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Search of human proteins with 38327029
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38327029 ubiquitination factor E4A [Homo sapiens]
(1073 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38327029 ubiquitination factor E4A [Homo sapiens] 2142 0.0
gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens] 277 4e-74
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens] 277 4e-74
gi|56181387 STIP1 homology and U-box containing protein 1 [Homo ... 49 2e-05
gi|7662344 U-box domain containing 5 isoform a [Homo sapiens] 41 0.005
gi|40806196 U-box domain containing 5 isoform b [Homo sapiens] 41 0.005
gi|189571685 WD repeat, sterile alpha motif and U-box domain con... 35 0.29
gi|189571683 WD repeat, sterile alpha motif and U-box domain con... 35 0.29
gi|189571681 WD repeat, sterile alpha motif and U-box domain con... 35 0.29
gi|225579095 S-phase cyclin A-associated protein in the ER isofo... 34 0.85
gi|225579092 S-phase cyclin A-associated protein in the ER isofo... 34 0.85
gi|63079709 apolipoprotein AV [Homo sapiens] 32 2.5
gi|93102424 hypothetical protein LOC23116 [Homo sapiens] 32 2.5
gi|156104908 myosin heavy chain 6 [Homo sapiens] 32 3.2
gi|82546832 SEC8 protein isoform b [Homo sapiens] 31 7.2
gi|82546830 SEC8 protein isoform a [Homo sapiens] 31 7.2
gi|7657381 PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom... 31 7.2
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 30 9.4
gi|62244004 modulator of estrogen induced transcription isoform ... 30 9.4
gi|212549557 zinc finger protein 860 [Homo sapiens] 30 9.4
>gi|38327029 ubiquitination factor E4A [Homo sapiens]
Length = 1073
Score = 2142 bits (5549), Expect = 0.0
Identities = 1073/1073 (100%), Positives = 1073/1073 (100%)
Query: 1 MTDQENNNNISSNPFAALFGSLADAKQFAAIQKEQLKQQSDELPASPDDSDNSVSESLDE 60
MTDQENNNNISSNPFAALFGSLADAKQFAAIQKEQLKQQSDELPASPDDSDNSVSESLDE
Sbjct: 1 MTDQENNNNISSNPFAALFGSLADAKQFAAIQKEQLKQQSDELPASPDDSDNSVSESLDE 60
Query: 61 FDYSVAEISRSFRSQQEICEQLNINHMIQRIFLITLDNSDPSLKSGNGIPSRCVYLEEMA 120
FDYSVAEISRSFRSQQEICEQLNINHMIQRIFLITLDNSDPSLKSGNGIPSRCVYLEEMA
Sbjct: 61 FDYSVAEISRSFRSQQEICEQLNINHMIQRIFLITLDNSDPSLKSGNGIPSRCVYLEEMA 120
Query: 121 VELEDQDWLDMSNVEQALFARLLLQDPGNHLINMTSSTTLNLSADRDAGERHIFCYLYSC 180
VELEDQDWLDMSNVEQALFARLLLQDPGNHLINMTSSTTLNLSADRDAGERHIFCYLYSC
Sbjct: 121 VELEDQDWLDMSNVEQALFARLLLQDPGNHLINMTSSTTLNLSADRDAGERHIFCYLYSC 180
Query: 181 FQRAKEEITKVPENLLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIHEQLVDLMLEAIQGA 240
FQRAKEEITKVPENLLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIHEQLVDLMLEAIQGA
Sbjct: 181 FQRAKEEITKVPENLLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIHEQLVDLMLEAIQGA 240
Query: 241 REYMNKIYFEDVTEFLEEVIEALILDEEVRTFPEVMIPVFDILLGRIKDLELCQILLYAY 300
REYMNKIYFEDVTEFLEEVIEALILDEEVRTFPEVMIPVFDILLGRIKDLELCQILLYAY
Sbjct: 241 REYMNKIYFEDVTEFLEEVIEALILDEEVRTFPEVMIPVFDILLGRIKDLELCQILLYAY 300
Query: 301 LDILLYFTRQKDMAKVFVEYIQPKDPTNGQMYQKTLLGVILSISCLLKTPGVVENHGYFL 360
LDILLYFTRQKDMAKVFVEYIQPKDPTNGQMYQKTLLGVILSISCLLKTPGVVENHGYFL
Sbjct: 301 LDILLYFTRQKDMAKVFVEYIQPKDPTNGQMYQKTLLGVILSISCLLKTPGVVENHGYFL 360
