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Search of human proteins with 38093659
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38093659 transmembrane protein 173 [Homo sapiens]
(379 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38093659 transmembrane protein 173 [Homo sapiens] 764 0.0
gi|45269149 quinolinate phosphoribosyltransferase [Homo sapiens] 32 0.94
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 30 2.7
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 30 2.7
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 30 3.6
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens] 30 3.6
gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens] 30 3.6
gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens] 30 3.6
gi|148747864 JAW1-related protein isoform a [Homo sapiens] 30 3.6
gi|154091334 JAW1-related protein isoform c [Homo sapiens] 30 3.6
gi|154091332 JAW1-related protein isoform b [Homo sapiens] 30 3.6
gi|148728182 JAW1-related protein isoform b [Homo sapiens] 30 3.6
gi|62988334 cation channel, sperm associated 4 [Homo sapiens] 30 3.6
gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens] 30 3.6
gi|56550043 sarcolemma associated protein [Homo sapiens] 30 3.6
gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens] 30 3.6
gi|83367077 mucin 16 [Homo sapiens] 29 8.0
>gi|38093659 transmembrane protein 173 [Homo sapiens]
Length = 379
Score = 764 bits (1973), Expect = 0.0
Identities = 379/379 (100%), Positives = 379/379 (100%)
Query: 1 MPHSSLHPSIPCPRGHGAQKAALVLLSACLVTLWGLGEPPEHTLRYLVLHLASLQLGLLL 60
MPHSSLHPSIPCPRGHGAQKAALVLLSACLVTLWGLGEPPEHTLRYLVLHLASLQLGLLL
Sbjct: 1 MPHSSLHPSIPCPRGHGAQKAALVLLSACLVTLWGLGEPPEHTLRYLVLHLASLQLGLLL 60
Query: 61 NGVCSLAEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWM 120
NGVCSLAEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWM
Sbjct: 61 NGVCSLAEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWM 120
Query: 121 LALLGLSQALNILLGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQARIR 180
LALLGLSQALNILLGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQARIR
Sbjct: 121 LALLGLSQALNILLGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQARIR 180
Query: 181 TYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVY 240
TYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVY
Sbjct: 181 TYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVY 240
Query: 241 SNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILA 300
SNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILA
Sbjct: 241 SNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILA 300
Query: 301 DAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQE 360
DAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQE
Sbjct: 301 DAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQE 360
Query: 361 PELLISGMEKPLPLRTDFS 379
PELLISGMEKPLPLRTDFS
Sbjct: 361 PELLISGMEKPLPLRTDFS 379
>gi|45269149 quinolinate phosphoribosyltransferase [Homo sapiens]
Length = 297
Score = 32.0 bits (71), Expect = 0.94
Identities = 50/188 (26%), Positives = 73/188 (38%), Gaps = 27/188 (14%)
Query: 123 LLGLSQALNILLGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQARIRTY 182
LLG ALN L G+A A +AV A G W+ ++ R P +
Sbjct: 98 LLGERVALNTLARCSGIASAAAAAV------EAARGAGWTGHVAGTRKTTPGFR-----L 146
Query: 183 NQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVYSN 242
+ Y L+ GA S R Y L L V DN +A + + +Q D A +K V +
Sbjct: 147 VEKYGLLVGGAASHR-YDLGGL-VMVKDNHVVAAGGVEKAVRAARQAADFA-LKVEVECS 203
Query: 243 SIYELLENGQRAGTCVL----------EYATPLQTLFAMSQYSQAGFSREDRLEQAKLFC 292
S+ E ++ + VL AT L+ F +G D L Q FC
