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Search of human proteins with 33188463
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33188463 mitochondrial ribosomal protein S9 [Homo sapiens]
(396 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33188463 mitochondrial ribosomal protein S9 [Homo sapiens] 800 0.0
gi|4506691 ribosomal protein S16 [Homo sapiens] 52 7e-07
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 37 0.041
gi|79749430 FRAS1-related extracellular matrix protein 2 precurs... 33 0.45
gi|22095393 zinc finger protein 420 [Homo sapiens] 31 1.7
gi|32967514 neurofibromin 2 isoform 7 [Homo sapiens] 30 2.9
gi|32967254 neurofibromin 2 isoform 2 [Homo sapiens] 30 2.9
gi|32967266 neurofibromin 2 isoform 2 [Homo sapiens] 30 2.9
gi|32967264 neurofibromin 2 isoform 7 [Homo sapiens] 30 2.9
gi|32967262 neurofibromin 2 isoform 6 [Homo sapiens] 30 2.9
gi|32967260 neurofibromin 2 isoform 5 [Homo sapiens] 30 2.9
gi|32451486 neurofibromin 2 isoform 2 [Homo sapiens] 30 2.9
gi|4557795 neurofibromin 2 isoform 1 [Homo sapiens] 30 2.9
gi|16262452 cingulin [Homo sapiens] 30 2.9
gi|7656959 calpain 7 [Homo sapiens] 30 2.9
gi|42718020 retinitis pigmentosa 9 [Homo sapiens] 30 5.0
gi|51944950 phosducin-like 2 [Homo sapiens] 29 6.5
gi|78000213 DNA methyltransferase 1 associated protein 1 [Homo s... 29 8.5
gi|78000211 DNA methyltransferase 1 associated protein 1 [Homo s... 29 8.5
gi|13123776 DNA methyltransferase 1 associated protein 1 [Homo s... 29 8.5
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 29 8.5
>gi|33188463 mitochondrial ribosomal protein S9 [Homo sapiens]
Length = 396
Score = 800 bits (2066), Expect = 0.0
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 1 MAAPCVSYGGAVSYRLLLWGRGSLARKQGLWKTAAPELQTNVRSQILRLRHTAFVIPKKN 60
MAAPCVSYGGAVSYRLLLWGRGSLARKQGLWKTAAPELQTNVRSQILRLRHTAFVIPKKN
Sbjct: 1 MAAPCVSYGGAVSYRLLLWGRGSLARKQGLWKTAAPELQTNVRSQILRLRHTAFVIPKKN 60
Query: 61 VPTSKRETYTEDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEKR 120
VPTSKRETYTEDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEKR
Sbjct: 61 VPTSKRETYTEDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEKR 120
Query: 121 ARPVMKHPEQIFPRQRAIQWGEDGRPFHYLFYTGKQSYYSLMHDVYGMLLNLEKHQSHLQ 180
ARPVMKHPEQIFPRQRAIQWGEDGRPFHYLFYTGKQSYYSLMHDVYGMLLNLEKHQSHLQ
Sbjct: 121 ARPVMKHPEQIFPRQRAIQWGEDGRPFHYLFYTGKQSYYSLMHDVYGMLLNLEKHQSHLQ 180
Query: 181 AKSLLPEKTVTRDVIGSRWLIKEELEEMLVEKLSDLDYMQFIRLLEKLLTSQCGAAEEEF 240
AKSLLPEKTVTRDVIGSRWLIKEELEEMLVEKLSDLDYMQFIRLLEKLLTSQCGAAEEEF
Sbjct: 181 AKSLLPEKTVTRDVIGSRWLIKEELEEMLVEKLSDLDYMQFIRLLEKLLTSQCGAAEEEF 240
Query: 241 VQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKTAKAEAIVYKHGSGRIKVNGIDY 300
VQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKTAKAEAIVYKHGSGRIKVNGIDY
Sbjct: 241 VQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKTAKAEAIVYKHGSGRIKVNGIDY 300