Query: 361 NPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILSWLGNCLHANAGR 420
NPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILSWLGNCLHANAGR
Sbjct: 361 NPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILSWLGNCLHANAGR 420
Query: 421 TKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFNPTYCALKELNDE 480
TKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFNPTYCALKELNDE
Sbjct: 421 TKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFNPTYCALKELNDE 480
Query: 481 ERKIKNVHMRGLDKETCLIPAVQEPKFPQNYNLVTENLALTEYTLYLGFHRLHDQMVKIN 540
ERKIKNVHMRGLDKETCLIPAVQEPKFPQNYNLVTENLALTEYTLYLGFHRLHDQMVKIN
Sbjct: 481 ERKIKNVHMRGLDKETCLIPAVQEPKFPQNYNLVTENLALTEYTLYLGFHRLHDQMVKIN 540
Query: 541 QNLHRLQVAWRDAQQSSSPAADNLREQFERLMTIYLSTKTAMTEPQMLQNCLNLQVSMAV 600
QNLHRLQVAWRDAQQSSSPAADNLREQFERLMTIYLSTKTAMTEPQMLQNCLNLQVSMAV
Sbjct: 541 QNLHRLQVAWRDAQQSSSPAADNLREQFERLMTIYLSTKTAMTEPQMLQNCLNLQVSMAV 600
Query: 601 LLVQLAIGNEGSQPIELTFPLPDGYSSLAYVPEFFADNLGDFLIFLRRFADDILETSADS 660
LLVQLAIGNEGSQPIELTFPLPDGYSSLAYVPEFFADNLGDFLIFLRRFADDILETSADS
Sbjct: 601 LLVQLAIGNEGSQPIELTFPLPDGYSSLAYVPEFFADNLGDFLIFLRRFADDILETSADS 660
Query: 661 LEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHRKRVFCNFQ 720
LEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHRKRVFCNFQ
Sbjct: 661 LEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHRKRVFCNFQ 720
Query: 721 YAPQLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKDLADYAS 780
YAPQLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKDLADYAS
Sbjct: 721 YAPQLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKDLADYAS 780
Query: 781 KNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIEKDRGEWDSLTPEARREKE 840
KNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIEKDRGEWDSLTPEARREKE
Sbjct: 781 KNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIEKDRGEWDSLTPEARREKE 840
Query: 841 AGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKM 900
AGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKM
Sbjct: 841 AGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKM 900
Query: 901 GALKVKDFSEFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGRSYSPTLFAQTVRVLKK 960
GALKVKDFSEFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGRSYSPTLFAQTVRVLKK
Sbjct: 901 GALKVKDFSEFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGRSYSPTLFAQTVRVLKK 960
Query: 961 INKPGNMIMAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVT 1020
INKPGNMIMAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVT
Sbjct: 961 INKPGNMIMAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVT 1020
Query: 1021 VDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQKEQLE 1073
VDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQKEQLE
Sbjct: 1021 VDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQKEQLE 1073
>gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens]
Length = 1173
Score = 277 bits (708), Expect = 4e-74
Identities = 246/931 (26%), Positives = 434/931 (46%), Gaps = 89/931 (9%)
Query: 170 ERHIFCYLYSCFQRAKEEITKVPENLLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIHEQL 229
E + YL CF R E K P+ AV + +SN R+ ++ V Q Q
