132 EAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQAKVQILPECVLP 191
E++ + + D +E + KV+ TQ+ Q A+V PE V P
Sbjct: 1134 TFPCELCGELFTSQAQLDSHLE--------SEHPKVMSTETQAAASQMAQVIQTPEPVAP 1185
Query: 192 STMSAVQLE--SLNKCQIFPSKPVSREDQCS 220
T + LE L Q+F + P S+ Q S
Sbjct: 1186 -TEQVITLEETQLAGSQVFVTLPDSQASQAS 1215
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 30.4 bits (67), Expect = 3.4
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 3 GEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNI-INFDTSLPTSHTYLG 61
G D ++ + ++LP + + EEE+E +V A+ + + D L
Sbjct: 113 GSKDAEERKEYIPDYLPPIVSSQEEEEEEQVPTDGGTSAEAMQVPLEEDDELEEEEI--- 169
Query: 62 ADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQE 106
+ E F G+ D + +P + + ++ G TL + L +E
Sbjct: 170 INDENFLGKRPLDSPEAEELPAMKRPRLLSTKGDTLDVVLLEARE 214
>gi|217330641 IWS1 homolog [Homo sapiens]
Length = 819
Score = 30.4 bits (67), Expect = 3.4
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 23 AESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYLGADMEEFHGRTLHDDDS 77
+E+EE + + D +S+E KP + + ++ P H ++ EE + D +S
Sbjct: 198 SENEEPPKPRMSDSESEELPKPQVSDSESEEPPRHQASDSENEELPKPRISDSES 252
Score = 30.4 bits (67), Expect = 3.4
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 23 AESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYLGADMEEFHGRTLHDDDS 77
+ESEE + D +++E KP I + ++ P H ++ EE + D +S
Sbjct: 224 SESEEPPRHQASDSENEELPKPRISDSESEDPPRHQASDSENEELPKPRISDSES 278
>gi|4504779 integrin, beta 8 precursor [Homo sapiens]
Length = 769
Score = 30.4 bits (67), Expect = 3.4
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 352 PHGYVH-----ETLTVYKAC--NLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTA 404
PHGY+H E +T ++ + G T F + Q +C SHIGW+ A
Sbjct: 221 PHGYIHVLSLTENITEFEKAVHRQKISGNIDTPEGGFDA----MLQAAVCESHIGWRKEA 276
Query: 405 TK 406
+
Sbjct: 277 KR 278
>gi|239757983 PREDICTED: similar to protein-L-isoaspartate
(D-aspartate) O-methyltransferase domain containing 1
[Homo sapiens]
Length = 132
Score = 29.6 bits (65), Expect = 5.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 14 MGNHLPLLPAESEEEDEM-----EVEDQDSKEAKKP 44
+GN L P +SEE++EM E E++D EA KP
Sbjct: 66 VGNQLIPQPLDSEEDEEMEEDNKEEEEKDHSEAMKP 101
>gi|239756570 PREDICTED: similar to protein-L-isoaspartate
(D-aspartate) O-methyltransferase domain containing 1
[Homo sapiens]
Length = 150
Score = 29.6 bits (65), Expect = 5.7
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 16 NHLPLLPAESEEEDEM-----EVEDQDSKEAKKP 44
N L L P +SEE++EM E E++D EA KP
Sbjct: 86 NQLILQPLDSEEDEEMEEDNKEEEEKDHSEAMKP 119
>gi|239752577 PREDICTED: hypothetical protein XP_002348294 [Homo
sapiens]
Length = 150
Score = 29.6 bits (65), Expect = 5.7
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 16 NHLPLLPAESEEEDEM-----EVEDQDSKEAKKP 44
N L L P +SEE++EM E E++D EA KP
Sbjct: 86 NQLILQPLDSEEDEEMEEDNKEEEEKDHSEAMKP 119
>gi|239747889 PREDICTED: hypothetical protein XP_002346467 [Homo
sapiens]
Length = 132
Score = 29.6 bits (65), Expect = 5.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 14 MGNHLPLLPAESEEEDEM-----EVEDQDSKEAKKP 44
+GN L P +SEE++EM E E++D EA KP
Sbjct: 66 VGNQLIPQPLDSEEDEEMEEDNKEEEEKDHSEAMKP 101
>gi|239745549 PREDICTED: hypothetical protein XP_002343514 [Homo
sapiens]
Length = 150
Score = 29.6 bits (65), Expect = 5.7
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 16 NHLPLLPAESEEEDEM-----EVEDQDSKEAKKP 44
N L L P +SEE++EM E E++D EA KP
Sbjct: 86 NQLILQPLDSEEDEEMEEDNKEEEEKDHSEAMKP 119
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 29.6 bits (65), Expect = 5.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 7 QQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIIN 48
QQ P+ + EE+DE E E + KE +KP + N
Sbjct: 499 QQQQQQQQQQQQPMPRSSQEEKDEKEKEKEAEKEEEKPEVEN 540
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 29.6 bits (65), Expect = 5.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 7 QQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIIN 48