Query: 301 QLYFPITQDREQLMFPFHFVDRLGKHDVTCTVSGGGRSAQAGAIRLAMAKALCSFVTEDE 360
QLYFPITQDREQLMFPFHFVDRLGKHDVTCTVSGGGRSAQAGAIRLAMAKALCSFVTEDE
Sbjct: 301 QLYFPITQDREQLMFPFHFVDRLGKHDVTCTVSGGGRSAQAGAIRLAMAKALCSFVTEDE 360
Query: 361 VEWMRQAGLLTTDPRVRERKKPGQEGARRKFTWKKR 396
VEWMRQAGLLTTDPRVRERKKPGQEGARRKFTWKKR
Sbjct: 361 VEWMRQAGLLTTDPRVRERKKPGQEGARRKFTWKKR 396
>gi|4506691 ribosomal protein S16 [Homo sapiens]
Length = 146
Score = 52.4 bits (124), Expect = 7e-07
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFPITQDREQLMFPFHFV--DRLGKHDVTCT 331
G++KTA A A K G+G IKVNG ++ P T + +L+ P + +R D+
Sbjct: 14 GRKKTATAVAHC-KRGNGLIKVNGRPLEMIEPRTL-QYKLLEPVLLLGKERFAGVDIRVR 71
Query: 332 VSGGGRSAQAGAIRLAMAKALCSFVTE----------DEVEWMRQAGLLTTDPRVRERKK 381
V GGG AQ AIR +++KAL ++ + ++ LL DPR E KK
Sbjct: 72 VKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKK 131
Query: 382 PGQEGARRKF 391
G GAR ++
Sbjct: 132 FGGPGARARY 141
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 36.6 bits (83), Expect = 0.041
Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 202 KEELEEMLVEKLSDLDYMQFIRLLEKL-LTSQCGAAEE--EFVQRFRRSVTLESKKQLIE 258
KE L+E L E+L +L+ ++ + + EK L +Q A+ E +++ + V E+K+Q+ E
Sbjct: 316 KEALQEQLDERLQELEKIKDLHMAEKTKLITQLRDAKNLIEQLEQDKGMVIAETKRQMHE 375
Query: 259 PVQYDEQGMAFSKSEGKRKTAKAEAI 284
++ E+ +A +S K+ T + E +
Sbjct: 376 TLEMKEEEIAQLRSRIKQMTTQGEEL 401
>gi|79749430 FRAS1-related extracellular matrix protein 2 precursor
[Homo sapiens]
Length = 3169
Score = 33.1 bits (74), Expect = 0.45
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 73 FIKKQIEEFNIGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEKRARPVMK 126
F K+ + E I +H ED +FT D Y+FP +FE R VMK
Sbjct: 1592 FTKQDLNENLISYKHDGTESSEDSFSFTVTDGTHTDFYVFPDTVFETRRPQVMK 1645
>gi|22095393 zinc finger protein 420 [Homo sapiens]
Length = 688
Score = 31.2 bits (69), Expect = 1.7
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 158 YYSLMHDVYGMLLNLEKHQSHLQAKSLLPEKTVTRDVIGSRWLIKEELEEMLVEKLSDLD 217
Y +M + Y L++L+ S +K L PEK T + S+W + + LE +E+ + D
Sbjct: 31 YRDVMLENYSNLVSLDL-PSRCASKDLSPEKN-TYETELSQWEMSDRLENCDLEESNSRD 88
Query: 218 YMQFIRLLEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPVQYDEQ 265
Y++ +EK +E + FR+ + + K + Y Q
Sbjct: 89 YLEAKGKMEK--------QQENQKEYFRQGMIIYDKMSIFNQHTYLSQ 128
>gi|32967514 neurofibromin 2 isoform 7 [Homo sapiens]
Length = 507
Score = 30.4 bits (67), Expect = 2.9
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 173 EKHQSHLQAKSLLPEKTV------TRDVIGSRWL-IKEELEE-----MLVEKLSDL--DY 218
EK + ++ + L EK + TRD + R L +KEE M E+ +DL +
Sbjct: 245 EKARKQMERQRLAREKQMREEAERTRDELERRLLQMKEEATMANEALMRSEETADLLAEK 304
Query: 219 MQFIRLLEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKT 278
Q KLL + AE+E + ++ E +K+L+E + + +A +E +
Sbjct: 305 AQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKRLMEQKVLEAEVLALKMAEESERR 364
Query: 279 AK 280
AK
Sbjct: 365 AK 366