Sbjct: 294 ETDMLNYLIECFDRVGIEEKKAPKMCSQPAV---SQLLSNIRSQCISHTALVLQGSLTQP 350
Query: 230 VDLMLEAIQGAREYMNKIYFEDVTEFLEEVIEALILDEEVRTFPEVMIPVFDILLGRIKD 289
L + + + F++E++ DEEV F ++ IP+ L K+
Sbjct: 351 RSLQQPSFLVPYMLCRNLPYG----FIQELVRTTHQDEEV--FKQIFIPILQGLALAAKE 404
Query: 290 LELCQILLYAYLDILLYFTRQKD---------MAKVFVEYIQPKDPTNGQMYQK-TLLGV 339
L L L K +A + + + P G+ Q+ + LG
Sbjct: 405 CSLDSDYFKYPLMALGELCETKFGKTHPVCNLVASLRLWLPKSLSPGCGRELQRLSYLGA 464
Query: 340 ILSISCLLKTP-GVVENHGYFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQL 398
S S + VVE YF P+ + + +V ++ ++ ++++++L ++L L
Sbjct: 465 FFSFSVFAEDDVKVVEK--YFSGPAITL-ENTRVVSQSLQHYLELGRQELFKILHSIL-L 520
Query: 399 SPETKHCILSWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCK 458
+ ET+ LS++ ++AN + ++ + ++ ++D F LN L +L
Sbjct: 521 NGETREAALSYMAAVVNANMKKAQMQTDD------RLVSTDGFMLNFLWVLQQLSTKI-- 572
Query: 459 PRSSRLLTFNPTY-----CALKELNDEERKIKNVHMRGLDKETCLI----PAVQEPKFPQ 509
+L T +PTY C + NDE R N M ++ + P EPKFP
Sbjct: 573 ----KLETVDPTYIFHPRCRITLPNDETRV--NATMEDVNDWLTELYGDQPPFSEPKFPT 626
Query: 510 NYNLVTENL----ALTEYTLYLGFHRLHDQMVKINQNLHRLQVAWRDAQQSSSPAADNLR 565
+T + L Y+ R ++ + ++L + W+D SP A R
Sbjct: 627 ECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNNESQWKD-----SPLATRHR 681
Query: 566 E-------QFERLMTIYLSTKTAMTEPQMLQNCLNLQVSMAVLLVQLAIGNEGSQPIELT 618
E Q ++L+ + + L+ CLN + LL+++ + + P ++T
Sbjct: 682 EMLKRCKTQLKKLVRCKACADAGLLDESFLRRCLNFYGLLIQLLLRIL---DPAYP-DIT 737
Query: 619 FPL-PDGYSSLAYVPEFFADNLGDFLIFLRRFADDILETSADSLEHVLHFITIFTGSIER 677
PL D A +PEF+ +++ +FL F+ +++ L + ++ F+ + +
Sbjct: 738 LPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQALYEPCT--QDIVMFLVVMLCNQNY 795
Query: 678 MKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHRKRVFCNFQYAPQLAEALIKVFVDIE 737
++NP+L AKL EV+ P + + + L +L+K + D+E
Sbjct: 796 IRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLS------TKLLVPSLMKFYTDVE 849
Query: 738 FTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKDLADYASKNLEAMNPPLFLRFLNL 797
TG +F KF R + I + +W +++A + + E + F+R++N+
Sbjct: 850 HTGATSEFYDKFTIRYHISTIFKSLW---------QNIAHHGTFMEEFNSGKQFVRYINM 900
Query: 798 LMNDAIFLLDEAIQYLSKI-KIQQIEKDRGEWDSLTPEARREKEAGLQMFGQLARFHNIM 856
L+ND FLLDE+++ L +I ++Q+ K++ +WD L + ++ +++ L +++R + +
Sbjct: 901 LINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLAL 960
Query: 857 SNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFSEFDFKPQ 916
+ ET+ LT +++ F+ P L R+ +MLN+ LQ L GPK LKV++ ++ F+P+
Sbjct: 961 ATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPK 1020
Query: 917 QLVSDICTIYLNLGDEENFCATVPKDGRSYSPTLFAQTVRVLKKIN-KPGNMIMAFSNLA 975
+L+ + IYL L D F + D RSYS LF + + ++K K I F LA
Sbjct: 1021 KLLDQLTDIYLQL-DCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLA 1079
Query: 976 ERIKSLADLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQT 1035
E+++ + + E Y+DA DEF DP+M TLM DPV LPS + +DRS I RHLL+ T
Sbjct: 1080 EKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPT 1138
Query: 1036 DPFNRSPLTMDQIRPNTELKEKIQRWLAERK 1066
DPFNR LT + P ELKE+IQ W+ E++
Sbjct: 1139 DPFNRQTLTESMLEPVPELKEQIQAWMREKQ 1169
>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
