Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MOBP Sequence: fasta or formatted (81aa) NCBI GI: 33636771
Description:

myelin-associated oligodendrocyte basic protein

Referenced in:

Oligodendrocytes and Myelin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          2           1
 C cysteine            8.6          7           2
 D aspartate           2.5          2           1
 E glutamate           6.2          5           2
 F phenylalanine       4.9          4           1
 G glycine             2.5          2           1
 H histidine           2.5          2           1
 I isoleucine          6.2          5           1
 K lysine             19.8         16           3
 L leucine             3.7          3           1
 M methionine          1.2          1           1
 N asparagine          2.5          2           1
 P proline             7.4          6           2
 Q glutamine           4.9          4           1
 R arginine            6.2          5           1
 S serine              8.6          7           1
 T threonine           3.7          3           1
 V valine              1.2          1           1
 W tryptophan          1.2          1           1
 Y tyrosine            3.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myelin-associated oligodendrocyte basic protein [Hom... 
MYRIP                 0.364   myosin VIIA and Rab interacting protein 
MLPH                  0.052   melanophilin isoform 2 
MLPH                  0.052   melanophilin isoform 1 
HYDIN                 0.019   hydrocephalus inducing isoform a 
LOC100290207          0.019   PREDICTED: hypothetical protein XP_002348308, parti...
RFPL1                 0.019   ret finger protein-like 1 
C16orf11              0.019   hypothetical protein LOC146325 
LOC100291900          0.013   PREDICTED: similar to hCG2006635, partial 
LOC100288291          0.013   PREDICTED: hypothetical protein XP_002344174 
CIAO1                 0.013   WD repeat domain 39 
RFPL3                 0.013   ret finger protein-like 3 isoform 1 
RFPL3                 0.013   ret finger protein-like 3 isoform 2 
TRIM39                0.006   tripartite motif-containing 39 isoform 2 
TRIM39                0.006   tripartite motif-containing 39 isoform 1 
DGKE                  0.006   diacylglycerol kinase epsilon 
USH2A                 0.006   usherin isoform B 
USH2A                 0.006   usherin isoform A 
LOC728927             0.006   PREDICTED: similar to hCG40110 
LOC728927             0.006   PREDICTED: similar to hCG40110 
LOC728927             0.006   PREDICTED: hypothetical protein LOC728927 
LOC728927             0.006   PREDICTED: similar to hCG40110 
EYS                   0.006   eyes shut homolog isoform 2 
EYS                   0.006   eyes shut homolog isoform 1 
EYS                   0.006   eyes shut homolog isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press