>gi|32967254 neurofibromin 2 isoform 2 [Homo sapiens]
Length = 590
Score = 30.4 bits (67), Expect = 2.9
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 173 EKHQSHLQAKSLLPEKTV------TRDVIGSRWL-IKEELEE-----MLVEKLSDL--DY 218
EK + ++ + L EK + TRD + R L +KEE M E+ +DL +
Sbjct: 328 EKARKQMERQRLAREKQMREEAERTRDELERRLLQMKEEATMANEALMRSEETADLLAEK 387
Query: 219 MQFIRLLEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKT 278
Q KLL + AE+E + ++ E +K+L+E + + +A +E +
Sbjct: 388 AQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKRLMEQKVLEAEVLALKMAEESERR 447
Query: 279 AK 280
AK
Sbjct: 448 AK 449
>gi|32967266 neurofibromin 2 isoform 2 [Homo sapiens]
Length = 590
Score = 30.4 bits (67), Expect = 2.9
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 173 EKHQSHLQAKSLLPEKTV------TRDVIGSRWL-IKEELEE-----MLVEKLSDL--DY 218
EK + ++ + L EK + TRD + R L +KEE M E+ +DL +
Sbjct: 328 EKARKQMERQRLAREKQMREEAERTRDELERRLLQMKEEATMANEALMRSEETADLLAEK 387
Query: 219 MQFIRLLEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKT 278
Q KLL + AE+E + ++ E +K+L+E + + +A +E +
Sbjct: 388 AQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKRLMEQKVLEAEVLALKMAEESERR 447
Query: 279 AK 280
AK
Sbjct: 448 AK 449
>gi|32967264 neurofibromin 2 isoform 7 [Homo sapiens]
Length = 507
Score = 30.4 bits (67), Expect = 2.9
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 173 EKHQSHLQAKSLLPEKTV------TRDVIGSRWL-IKEELEE-----MLVEKLSDL--DY 218
EK + ++ + L EK + TRD + R L +KEE M E+ +DL +
Sbjct: 245 EKARKQMERQRLAREKQMREEAERTRDELERRLLQMKEEATMANEALMRSEETADLLAEK 304
Query: 219 MQFIRLLEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKT 278
Q KLL + AE+E + ++ E +K+L+E + + +A +E +
Sbjct: 305 AQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKRLMEQKVLEAEVLALKMAEESERR 364
Query: 279 AK 280
AK
Sbjct: 365 AK 366
>gi|32967262 neurofibromin 2 isoform 6 [Homo sapiens]
Length = 549
Score = 30.4 bits (67), Expect = 2.9
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 173 EKHQSHLQAKSLLPEKTV------TRDVIGSRWL-IKEELEE-----MLVEKLSDL--DY 218
EK + ++ + L EK + TRD + R L +KEE M E+ +DL +
Sbjct: 287 EKARKQMERQRLAREKQMREEAERTRDELERRLLQMKEEATMANEALMRSEETADLLAEK 346
Query: 219 MQFIRLLEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKT 278
Q KLL + AE+E + ++ E +K+L+E + + +A +E +
Sbjct: 347 AQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKRLMEQKVLEAEVLALKMAEESERR 406
Query: 279 AK 280
AK
Sbjct: 407 AK 408
>gi|32967260 neurofibromin 2 isoform 5 [Homo sapiens]
Length = 548
Score = 30.4 bits (67), Expect = 2.9
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 173 EKHQSHLQAKSLLPEKTV------TRDVIGSRWL-IKEELEE-----MLVEKLSDL--DY 218
EK + ++ + L EK + TRD + R L +KEE M E+ +DL +
Sbjct: 286 EKARKQMERQRLAREKQMREEAERTRDELERRLLQMKEEATMANEALMRSEETADLLAEK 345
Query: 219 MQFIRLLEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKT 278
Q KLL + AE+E + ++ E +K+L+E + + +A +E +