Length = 1302
Score = 277 bits (708), Expect = 4e-74
Identities = 246/931 (26%), Positives = 434/931 (46%), Gaps = 89/931 (9%)
Query: 170 ERHIFCYLYSCFQRAKEEITKVPENLLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIHEQL 229
E + YL CF R E K P+ AV + +SN R+ ++ V Q Q
Sbjct: 423 ETDMLNYLIECFDRVGIEEKKAPKMCSQPAV---SQLLSNIRSQCISHTALVLQGSLTQP 479
Query: 230 VDLMLEAIQGAREYMNKIYFEDVTEFLEEVIEALILDEEVRTFPEVMIPVFDILLGRIKD 289
L + + + F++E++ DEEV F ++ IP+ L K+
Sbjct: 480 RSLQQPSFLVPYMLCRNLPYG----FIQELVRTTHQDEEV--FKQIFIPILQGLALAAKE 533
Query: 290 LELCQILLYAYLDILLYFTRQKD---------MAKVFVEYIQPKDPTNGQMYQK-TLLGV 339
L L L K +A + + + P G+ Q+ + LG
Sbjct: 534 CSLDSDYFKYPLMALGELCETKFGKTHPVCNLVASLRLWLPKSLSPGCGRELQRLSYLGA 593
Query: 340 ILSISCLLKTP-GVVENHGYFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQL 398
S S + VVE YF P+ + + +V ++ ++ ++++++L ++L L
Sbjct: 594 FFSFSVFAEDDVKVVEK--YFSGPAITL-ENTRVVSQSLQHYLELGRQELFKILHSIL-L 649
Query: 399 SPETKHCILSWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCK 458
+ ET+ LS++ ++AN + ++ + ++ ++D F LN L +L
Sbjct: 650 NGETREAALSYMAAVVNANMKKAQMQTDD------RLVSTDGFMLNFLWVLQQLSTKI-- 701
Query: 459 PRSSRLLTFNPTY-----CALKELNDEERKIKNVHMRGLDKETCLI----PAVQEPKFPQ 509
+L T +PTY C + NDE R N M ++ + P EPKFP
Sbjct: 702 ----KLETVDPTYIFHPRCRITLPNDETRV--NATMEDVNDWLTELYGDQPPFSEPKFPT 755
Query: 510 NYNLVTENL----ALTEYTLYLGFHRLHDQMVKINQNLHRLQVAWRDAQQSSSPAADNLR 565
+T + L Y+ R ++ + ++L + W+D SP A R
Sbjct: 756 ECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNNESQWKD-----SPLATRHR 810
Query: 566 E-------QFERLMTIYLSTKTAMTEPQMLQNCLNLQVSMAVLLVQLAIGNEGSQPIELT 618
E Q ++L+ + + L+ CLN + LL+++ + + P ++T
Sbjct: 811 EMLKRCKTQLKKLVRCKACADAGLLDESFLRRCLNFYGLLIQLLLRIL---DPAYP-DIT 866
Query: 619 FPL-PDGYSSLAYVPEFFADNLGDFLIFLRRFADDILETSADSLEHVLHFITIFTGSIER 677
PL D A +PEF+ +++ +FL F+ +++ L + ++ F+ + +
Sbjct: 867 LPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQALYEPCT--QDIVMFLVVMLCNQNY 924
Query: 678 MKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHRKRVFCNFQYAPQLAEALIKVFVDIE 737
++NP+L AKL EV+ P + + + L +L+K + D+E
Sbjct: 925 IRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLS------TKLLVPSLMKFYTDVE 978
Query: 738 FTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKDLADYASKNLEAMNPPLFLRFLNL 797
TG +F KF R + I + +W +++A + + E + F+R++N+
Sbjct: 979 HTGATSEFYDKFTIRYHISTIFKSLW---------QNIAHHGTFMEEFNSGKQFVRYINM 1029
Query: 798 LMNDAIFLLDEAIQYLSKI-KIQQIEKDRGEWDSLTPEARREKEAGLQMFGQLARFHNIM 856
L+ND FLLDE+++ L +I ++Q+ K++ +WD L + ++ +++ L +++R + +
Sbjct: 1030 LINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLAL 1089
Query: 857 SNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFSEFDFKPQ 916
+ ET+ LT +++ F+ P L R+ +MLN+ LQ L GPK LKV++ ++ F+P+
Sbjct: 1090 ATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPK 1149
Query: 917 QLVSDICTIYLNLGDEENFCATVPKDGRSYSPTLFAQTVRVLKKIN-KPGNMIMAFSNLA 975
+L+ + IYL L D F + D RSYS LF + + ++K K I F LA
Sbjct: 1150 KLLDQLTDIYLQL-DCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLA 1208
Query: 976 ERIKSLADLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQT 1035