QQ P+ + EE+DE E E + KE +KP + N
Sbjct: 499 QQQQQQQQQQQQPMPRSSQEEKDEKEKEKEAEKEEEKPEVEN 540
>gi|189491759 p21-activated kinase 3 isoform d [Homo sapiens]
Length = 559
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 19 PLLPAESEEEDEMEVEDQDSKE 40
PL P SEEEDE E E++D E
Sbjct: 180 PLAPPVSEEEDEEEEEEEDENE 201
>gi|189491757 p21-activated kinase 3 isoform c [Homo sapiens]
Length = 565
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 19 PLLPAESEEEDEMEVEDQDSKE 40
PL P SEEEDE E E++D E
Sbjct: 186 PLAPPVSEEEDEEEEEEEDENE 207
>gi|189491755 p21-activated kinase 3 isoform b [Homo sapiens]
Length = 580
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 19 PLLPAESEEEDEMEVEDQDSKE 40
PL P SEEEDE E E++D E
Sbjct: 201 PLAPPVSEEEDEEEEEEEDENE 222
>gi|189491753 p21-activated kinase 3 isoform a [Homo sapiens]
Length = 544
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 19 PLLPAESEEEDEMEVEDQDSKE 40
PL P SEEEDE E E++D E
Sbjct: 165 PLAPPVSEEEDEEEEEEEDENE 186
>gi|189491751 p21-activated kinase 3 isoform a [Homo sapiens]
Length = 544
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 19 PLLPAESEEEDEMEVEDQDSKE 40
PL P SEEEDE E E++D E
Sbjct: 165 PLAPPVSEEEDEEEEEEEDENE 186
>gi|4505601 p21-activated kinase 3 isoform a [Homo sapiens]
Length = 544
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 19 PLLPAESEEEDEMEVEDQDSKE 40
PL P SEEEDE E E++D E
Sbjct: 165 PLAPPVSEEEDEEEEEEEDENE 186
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 29.6 bits (65), Expect = 5.7
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 3 GEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYLGA 62
G DQ+D H L E EEE++ E E+++ E ++ L H+
Sbjct: 512 GSRDQEDEEDEEEGHGLSLNQEEEEEEDKEEEEEEEDEERREERAEVGAPLSPDHSEEEE 571
Query: 63 DMEE 66
+ EE
Sbjct: 572 EEEE 575
>gi|7657326 male-enhanced antigen [Homo sapiens]
Length = 185
Score = 29.6 bits (65), Expect = 5.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 6 DQQDAAHNMGNHLPLLPAESEEEDE 30
D QD +G HLP P ESE+EDE
Sbjct: 95 DIQDRIQALGLHLPDPPLESEDEDE 119
>gi|38787935 BMP-2 inducible kinase isoform a [Homo sapiens]
Length = 1161
Score = 29.3 bits (64), Expect = 7.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 6 DQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAK 42
D N+G+ L+ +E EEE+E D D ++AK
Sbjct: 774 DDDTEPENLGHRPLLMDSEDEEEEEKHSSDSDYEQAK 810
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 29.3 bits (64), Expect = 7.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 342 LCGPMAAYVN--PHGYVHETLTVYKACN-----LNLIGRPSTEHSWFPGYAWTVAQ 390
+CG + Y + PHG+ TL + N + LI + TEH+ Y W + Q
Sbjct: 4956 ICGIGSDYFDTTPHGFETHTLEEHNLANYMFFLMYLINKDETEHTGQESYVWKMYQ 5011
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 29.3 bits (64), Expect = 7.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 342 LCGPMAAYVN--PHGYVHETLTVYKACN-----LNLIGRPSTEHSWFPGYAWTVAQ 390
+CG + Y + PHG+ TL + N + LI + TEH+ Y W + Q
Sbjct: 4961 ICGIGSDYFDTTPHGFETHTLEEHNLANYMFFLMYLINKDETEHTGQESYVWKMYQ 5016
>gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo
sapiens]
Length = 594
Score = 29.3 bits (64), Expect = 7.5
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 13 NMGNHLPLLPAESEEEDEMEVEDQDSKEAKK 43
N+ + L L ++S+EEDE E E+++ KEA++
Sbjct: 247 NLRDELLQLYSDSDEEDEDEEEEEEEKEAEE 277
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,580,128
Number of Sequences: 37866
Number of extensions: 792313
Number of successful extensions: 3101
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3049
Number of HSP's gapped (non-prelim): 63
length of query: 442
length of database: 18,247,518
effective HSP length: 105
effective length of query: 337
effective length of database: 14,271,588
effective search space: 4809525156
effective search space used: 4809525156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.