Sbjct: 346 AQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKRLMEQKVLEAEVLALKMAEESERR 405
Query: 279 AK 280
AK
Sbjct: 406 AK 407
>gi|32451486 neurofibromin 2 isoform 2 [Homo sapiens]
Length = 590
Score = 30.4 bits (67), Expect = 2.9
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 173 EKHQSHLQAKSLLPEKTV------TRDVIGSRWL-IKEELEE-----MLVEKLSDL--DY 218
EK + ++ + L EK + TRD + R L +KEE M E+ +DL +
Sbjct: 328 EKARKQMERQRLAREKQMREEAERTRDELERRLLQMKEEATMANEALMRSEETADLLAEK 387
Query: 219 MQFIRLLEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKT 278
Q KLL + AE+E + ++ E +K+L+E + + +A +E +
Sbjct: 388 AQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKRLMEQKVLEAEVLALKMAEESERR 447
Query: 279 AK 280
AK
Sbjct: 448 AK 449
>gi|4557795 neurofibromin 2 isoform 1 [Homo sapiens]
Length = 595
Score = 30.4 bits (67), Expect = 2.9
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 173 EKHQSHLQAKSLLPEKTV------TRDVIGSRWL-IKEELEE-----MLVEKLSDL--DY 218
EK + ++ + L EK + TRD + R L +KEE M E+ +DL +
Sbjct: 328 EKARKQMERQRLAREKQMREEAERTRDELERRLLQMKEEATMANEALMRSEETADLLAEK 387
Query: 219 MQFIRLLEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKT 278
Q KLL + AE+E + ++ E +K+L+E + + +A +E +
Sbjct: 388 AQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEEEKRLMEQKVLEAEVLALKMAEESERR 447
Query: 279 AK 280
AK
Sbjct: 448 AK 449
>gi|16262452 cingulin [Homo sapiens]
Length = 1203
Score = 30.4 bits (67), Expect = 2.9
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 32/170 (18%)
Query: 116 LFEKRARPVMKHPEQIFPRQRAIQWGEDGRPFHYLFYTGKQSYYSLMHDVYGMLLNLEKH 175
L E+R + +++ +R + GED L H + ++ L+
Sbjct: 409 LLERRKGEAQQSNKELQNMKRLLDQGED-----------------LRHGLETQVMELQNK 451
Query: 176 QSHLQAKSLLPEKTVTRDVIGSRWLIKEELE-EMLVEKLSDLDYMQFIRLLEKLLTSQCG 234
H+Q E + +D++ +R L++E LE + VE+ +RL E+ LT+ G
Sbjct: 452 LKHVQGPEPAKE-VLLKDLLETRELLEEVLEGKQRVEEQ--------LRLRERELTALKG 502
Query: 235 AAEEEFVQRFR-----RSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKTA 279
A +EE R + R +QL +Q Q A ++E ++ +A
Sbjct: 503 ALKEEVASRDQEVEHVRQQYQRDTEQLRRSMQDATQDHAVLEAERQKMSA 552
>gi|7656959 calpain 7 [Homo sapiens]
Length = 813
Score = 30.4 bits (67), Expect = 2.9
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 17/78 (21%)
Query: 250 LESKKQLIEPVQYDEQGMAFSKSEGK--RKTAKAEAIVYKHGSGRIKVNGIDYQLYFPIT 307
LE + I P D QG ++ E + R T+K +NGI+Y + +
Sbjct: 185 LERPQSFISPQSCDAQGQRYTAEEIEVLRTTSK--------------INGIEYVPFMNVD 230
Query: 308 QDREQLMFPFHFVDRLGK 325
RE+ +P F DR GK
Sbjct: 231 L-RERFAYPMPFCDRWGK 247
>gi|42718020 retinitis pigmentosa 9 [Homo sapiens]
Length = 221
Score = 29.6 bits (65), Expect = 5.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 242 QRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKTAK 280
+R + V ++ KQL+E DE + S SEGK K K
Sbjct: 149 KRHEKDVRIQQLKQLLEDSTSDEDRSSSSSSEGKEKHKK 187
>gi|51944950 phosducin-like 2 [Homo sapiens]