E+++ + + E Y+DA DEF DP+M TLM DPV LPS + +DRS I RHLL+ T
Sbjct: 1209 EKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPT 1267
Query: 1036 DPFNRSPLTMDQIRPNTELKEKIQRWLAERK 1066
DPFNR LT + P ELKE+IQ W+ E++
Sbjct: 1268 DPFNRQTLTESMLEPVPELKEQIQAWMREKQ 1298
>gi|56181387 STIP1 homology and U-box containing protein 1 [Homo
sapiens]
Length = 303
Score = 49.3 bits (116), Expect = 2e-05
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 975 AERIKSLADL-----QQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARH 1029
A+ K +AD+ Q E+ D D I LM +P + PS +T DR I H
Sbjct: 202 AKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEH 260
Query: 1030 LLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE 1064
L DP RSPLT +Q+ PN +KE I +++E
Sbjct: 261 LQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISE 296
>gi|7662344 U-box domain containing 5 isoform a [Homo sapiens]
Length = 541
Score = 41.2 bits (95), Expect = 0.005
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 986 QQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQT------DPFN 1039
Q+ E D +EFLDPI +M P++LPS +V +D+ST+ + S+ T DPF
Sbjct: 250 QKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKV-IDQSTLEKCNRSEATWGRVPSDPFT 308
Query: 1040 RSPLT-MDQIRPNTELKEKIQRWLAE 1064
T Q P+ LK +I +L +
Sbjct: 309 GVAFTPHSQPLPHPSLKARIDHFLLQ 334
>gi|40806196 U-box domain containing 5 isoform b [Homo sapiens]
Length = 487
Score = 41.2 bits (95), Expect = 0.005
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 986 QQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQT------DPFN 1039
Q+ E D +EFLDPI +M P++LPS +V +D+ST+ + S+ T DPF
Sbjct: 250 QKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKV-IDQSTLEKCNRSEATWGRVPSDPFT 308
Query: 1040 RSPLT-MDQIRPNTELKEKIQRWLAE 1064
T Q P+ LK +I +L +
Sbjct: 309 GVAFTPHSQPLPHPSLKARIDHFLLQ 334
>gi|189571685 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 35.4 bits (80), Expect = 0.29
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 978 IKSLADLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-LSDQTD 1036
++ + +L+ + + + DEF+ PI LM DPV+ S + ++ + + +T
Sbjct: 387 LRKIEELRTKVKSLSSGIPDEFICPITRELMKDPVI-ASDGYSYEKEAMENWISKKKRTS 445
Query: 1037 PFNRSPLTMDQIRPNTELKEKIQRWL 1062
P L + PN LK I RWL
Sbjct: 446 PMTNLVLPSAVLTPNRTLKMAINRWL 471
>gi|189571683 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 35.4 bits (80), Expect = 0.29
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 978 IKSLADLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-LSDQTD 1036
++ + +L+ + + + DEF+ PI LM DPV+ S + ++ + + +T
Sbjct: 387 LRKIEELRTKVKSLSSGIPDEFICPITRELMKDPVI-ASDGYSYEKEAMENWISKKKRTS 445
Query: 1037 PFNRSPLTMDQIRPNTELKEKIQRWL 1062
P L + PN LK I RWL
Sbjct: 446 PMTNLVLPSAVLTPNRTLKMAINRWL 471
>gi|189571681 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 35.4 bits (80), Expect = 0.29
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 978 IKSLADLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-LSDQTD 1036
++ + +L+ + + + DEF+ PI LM DPV+ S + ++ + + +T
Sbjct: 387 LRKIEELRTKVKSLSSGIPDEFICPITRELMKDPVI-ASDGYSYEKEAMENWISKKKRTS 445
Query: 1037 PFNRSPLTMDQIRPNTELKEKIQRWL 1062
P L + PN LK I RWL