Sbjct: 204 SLQEAVQAAEAGADLVLLDNFKPEELHPTATVLKAQFPSVAVEASGGITLDNLPQ---FC 260
Query: 293 RTLEDILA 300
D+++
Sbjct: 261 GPHIDVIS 268
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 30.4 bits (67), Expect = 2.7
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 285 LEQAKLFCRTLEDILADAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLR--QEEKEEVT 342
L+Q +LF ++ +P S N +L + D+ +S RH R QEE EE+
Sbjct: 99 LKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELL 158
Query: 343 VGSLKTSAV 351
S KTS V
Sbjct: 159 SESRKTSNV 167
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 30.4 bits (67), Expect = 2.7
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 285 LEQAKLFCRTLEDILADAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLR--QEEKEEVT 342
L+Q +LF ++ +P S N +L + D+ +S RH R QEE EE+
Sbjct: 99 LKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELL 158
Query: 343 VGSLKTSAV 351
S KTS V
Sbjct: 159 SESRKTSNV 167
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 30.0 bits (66), Expect = 3.6
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 304 ESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQEPE 362
E QN R QEP + + Q LR R+EE TVGS + V QEPE
Sbjct: 163 ELQNRLRRKREQEPTERPLKGI-QSRLRKKRREEGPAETVGSEASDTVEGVLPSKQEPE 220
>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
Length = 1189
Score = 30.0 bits (66), Expect = 3.6
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 304 ESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQEPE 362
E QN R QEP + + Q LR R+EE TVGS + V QEPE
Sbjct: 163 ELQNRLRRKREQEPTERPLKGI-QSRLRKKRREEGPAETVGSEASDTVEGVLPSKQEPE 220
>gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens]
Length = 562
Score = 30.0 bits (66), Expect = 3.6
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 304 ESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQEPE 362
E QN R QEP + + Q LR R+EE TVGS + V QEPE
Sbjct: 163 ELQNRLRRKREQEPTERPLKGI-QSRLRKKRREEGPAETVGSEASDTVEGVLPSKQEPE 220
>gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens]
Length = 562
Score = 30.0 bits (66), Expect = 3.6
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 304 ESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQEPE 362
E QN R QEP + + Q LR R+EE TVGS + V QEPE
Sbjct: 163 ELQNRLRRKREQEPTERPLKGI-QSRLRKKRREEGPAETVGSEASDTVEGVLPSKQEPE 220
>gi|148747864 JAW1-related protein isoform a [Homo sapiens]
Length = 903
Score = 30.0 bits (66), Expect = 3.6
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Query: 211 NLSMADPNIRFLDKLPQQTGDHAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFA 270
NL P+ + LP + G ++++ LLENG+ G E + P TL
Sbjct: 699 NLPGQTPSSSSIPSLPALSESPNGKGSLPVTSALPALLENGKTNGDPDCEASAPALTLSC 758
Query: 271 MSQYSQAGFSREDRLEQAKLFCRTLEDI--LADAPESQNNCRLIAYQEPADDSSFSLSQE 328
+ + SQ +R + +K F L+ L D E + + + +EP + ++
Sbjct: 759 LEELSQETKARMEEEAYSKGFQEGLKKTKELQDLKEEEEEQKSESPEEPEEVEETEEEEK 818
Query: 329 VLRHLRQEE 337
R + EE
Sbjct: 819 GPRSSKLEE 827
>gi|154091334 JAW1-related protein isoform c [Homo sapiens]
Length = 597
Score = 30.0 bits (66), Expect = 3.6
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Query: 211 NLSMADPNIRFLDKLPQQTGDHAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFA 270
NL P+ + LP + G ++++ LLENG+ G E + P TL
Sbjct: 393 NLPGQTPSSSSIPSLPALSESPNGKGSLPVTSALPALLENGKTNGDPDCEASAPALTLSC 452
Query: 271 MSQYSQAGFSREDRLEQAKLFCRTLEDI--LADAPESQNNCRLIAYQEPADDSSFSLSQE 328
+ + SQ +R + +K F L+ L D E + + + +EP + ++
Sbjct: 453 LEELSQETKARMEEEAYSKGFQEGLKKTKELQDLKEEEEEQKSESPEEPEEVEETEEEEK 512
Query: 329 VLRHLRQEE 337
R + EE
Sbjct: 513 GPRSSKLEE 521
>gi|154091332 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 30.0 bits (66), Expect = 3.6