Length = 241
Score = 29.3 bits (64), Expect = 6.5
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 202 KEELEEMLVEKLSDLDYMQFIRLLEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIE 258
K+E+EEM++ L ++ EK+ +Q AE+EF + ++V KK+L E
Sbjct: 27 KDEIEEMVLR----LQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQE 79
>gi|78000213 DNA methyltransferase 1 associated protein 1 [Homo
sapiens]
Length = 467
Score = 28.9 bits (63), Expect = 8.5
Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 206 EEMLVEKLSDLDYMQFIRL-----LEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPV 260
EE L+++L ++ + R L+KL+T+ AE+ +R L KK+ +P
Sbjct: 244 EEYLLQELRKIEARKKEREKRSQDLQKLITAADTTAEQRRTERKAPKKKLPQKKEAEKPA 303
Query: 261 QYDEQGMAFSKSEGKRKTAKAEAIVYKHGSGRIKVNGIDYQL 302
+ G+ F + T +++ + G+ K+ ++ L
Sbjct: 304 VPETAGIKFPDFKSAGVTLRSQRMKLPSSVGQKKIKALEQML 345
>gi|78000211 DNA methyltransferase 1 associated protein 1 [Homo
sapiens]
Length = 467
Score = 28.9 bits (63), Expect = 8.5
Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 206 EEMLVEKLSDLDYMQFIRL-----LEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPV 260
EE L+++L ++ + R L+KL+T+ AE+ +R L KK+ +P
Sbjct: 244 EEYLLQELRKIEARKKEREKRSQDLQKLITAADTTAEQRRTERKAPKKKLPQKKEAEKPA 303
Query: 261 QYDEQGMAFSKSEGKRKTAKAEAIVYKHGSGRIKVNGIDYQL 302
+ G+ F + T +++ + G+ K+ ++ L
Sbjct: 304 VPETAGIKFPDFKSAGVTLRSQRMKLPSSVGQKKIKALEQML 345
>gi|13123776 DNA methyltransferase 1 associated protein 1 [Homo
sapiens]
Length = 467
Score = 28.9 bits (63), Expect = 8.5
Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 206 EEMLVEKLSDLDYMQFIRL-----LEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPV 260
EE L+++L ++ + R L+KL+T+ AE+ +R L KK+ +P
Sbjct: 244 EEYLLQELRKIEARKKEREKRSQDLQKLITAADTTAEQRRTERKAPKKKLPQKKEAEKPA 303
Query: 261 QYDEQGMAFSKSEGKRKTAKAEAIVYKHGSGRIKVNGIDYQL 302
+ G+ F + T +++ + G+ K+ ++ L
Sbjct: 304 VPETAGIKFPDFKSAGVTLRSQRMKLPSSVGQKKIKALEQML 345
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 28.9 bits (63), Expect = 8.5
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 59 KNVPTSKRETYTEDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDI-DRAIAYLFPSGLF 117
K + + E +T IKK+ E+ N R+ + G+DP + +D+ D + LF L
Sbjct: 42 KRLMADELERFTSMRIKKEKEKPNSAHRNSSASYGDDPTAQSLQDVSDEQVLVLFEQMLL 101
Query: 118 EKRARPVMKHP 128
+ + P
Sbjct: 102 DMNLNEEKQQP 112
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,863,226
Number of Sequences: 37866
Number of extensions: 641701
Number of successful extensions: 1553
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1538
Number of HSP's gapped (non-prelim): 29
length of query: 396
length of database: 18,247,518
effective HSP length: 104
effective length of query: 292
effective length of database: 14,309,454
effective search space: 4178360568
effective search space used: 4178360568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.