Sbjct: 446 PMTNLVLPSAVLTPNRTLKMAINRWL 471
>gi|225579095 S-phase cyclin A-associated protein in the ER isoform b
[Homo sapiens]
Length = 1154
Score = 33.9 bits (76), Expect = 0.85
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 17/100 (17%)
Query: 324 KDPTN--GQMYQKTLLGVILSISCLLKTPGVVENHGYFLNPSRSSPQE--------IKVQ 373
+DPT + L GV+ + C+L HG L+PS +SP+E + +Q
Sbjct: 920 QDPTGLTAALQATDLAGVLHMLYCVLF-------HGTILDPSTASPKENYTQNTIQVAIQ 972
Query: 374 EANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILSWLGNC 413
A H +Q + LS +H S LG+C
Sbjct: 973 SLRFFNSFAALHLPAFQSIVGAEGLSLAFRHMASSLLGHC 1012
>gi|225579092 S-phase cyclin A-associated protein in the ER isoform a
[Homo sapiens]
Length = 1400
Score = 33.9 bits (76), Expect = 0.85
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 17/100 (17%)
Query: 324 KDPTN--GQMYQKTLLGVILSISCLLKTPGVVENHGYFLNPSRSSPQE--------IKVQ 373
+DPT + L GV+ + C+L HG L+PS +SP+E + +Q
Sbjct: 1166 QDPTGLTAALQATDLAGVLHMLYCVLF-------HGTILDPSTASPKENYTQNTIQVAIQ 1218
Query: 374 EANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILSWLGNC 413
A H +Q + LS +H S LG+C
Sbjct: 1219 SLRFFNSFAALHLPAFQSIVGAEGLSLAFRHMASSLLGHC 1258
>gi|63079709 apolipoprotein AV [Homo sapiens]
Length = 366
Score = 32.3 bits (72), Expect = 2.5
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 562 DNLREQFERLMTIYLSTKTAMTEPQMLQNCLNLQVS-------MAVLLVQLAIGNEGSQP 614
D LRE+ R + + A +PQML + ++ + + AI E +
Sbjct: 251 DQLREELSRAFAGTGTEEGAGPDPQMLSEEVRQRLQAFRQDTYLQIAAFTRAIDQETEEV 310
Query: 615 IELTFPLPDGYSSLAYVPEFFADNLGDFLIFLRRFADDILETSADSLEHVLH 666
+ P P G+S A+ PEF + G L L+ DD+ E SL H
Sbjct: 311 QQQLAPPPPGHS--AFAPEFQQTDSGKVLSKLQARLDDLWEDITHSLHDQGH 360
>gi|93102424 hypothetical protein LOC23116 [Homo sapiens]
Length = 1720
Score = 32.3 bits (72), Expect = 2.5
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 679 KNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHRKRVFCNFQYAPQLAEALIKVFVDIEF 738
KNP + A V++A+ H+D N L+ F K F N + + E L + ++ +
Sbjct: 1584 KNPGIYAAATNVVQALSQHVD---NYLLLQPFCTKAQFLNGKAKQDMTEKLADIVTEL-Y 1639
Query: 739 TGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKDLADYASKNLEAMNPPLFLRFLNLL 798
PH EQK + +L ++ G T S+ ++ LF + L
Sbjct: 1640 QRKPHATEQK------VLVVLWHLLGNMTNSGSLPGAGGNIRTATAKLSKALFAQMGQNL 1693
Query: 799 MNDA 802
+N A
Sbjct: 1694 LNQA 1697
>gi|156104908 myosin heavy chain 6 [Homo sapiens]
Length = 1939
Score = 32.0 bits (71), Expect = 3.2
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 31 IQKEQLKQQSDELPASPDDSDNSVSESLDEFDYSVAEISRSFRSQQEICEQLNINHMIQR 90
++K +L+ +E AS + + + + EF+ AEI R + E EQ NH QR
Sbjct: 1537 VEKLELQSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKLAEKDEEMEQAKRNH--QR 1594
Query: 91 IFLITLDNSDPSLKSGNGIPSRCVYLE----EMAVELEDQDWLDMSNVEQALFARLLLQD 146
+ + D +S N + +E EM ++L + + +Q + LL+D
Sbjct: 1595 VVDSLQTSLDAETRSRNEVLRVKKKMEGDLNEMEIQLSHANRMAAEAQKQVKSLQSLLKD 1654
>gi|82546832 SEC8 protein isoform b [Homo sapiens]
Length = 473
Score = 30.8 bits (68), Expect = 7.2
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 887 MLNYFLQHLVGP--KMGALKVKDFSEFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGR 944