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Query: 211 NLSMADPNIRFLDKLPQQTGDHAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFA 270
NL P+ + LP + G ++++ LLENG+ G E + P TL
Sbjct: 617 NLPGQTPSSSSIPSLPALSESPNGKGSLPVTSALPALLENGKTNGDPDCEASAPALTLSC 676
Query: 271 MSQYSQAGFSREDRLEQAKLFCRTLEDI--LADAPESQNNCRLIAYQEPADDSSFSLSQE 328
+ + SQ +R + +K F L+ L D E + + + +EP + ++
Sbjct: 677 LEELSQETKARMEEEAYSKGFQEGLKKTKELQDLKEEEEEQKSESPEEPEEVEETEEEEK 736
Query: 329 VLRHLRQEE 337
R + EE
Sbjct: 737 GPRSSKLEE 745
>gi|148728182 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 30.0 bits (66), Expect = 3.6
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Query: 211 NLSMADPNIRFLDKLPQQTGDHAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFA 270
NL P+ + LP + G ++++ LLENG+ G E + P TL
Sbjct: 617 NLPGQTPSSSSIPSLPALSESPNGKGSLPVTSALPALLENGKTNGDPDCEASAPALTLSC 676
Query: 271 MSQYSQAGFSREDRLEQAKLFCRTLEDI--LADAPESQNNCRLIAYQEPADDSSFSLSQE 328
+ + SQ +R + +K F L+ L D E + + + +EP + ++
Sbjct: 677 LEELSQETKARMEEEAYSKGFQEGLKKTKELQDLKEEEEEQKSESPEEPEEVEETEEEEK 736
Query: 329 VLRHLRQEE 337
R + EE
Sbjct: 737 GPRSSKLEE 745
>gi|62988334 cation channel, sperm associated 4 [Homo sapiens]
Length = 472
Score = 30.0 bits (66), Expect = 3.6
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 291 FCRTLEDILADAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEKEEV------TVG 344
FC LE I Q N R Y+E D+ + + + QE++ EV T G
Sbjct: 377 FCLVLEAI-------QENLR--QYKEIRDELNMIVEEVRAIRFNQEQESEVLNRRSSTSG 427
Query: 345 SLKTSAVPSTSTMSQEPELL--ISGMEK 370
SL+T++ MSQ+ +LL + MEK
Sbjct: 428 SLETTSSKDIRQMSQQQDLLSALVSMEK 455
>gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]
Length = 4363
Score = 30.0 bits (66), Expect = 3.6
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 341 VTVGSLKTSAVPSTSTMSQEPELLIS-GMEKPLP 373
+++GSLK+ VPSTST Q P+ +S G E P
Sbjct: 2113 MSLGSLKSEFVPSTSTKQQGPQPTLSVGQESSSP 2146
>gi|56550043 sarcolemma associated protein [Homo sapiens]
Length = 811
Score = 30.0 bits (66), Expect = 3.6
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 266 QTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLIAYQEPADDSSFSL 325
Q LF +SQY Q RE LEQ TL+ +LA E+ + ++Q D+
Sbjct: 163 QELFQLSQYLQEALHREQMLEQK---LATLQRLLAITQEASDT----SWQALIDEDRLLS 215
Query: 326 SQEVLRHLRQEEKEEVTVGSLKTSAV 351
EV+ + Q + T SL+ +
Sbjct: 216 RLEVMGNQLQACSKNQTEDSLRKELI 241
>gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]
Length = 4388
Score = 30.0 bits (66), Expect = 3.6
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 341 VTVGSLKTSAVPSTSTMSQEPELLIS-GMEKPLP 373
+++GSLK+ VPSTST Q P+ +S G E P
Sbjct: 2113 MSLGSLKSEFVPSTSTKQQGPQPTLSVGQESSSP 2146
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 28.9 bits (63), Expect = 8.0
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 313 AYQEPADDSSFSLSQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQEPELLISGMEKPL 372
AYQ P+ + + + ++ H+ + E G+++ P TST P+ L +G K +
Sbjct: 10413 AYQVPSLSTRLTRTDGIMEHITKIPNEAAHRGTIRPVKGPQTSTSPASPKGLHTGGTKRM 10472
Query: 373 PLRT 376
T
Sbjct: 10473 ETTT 10476
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,400,580
Number of Sequences: 37866
Number of extensions: 697584
Number of successful extensions: 1758
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1751
Number of HSP's gapped (non-prelim): 20
length of query: 379
length of database: 18,247,518
effective HSP length: 104
effective length of query: 275
effective length of database: 14,309,454
effective search space: 3935099850
effective search space used: 3935099850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.