+L Y +V P + +K+ D ++ K Q ++ + T YL++ + A+ P
Sbjct: 359 VLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRT--ASEPSAQL 416
Query: 945 SYSPT------LFAQTVRVLKKINKPGNMIMAFSNLAERIKSLADLQQQEEETYA 993
SY+ T FA+ KK +P N + F + + I A L++Q E Y+
Sbjct: 417 SYASTGREFAAFFAK-----KKPQRPKNSLFKFESSSHAISMSAYLREQRRELYS 466
>gi|82546830 SEC8 protein isoform a [Homo sapiens]
Length = 974
Score = 30.8 bits (68), Expect = 7.2
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 887 MLNYFLQHLVGP--KMGALKVKDFSEFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGR 944
+L Y +V P + +K+ D ++ K Q ++ + T YL++ + A+ P
Sbjct: 359 VLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRT--ASEPSAQL 416
Query: 945 SYSPT------LFAQTVRVLKKINKPGNMIMAFSNLAERIKSLADLQQQEEETYA 993
SY+ T FA+ KK +P N + F + + I A L++Q E Y+
Sbjct: 417 SYASTGREFAAFFAK-----KKPQRPKNSLFKFESSSHAISMSAYLREQRRELYS 466
>gi|7657381 PRP19/PSO4 pre-mRNA processing factor 19 homolog [Homo
sapiens]
Length = 504
Score = 30.8 bits (68), Expect = 7.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 1011 PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 1048
P V P S +R I +++ + TDP N PL+ +Q+
Sbjct: 15 PCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQL 52
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 30.4 bits (67), Expect = 9.4
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 26 KQFAAIQKEQLKQQSDELPASPDDSDNSVSESLDEFDYSVAEISRSFRSQQEICEQLNIN 85
KQ A +K +L+ +E AS + + + + EF+ AEI R + E EQ N
Sbjct: 1531 KQLEA-EKMELQSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKLAEKDEEMEQAKRN 1589
Query: 86 HM 87
H+
Sbjct: 1590 HL 1591
>gi|62244004 modulator of estrogen induced transcription isoform b
[Homo sapiens]
Length = 1016
Score = 30.4 bits (67), Expect = 9.4
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 22 LADAKQFAAIQKEQLKQQSDELPASPDDS----------DNSVSESLDEFDYSVAEISRS 71
L +A+ I+KE ++ Q E DD+ +N SL E D++ E +
Sbjct: 154 LIEAEGIEDIEKEDIESQEIEAQEGEDDTFLTAQDGEEEENEKEGSLAEADHTAHEEMEA 213
Query: 72 FRSQQEICEQLNINHMIQRIFLITLD-NSDPSLKSGNGI 109
+ +E E NI+ IQ ITLD + D L++G +
Sbjct: 214 HTTVKE-AEDDNISVTIQAEDAITLDFDGDDLLETGKNV 251
>gi|212549557 zinc finger protein 860 [Homo sapiens]
Length = 632
Score = 30.4 bits (67), Expect = 9.4
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 106 GNGIPSRCVYLEEMAVELEDQDWLDMSNVEQALFARLLLQDPGN-HLINMTS-------S 157
G +P + ++A+E ++W + ++AL+ ++L++ N H ++++S S
Sbjct: 16 GMALPQGHLTFRDVAIEFSLEEWKCLDPTQRALYRAMMLENYRNLHSVDISSKCMMKKFS 75
Query: 158 TTLNLSADRDAG--ERHIFCYLYS-CFQRAKEEI 188
+T + + D G ERH ++ CFQ+ ++I
Sbjct: 76 STAQGNTEVDTGTLERHESHHIGDFCFQKIGKDI 109
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,614,913
Number of Sequences: 37866
Number of extensions: 1663613
Number of successful extensions: 4824
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4794
Number of HSP's gapped (non-prelim): 27
length of query: 1073
length of database: 18,247,518
effective HSP length: 113
effective length of query: 960
effective length of database: 13,968,660
effective search space: 13409913600
effective search space used: 13409913600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.